data_4H1V # _model_server_result.job_id VFOLg9BIS-2ZqsQwd9Htlw _model_server_result.datetime_utc '2025-02-05 17:00:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4H1V # _exptl.entry_id 4H1V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H1V _cell.length_a 53.42 _cell.length_b 151.31 _cell.length_c 43.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 4H1V _atom_sites.fract_transf_matrix[1][1] 0.01872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023223 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 801 1 GNP GNP . C 3 HOH A 1 900 1 HOH MG . C 3 HOH A 2 901 1 HOH HOH . C 3 HOH A 3 902 2 HOH HOH . C 3 HOH A 4 903 3 HOH HOH . C 3 HOH A 5 904 4 HOH HOH . C 3 HOH A 6 905 5 HOH HOH . C 3 HOH A 7 906 6 HOH HOH . C 3 HOH A 8 907 7 HOH HOH . C 3 HOH A 9 908 8 HOH HOH . C 3 HOH A 10 909 9 HOH HOH . C 3 HOH A 11 910 10 HOH HOH . C 3 HOH A 12 911 11 HOH HOH . C 3 HOH A 13 912 12 HOH HOH . C 3 HOH A 14 913 13 HOH HOH . C 3 HOH A 15 914 14 HOH HOH . C 3 HOH A 16 915 15 HOH HOH . C 3 HOH A 17 916 16 HOH HOH . C 3 HOH A 18 917 17 HOH HOH . C 3 HOH A 19 918 18 HOH HOH . C 3 HOH A 20 919 19 HOH HOH . C 3 HOH A 21 920 20 HOH HOH . C 3 HOH A 22 921 21 HOH HOH . C 3 HOH A 23 922 22 HOH HOH . C 3 HOH A 24 923 23 HOH HOH . C 3 HOH A 25 924 24 HOH HOH . C 3 HOH A 26 925 25 HOH HOH . C 3 HOH A 27 926 26 HOH HOH . C 3 HOH A 28 927 27 HOH HOH . C 3 HOH A 29 928 28 HOH HOH . C 3 HOH A 30 929 29 HOH HOH . C 3 HOH A 31 930 30 HOH HOH . C 3 HOH A 32 931 31 HOH HOH . C 3 HOH A 33 932 32 HOH HOH . C 3 HOH A 34 933 33 HOH HOH . C 3 HOH A 35 934 34 HOH HOH . C 3 HOH A 36 935 35 HOH HOH . C 3 HOH A 37 936 36 HOH HOH . C 3 HOH A 38 937 37 HOH HOH . C 3 HOH A 39 938 38 HOH HOH . C 3 HOH A 40 939 39 HOH HOH . C 3 HOH A 41 940 40 HOH HOH . C 3 HOH A 42 941 41 HOH HOH . C 3 HOH A 43 942 42 HOH HOH . C 3 HOH A 44 943 43 HOH HOH . C 3 HOH A 45 944 44 HOH HOH . C 3 HOH A 46 945 45 HOH HOH . C 3 HOH A 47 946 46 HOH HOH . C 3 HOH A 48 947 47 HOH HOH . C 3 HOH A 49 948 48 HOH HOH . C 3 HOH A 50 949 49 HOH HOH . C 3 HOH A 51 950 50 HOH HOH . C 3 HOH A 52 951 51 HOH HOH . C 3 HOH A 53 952 52 HOH HOH . C 3 HOH A 54 953 53 HOH HOH . C 3 HOH A 55 954 54 HOH HOH . C 3 HOH A 56 955 55 HOH HOH . C 3 HOH A 57 956 56 HOH HOH . C 3 HOH A 58 957 57 HOH HOH . C 3 HOH A 59 958 58 HOH HOH . C 3 HOH A 60 959 59 HOH HOH . C 3 HOH A 61 960 60 HOH HOH . C 3 HOH A 62 961 61 HOH HOH . C 3 HOH A 63 962 62 HOH HOH . C 3 HOH A 64 963 63 HOH HOH . C 3 HOH A 65 964 64 HOH HOH . C 3 HOH A 66 965 65 HOH HOH . C 3 HOH A 67 966 66 HOH HOH . C 3 HOH A 68 967 67 HOH HOH . C 3 HOH A 69 968 68 HOH HOH . C 3 HOH A 70 969 69 HOH HOH . C 3 HOH A 71 970 70 HOH HOH . C 3 HOH A 72 971 71 HOH HOH . C 3 HOH A 73 972 72 HOH HOH . C 3 HOH A 74 973 73 HOH HOH . C 3 HOH A 75 974 74 HOH HOH . C 3 HOH A 76 975 75 HOH HOH . C 3 HOH A 77 976 76 HOH HOH . C 3 HOH A 78 977 77 HOH HOH . C 3 HOH A 79 978 78 HOH HOH . C 3 HOH A 80 979 79 HOH HOH . C 3 HOH A 81 980 80 HOH HOH . C 3 HOH A 82 981 81 HOH HOH . C 3 HOH A 83 982 82 HOH HOH . C 3 HOH A 84 983 83 HOH HOH . C 3 HOH A 85 984 84 HOH HOH . C 3 HOH A 86 985 85 HOH HOH . C 3 HOH A 87 986 86 HOH HOH . C 3 HOH A 88 987 87 HOH HOH . C 3 HOH A 89 988 88 HOH HOH . C 3 HOH A 90 989 89 HOH HOH . C 3 HOH A 91 990 90 HOH HOH . C 3 HOH A 92 991 91 HOH HOH . C 3 HOH A 93 992 92 HOH HOH . C 3 HOH A 94 993 93 HOH HOH . C 3 HOH A 95 994 94 HOH HOH . C 3 HOH A 96 995 95 HOH HOH . C 3 HOH A 97 996 96 HOH HOH . C 3 HOH A 98 997 97 HOH HOH . C 3 HOH A 99 998 98 HOH HOH . C 3 HOH A 100 999 99 HOH HOH . C 3 HOH A 101 1000 100 HOH HOH . C 3 HOH A 102 1001 101 HOH HOH . C 3 HOH A 103 1002 102 HOH HOH . C 3 HOH A 104 1003 103 HOH HOH . C 3 HOH A 105 1004 104 HOH HOH . C 3 HOH A 106 1005 105 HOH HOH . C 3 HOH A 107 1006 106 HOH HOH . C 3 HOH A 108 1007 107 HOH HOH . C 3 HOH A 109 1008 108 HOH HOH . C 3 HOH A 110 1009 109 HOH HOH . C 3 HOH A 111 1010 110 HOH HOH . C 3 HOH A 112 1011 111 HOH HOH . C 3 HOH A 113 1012 112 HOH HOH . C 3 HOH A 114 1013 113 HOH HOH . C 3 HOH A 115 1014 114 HOH HOH . C 3 HOH A 116 1015 115 HOH HOH . C 3 HOH A 117 1016 116 HOH HOH . C 3 HOH A 118 1017 117 HOH HOH . C 3 HOH A 119 1018 118 HOH HOH . C 3 HOH A 120 1019 119 HOH HOH . C 3 HOH A 121 1020 120 HOH HOH . C 3 HOH A 122 1021 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 -9.792 26.517 -24.66 1 86.27 ? PG GNP 801 A 1 HETATM 2 O O1G GNP . . . B 2 -10.83 27.302 -25.424 1 79.24 ? O1G GNP 801 A 1 HETATM 3 O O2G GNP . . . B 2 -8.881 27.335 -23.776 1 69.63 ? O2G GNP 801 A 1 HETATM 4 O O3G GNP . . . B 2 -9.098 25.705 -25.728 1 75.16 ? O3G GNP 801 A 1 HETATM 5 N N3B GNP . . . B 2 -10.559 25.452 -23.766 1 67.28 ? N3B GNP 801 A 1 HETATM 6 P PB GNP . . . B 2 -10.494 25.309 -22.186 1 56.68 ? PB GNP 801 A 1 HETATM 7 O O1B GNP . . . B 2 -9.553 26.244 -21.53 1 55.94 ? O1B GNP 801 A 1 HETATM 8 O O2B GNP . . . B 2 -11.902 25.338 -21.73 1 53.4 ? O2B GNP 801 A 1 HETATM 9 O O3A GNP . . . B 2 -9.98 23.907 -21.91 1 50.15 ? O3A GNP 801 A 1 HETATM 10 P PA GNP . . . B 2 -8.692 23.416 -22.551 1 47.23 ? PA GNP 801 A 1 HETATM 11 O O1A GNP . . . B 2 -8.376 22.107 -21.938 1 51.28 ? O1A GNP 801 A 1 HETATM 12 O O2A GNP . . . B 2 -8.801 23.47 -24.025 1 55.26 ? O2A GNP 801 A 1 HETATM 13 O O5' GNP . . . B 2 -7.543 24.417 -22.135 1 52.47 ? O5' GNP 801 A 1 HETATM 14 C C5' GNP . . . B 2 -6.557 24 -21.202 1 47.72 ? C5' GNP 801 A 1 HETATM 15 C C4' GNP . . . B 2 -5.226 23.719 -21.874 1 46.25 ? C4' GNP 801 A 1 HETATM 16 O O4' GNP . . . B 2 -4.307 23.208 -20.88 1 48.73 ? O4' GNP 801 A 1 HETATM 17 C C3' GNP . . . B 2 -5.251 22.671 -22.979 1 47.47 ? C3' GNP 801 A 1 HETATM 18 O O3' GNP . . . B 2 -4.281 22.985 -23.972 1 48.4 ? O3' GNP 801 A 1 HETATM 19 C C2' GNP . . . B 2 -4.912 21.363 -22.264 1 44.34 ? C2' GNP 801 A 1 HETATM 20 O O2' GNP . . . B 2 -4.053 20.547 -23.037 1 49.45 ? O2' GNP 801 A 1 HETATM 21 C C1' GNP . . . B 2 -4.189 21.802 -20.992 1 43.16 ? C1' GNP 801 A 1 HETATM 22 N N9 GNP . . . B 2 -4.729 21.186 -19.782 1 42.2 ? N9 GNP 801 A 1 HETATM 23 C C8 GNP . . . B 2 -6.048 21.114 -19.403 1 42.17 ? C8 GNP 801 A 1 HETATM 24 N N7 GNP . . . B 2 -6.232 20.501 -18.267 1 37.36 ? N7 GNP 801 A 1 HETATM 25 C C5 GNP . . . B 2 -4.952 20.143 -17.863 1 38.68 ? C5 GNP 801 A 1 HETATM 26 C C6 GNP . . . B 2 -4.522 19.455 -16.703 1 36.17 ? C6 GNP 801 A 1 HETATM 27 O O6 GNP . . . B 2 -5.213 19.012 -15.774 1 31.94 ? O6 GNP 801 A 1 HETATM 28 N N1 GNP . . . B 2 -3.138 19.298 -16.682 1 34.3 ? N1 GNP 801 A 1 HETATM 29 C C2 GNP . . . B 2 -2.28 19.75 -17.658 1 38.36 ? C2 GNP 801 A 1 HETATM 30 N N2 GNP . . . B 2 -0.975 19.507 -17.465 1 40.96 ? N2 GNP 801 A 1 HETATM 31 N N3 GNP . . . B 2 -2.671 20.396 -18.749 1 35.81 ? N3 GNP 801 A 1 HETATM 32 C C4 GNP . . . B 2 -4.016 20.557 -18.785 1 38.41 ? C4 GNP 801 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #