data_4H1N # _model_server_result.job_id PTDYiMv4pyqIFVmISikQQw _model_server_result.datetime_utc '2024-11-20 11:38:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4H1N # _exptl.entry_id 4H1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4H1N _cell.length_a 91.385 _cell.length_b 91.385 _cell.length_c 152.286 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 417 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 436 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.539 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 246 n n CHA C4D HEM doub 247 n n CHA HHA HEM sing 248 n n CHB C4A HEM sing 249 n n CHB C1B HEM doub 250 n n CHB HHB HEM sing 251 n n CHC C4B HEM sing 252 n n CHC C1C HEM doub 253 n n CHC HHC HEM sing 254 n n CHD C4C HEM doub 255 n n CHD C1D HEM sing 256 n n CHD HHD HEM sing 257 n n C1A C2A HEM doub 258 n y C1A NA HEM sing 259 n y C2A C3A HEM sing 260 n y C2A CAA HEM sing 261 n n C3A C4A HEM doub 262 n y C3A CMA HEM sing 263 n n C4A NA HEM sing 264 n y CMA HMA HEM sing 265 n n CMA HMAA HEM sing 266 n n CMA HMAB HEM sing 267 n n CAA CBA HEM sing 268 n n CAA HAA HEM sing 269 n n CAA HAAA HEM sing 270 n n CBA CGA HEM sing 271 n n CBA HBA HEM sing 272 n n CBA HBAA HEM sing 273 n n CGA O1A HEM doub 274 n n CGA O2A HEM sing 275 n n C1B C2B HEM sing 276 n n C1B NB HEM sing 277 n n C2B C3B HEM doub 278 n n C2B CMB HEM sing 279 n n C3B C4B HEM sing 280 n n C3B CAB HEM sing 281 n n C4B NB HEM doub 282 n n CMB HMB HEM sing 283 n n CMB HMBA HEM sing 284 n n CMB HMBB HEM sing 285 n n CAB CBB HEM doub 286 n n CAB HAB HEM sing 287 n n CBB HBB HEM sing 288 n n CBB HBBA HEM sing 289 n n C1C C2C HEM sing 290 n y C1C NC HEM sing 291 n y C2C C3C HEM doub 292 n y C2C CMC HEM sing 293 n n C3C C4C HEM sing 294 n y C3C CAC HEM sing 295 n n C4C NC HEM sing 296 n y CMC HMC HEM sing 297 n n CMC HMCA HEM sing 298 n n CMC HMCB HEM sing 299 n n CAC CBC HEM doub 300 n n CAC HAC HEM sing 301 n n CBC HBC HEM sing 302 n n CBC HBCA HEM sing 303 n n C1D C2D HEM sing 304 n n C1D ND HEM doub 305 n n C2D C3D HEM doub 306 n n C2D CMD HEM sing 307 n n C3D C4D HEM sing 308 n n C3D CAD HEM sing 309 n n C4D ND HEM sing 310 n n CMD HMD HEM sing 311 n n CMD HMDA HEM sing 312 n n CMD HMDB HEM sing 313 n n CAD CBD HEM sing 314 n n CAD HAD HEM sing 315 n n CAD HADA HEM sing 316 n n CBD CGD HEM sing 317 n n CBD HBD HEM sing 318 n n CBD HBDA HEM sing 319 n n CGD O1D HEM doub 320 n n CGD O2D HEM sing 321 n n O2A H2A HEM sing 322 n n O2D H2D HEM sing 323 n n FE NA HEM sing 324 n n FE NB HEM sing 325 n n FE NC HEM sing 326 n n FE ND HEM sing 327 n n # _atom_sites.entry_id 4H1N _atom_sites.fract_transf_matrix[1][1] 0.010943 _atom_sites.fract_transf_matrix[1][2] 0.006318 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 500 HEM HEM . C 3 CM5 A 1 502 502 CM5 CM5 . D 3 CM5 A 1 503 603 CM5 CM5 . E 3 CM5 A 1 504 504 CM5 CM5 . F 4 CGE A 1 505 501 CGE CGE . G 5 SO4 A 1 506 1 SO4 SO4 . H 6 HOH A 1 601 3 HOH HOH . H 6 HOH A 2 602 4 HOH HOH . H 6 HOH A 3 603 6 HOH HOH . H 6 HOH A 4 604 7 HOH HOH . H 6 HOH A 5 605 8 HOH HOH . H 6 HOH A 6 606 10 HOH HOH . H 6 HOH A 7 607 12 HOH HOH . H 6 HOH A 8 608 14 HOH HOH . H 6 HOH A 9 609 15 HOH HOH . H 6 HOH A 10 610 16 HOH HOH . H 6 HOH A 11 611 17 HOH HOH . H 6 HOH A 12 612 19 HOH HOH . H 6 HOH A 13 613 20 HOH HOH . H 6 HOH A 14 614 22 HOH HOH . H 6 HOH A 15 615 23 HOH HOH . H 6 HOH A 16 616 24 HOH HOH . H 6 HOH A 17 617 25 HOH HOH . H 6 HOH A 18 618 26 HOH HOH . H 6 HOH A 19 619 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -20.778 33.908 -10.938 1 55.97 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . B 2 -23.006 35.341 -6.885 1 55.34 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . B 2 -27.271 34.908 -9.113 1 55.52 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . B 2 -25.017 33.975 -13.306 1 55.25 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . B 2 -21.02 34.312 -9.65 1 55.18 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . B 2 -20.016 34.492 -8.626 1 55.96 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . B 2 -20.627 34.88 -7.509 1 55.29 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . B 2 -22.041 34.97 -7.787 1 55.06 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . B 2 -19.948 35.19 -6.158 1 55.18 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . B 2 -18.499 34.261 -8.783 1 57.52 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . B 2 -17.86 35.321 -9.668 1 58.8 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . B 2 -16.39 35.005 -9.71 1 60.45 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . B 2 -15.92 34.512 -10.764 1 61.5 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . B 2 -15.689 35.225 -8.686 1 60.34 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . B 2 -24.365 35.317 -7.105 1 56.2 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . B 2 -25.405 35.571 -6.119 1 56.18 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . B 2 -26.58 35.45 -6.742 1 56.12 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . B 2 -26.328 35.117 -8.134 1 56.05 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . B 2 -25.185 35.92 -4.624 1 55.35 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . B 2 -27.972 35.631 -6.104 1 56.51 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . B 2 -28.327 36.828 -5.63 1 57.44 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . B 2 -27.026 34.673 -10.446 1 54.82 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . B 2 -28.03 34.633 -11.494 1 54.63 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . B 2 -27.396 34.369 -12.652 1 54.03 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . B 2 -25.982 34.243 -12.365 1 54.61 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . B 2 -29.548 34.862 -11.27 1 53.49 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . B 2 -27.983 34.229 -14.076 1 51.43 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . B 2 -29.246 33.865 -14.29 1 51.41 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . B 2 -23.682 33.776 -13.079 1 56.03 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . B 2 -22.72 33.246 -14.031 1 56.73 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . B 2 -21.387 33.222 -13.272 1 57.02 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . B 2 -21.69 33.745 -11.953 1 56.76 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . B 2 -22.957 32.791 -15.493 1 56.61 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . B 2 -20.02 32.752 -13.817 1 57.74 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . B 2 -19.307 33.991 -14.35 1 59.84 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . B 2 -18.132 33.643 -15.224 1 60.64 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . B 2 -18.05 34.196 -16.351 1 61.62 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . B 2 -17.273 32.828 -14.797 1 60.89 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . B 2 -22.245 34.615 -9.105 1 54.92 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . B 2 -24.968 35.043 -8.319 1 55.86 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . B 2 -25.793 34.428 -11.015 1 54.63 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . B 2 -23.044 34.056 -11.882 1 56.32 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . B 2 -24.053 34.493 -10.08 1 58.01 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 696 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #