data_4H1N # _model_server_result.job_id MZdaK-3D5PIXQX0WlcSwbQ _model_server_result.datetime_utc '2024-11-20 11:31:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 4H1N # _exptl.entry_id 4H1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.573 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4H1N _cell.length_a 91.385 _cell.length_b 91.385 _cell.length_c 152.286 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 417 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 436 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.539 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H42 O11' _chem_comp.formula_weight 494.573 _chem_comp.id CM5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE;CYMAL-5' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 CM5 sing 109 n n C7 C6 CM5 sing 110 n n C7 H71 CM5 sing 111 n n C7 H72 CM5 sing 112 n n C8 C9 CM5 sing 113 n n C8 H81 CM5 sing 114 n n C8 H82 CM5 sing 115 n n C9 C10 CM5 sing 116 n n C9 H91 CM5 sing 117 n n C9 H92 CM5 sing 118 n n C10 C11 CM5 sing 119 n n C10 H101 CM5 sing 120 n n C10 H102 CM5 sing 121 n n C11 C6 CM5 sing 122 n n C11 H111 CM5 sing 123 n n C11 H112 CM5 sing 124 n n C6 C5 CM5 sing 125 n n C6 H6 CM5 sing 126 n n C5 C4 CM5 sing 127 n n C5 H51 CM5 sing 128 n n C5 H52 CM5 sing 129 n n C4 C3 CM5 sing 130 n n C4 H41 CM5 sing 131 n n C4 H42 CM5 sing 132 n n C3 C2 CM5 sing 133 n n C3 H31A CM5 sing 134 n n C3 H32A CM5 sing 135 n n C2 C1 CM5 sing 136 n n C2 H21A CM5 sing 137 n n C2 H22A CM5 sing 138 n n C1 O12 CM5 sing 139 n n C1 H11 CM5 sing 140 n n C1 H12 CM5 sing 141 n n O12 C13 CM5 sing 142 n n C13 C18 CM5 sing 143 n n C13 O14 CM5 sing 144 n n C13 H13 CM5 sing 145 n n C18 O22 CM5 sing 146 n n C18 C17 CM5 sing 147 n n C18 H18 CM5 sing 148 n n O22 H22 CM5 sing 149 n n C17 O21 CM5 sing 150 n n C17 C16 CM5 sing 151 n n C17 H17 CM5 sing 152 n n O21 H21 CM5 sing 153 n n O14 C15 CM5 sing 154 n n C15 C19 CM5 sing 155 n n C15 C16 CM5 sing 156 n n C15 H15 CM5 sing 157 n n C19 O20 CM5 sing 158 n n C19 H191 CM5 sing 159 n n C19 H192 CM5 sing 160 n n O20 H20 CM5 sing 161 n n C16 O23 CM5 sing 162 n n C16 H16 CM5 sing 163 n n O23 C24 CM5 sing 164 n n C24 O25 CM5 sing 165 n n C24 C29 CM5 sing 166 n n C24 H24 CM5 sing 167 n n O25 C26 CM5 sing 168 n n C26 C30 CM5 sing 169 n n C26 C27 CM5 sing 170 n n C26 H26 CM5 sing 171 n n C30 O31 CM5 sing 172 n n C30 H301 CM5 sing 173 n n C30 H302 CM5 sing 174 n n O31 H31 CM5 sing 175 n n C27 O32 CM5 sing 176 n n C27 C28 CM5 sing 177 n n C27 H27 CM5 sing 178 n n O32 H32 CM5 sing 179 n n C28 O33 CM5 sing 180 n n C28 C29 CM5 sing 181 n n C28 H28 CM5 sing 182 n n O33 H33 CM5 sing 183 n n C29 O34 CM5 sing 184 n n C29 H29 CM5 sing 185 n n O34 H34 CM5 sing 186 n n # _atom_sites.entry_id 4H1N _atom_sites.fract_transf_matrix[1][1] 0.010943 _atom_sites.fract_transf_matrix[1][2] 0.006318 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 500 HEM HEM . C 3 CM5 A 1 502 502 CM5 CM5 . D 3 CM5 A 1 503 603 CM5 CM5 . E 3 CM5 A 1 504 504 CM5 CM5 . F 4 CGE A 1 505 501 CGE CGE . G 5 SO4 A 1 506 1 SO4 SO4 . H 6 HOH A 1 601 3 HOH HOH . H 6 HOH A 2 602 4 HOH HOH . H 6 HOH A 3 603 6 HOH HOH . H 6 HOH A 4 604 7 HOH HOH . H 6 HOH A 5 605 8 HOH HOH . H 6 HOH A 6 606 10 HOH HOH . H 6 HOH A 7 607 12 HOH HOH . H 6 HOH A 8 608 14 HOH HOH . H 6 HOH A 9 609 15 HOH HOH . H 6 HOH A 10 610 16 HOH HOH . H 6 HOH A 11 611 17 HOH HOH . H 6 HOH A 12 612 19 HOH HOH . H 6 HOH A 13 613 20 HOH HOH . H 6 HOH A 14 614 22 HOH HOH . H 6 HOH A 15 615 23 HOH HOH . H 6 HOH A 16 616 24 HOH HOH . H 6 HOH A 17 617 25 HOH HOH . H 6 HOH A 18 618 26 HOH HOH . H 6 HOH A 19 619 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 CM5 . . . E 3 -33.786 21.377 -14.552 1 126.07 ? C7 CM5 504 A 1 HETATM 2 C C8 CM5 . . . E 3 -32.89 21.421 -13.289 1 125.56 ? C8 CM5 504 A 1 HETATM 3 C C9 CM5 . . . E 3 -33.223 22.611 -12.385 1 125.34 ? C9 CM5 504 A 1 HETATM 4 C C10 CM5 . . . E 3 -34.675 22.555 -11.877 1 125.6 ? C10 CM5 504 A 1 HETATM 5 C C11 CM5 . . . E 3 -35.669 22.098 -12.973 1 126.09 ? C11 CM5 504 A 1 HETATM 6 C C6 CM5 . . . E 3 -35.065 22.24 -14.394 1 126.49 ? C6 CM5 504 A 1 HETATM 7 C C5 CM5 . . . E 3 -36.102 21.949 -15.52 1 127.19 ? C5 CM5 504 A 1 HETATM 8 C C4 CM5 . . . E 3 -36.823 20.584 -15.397 1 128.36 ? C4 CM5 504 A 1 HETATM 9 C C3 CM5 . . . E 3 -38.255 20.696 -15.962 1 129.2 ? C3 CM5 504 A 1 HETATM 10 C C2 CM5 . . . E 3 -38.817 19.34 -16.442 1 129.99 ? C2 CM5 504 A 1 HETATM 11 C C1 CM5 . . . E 3 -39.287 18.961 -17.76 1 130.79 ? C1 CM5 504 A 1 HETATM 12 O O12 CM5 . . . E 3 -39.047 18.143 -18.86 1 131.51 ? O12 CM5 504 A 1 HETATM 13 C C13 CM5 . . . E 3 -40.229 17.717 -19.278 1 132.08 ? C13 CM5 504 A 1 HETATM 14 C C18 CM5 . . . E 3 -40.424 18.452 -20.652 1 132.31 ? C18 CM5 504 A 1 HETATM 15 O O22 CM5 . . . E 3 -40.122 19.861 -20.544 1 132.01 ? O22 CM5 504 A 1 HETATM 16 C C17 CM5 . . . E 3 -41.985 18.76 -20.747 1 132.66 ? C17 CM5 504 A 1 HETATM 17 O O21 CM5 . . . E 3 -42.271 19.458 -21.889 1 132.33 ? O21 CM5 504 A 1 HETATM 18 O O14 CM5 . . . E 3 -40.963 16.453 -19.28 1 132.45 ? O14 CM5 504 A 1 HETATM 19 C C15 CM5 . . . E 3 -42.418 16.545 -19.388 1 132.97 ? C15 CM5 504 A 1 HETATM 20 C C19 CM5 . . . E 3 -42.911 15.214 -19.969 1 132.98 ? C19 CM5 504 A 1 HETATM 21 O O20 CM5 . . . E 3 -43.571 14.466 -18.942 1 133.18 ? O20 CM5 504 A 1 HETATM 22 C C16 CM5 . . . E 3 -42.79 17.531 -20.506 1 133.16 ? C16 CM5 504 A 1 HETATM 23 O O23 CM5 . . . E 3 -44.272 17.748 -20.758 1 134.04 ? O23 CM5 504 A 1 HETATM 24 C C24 CM5 . . . E 3 -44.687 16.722 -21.728 1 134.63 ? C24 CM5 504 A 1 HETATM 25 O O25 CM5 . . . E 3 -45.567 15.792 -21.014 1 134.97 ? O25 CM5 504 A 1 HETATM 26 C C26 CM5 . . . E 3 -46.437 14.952 -21.827 1 134.99 ? C26 CM5 504 A 1 HETATM 27 C C30 CM5 . . . E 3 -46.036 13.748 -22.238 1 134.94 ? C30 CM5 504 A 1 HETATM 28 O O31 CM5 . . . E 3 -46.301 12.79 -21.348 1 134.91 ? O31 CM5 504 A 1 HETATM 29 C C27 CM5 . . . E 3 -47.414 15.789 -22.674 1 135.01 ? C27 CM5 504 A 1 HETATM 30 O O32 CM5 . . . E 3 -48.776 15.344 -22.924 1 134.84 ? O32 CM5 504 A 1 HETATM 31 C C28 CM5 . . . E 3 -46.938 17.253 -22.821 1 134.97 ? C28 CM5 504 A 1 HETATM 32 O O33 CM5 . . . E 3 -47.555 17.858 -23.973 1 135.15 ? O33 CM5 504 A 1 HETATM 33 C C29 CM5 . . . E 3 -45.399 17.368 -22.938 1 134.79 ? C29 CM5 504 A 1 HETATM 34 O O34 CM5 . . . E 3 -45.069 18.685 -23.579 1 134.43 ? O34 CM5 504 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #