data_4H2J # _model_server_result.job_id NoNbdl4PYd0HP8VpPb7wmw _model_server_result.datetime_utc '2024-11-02 19:42:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h2j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4H2J # _exptl.entry_id 4H2J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 495.489 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~4~-[4-(4,5-dihydro-1H-imidazol-2-yl)phenyl]-N~1~-[4-(1H-imidazol-2-yl)phenyl]-2-nitrobenzene-1,4-dicarboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H2J _cell.length_a 63.16 _cell.length_b 68.961 _cell.length_c 111.735 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H2J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C26 H21 N7 O4' _chem_comp.formula_weight 495.489 _chem_comp.id 0YU _chem_comp.mon_nstd_flag . _chem_comp.name N~4~-[4-(4,5-dihydro-1H-imidazol-2-yl)phenyl]-N~1~-[4-(1H-imidazol-2-yl)phenyl]-2-nitrobenzene-1,4-dicarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAP CAR 0YU sing 1 n n CAP NAT 0YU sing 2 n n CAI CAE 0YU doub 3 n y CAI CBF 0YU sing 4 n y CAE CBD 0YU sing 5 n y CAR NAX 0YU sing 6 n n NAX CBB 0YU doub 7 n n NAT CBB 0YU sing 8 n n CBB CBF 0YU sing 9 n n CBF CAJ 0YU doub 10 n y CBD NAV 0YU sing 11 n n CBD CAF 0YU doub 12 n y NAV CAZ 0YU sing 13 n n OAC NBK 0YU sing 14 n n CAJ CAF 0YU sing 15 n y CAH CAL 0YU doub 16 n y CAH CBE 0YU sing 17 n y NBK CBJ 0YU sing 18 n n NBK OAD 0YU doub 19 n n CAO CBJ 0YU doub 20 n y CAO CBH 0YU sing 21 n y CAZ CBH 0YU sing 22 n n CAZ OAA 0YU doub 23 n n CBJ CBI 0YU sing 24 n y NAW CBA 0YU sing 25 n n NAW CBE 0YU sing 26 n n CBH CAM 0YU doub 27 n y CAL CBG 0YU sing 28 n y CBI CAN 0YU doub 29 n y CBI CBA 0YU sing 30 n n CAM CAN 0YU sing 31 n y CBA OAB 0YU doub 32 n n CBE CAG 0YU doub 33 n y CBG CBC 0YU sing 34 n n CBG CAK 0YU doub 35 n y CAG CAK 0YU sing 36 n y CBC NAU 0YU sing 37 n y CBC NAY 0YU doub 38 n y NAU CAQ 0YU sing 39 n y NAY CAS 0YU sing 40 n y CAQ CAS 0YU doub 41 n y NAU H1 0YU sing 42 n n CAQ H2 0YU sing 43 n n CAS H3 0YU sing 44 n n CAL H5 0YU sing 45 n n CAH H6 0YU sing 46 n n CAK H7 0YU sing 47 n n CAG H8 0YU sing 48 n n NAW H9 0YU sing 49 n n CAO H10 0YU sing 50 n n CAN H11 0YU sing 51 n n CAM H12 0YU sing 52 n n NAV H13 0YU sing 53 n n CAF H14 0YU sing 54 n n CAJ H15 0YU sing 55 n n CAE H16 0YU sing 56 n n CAI H17 0YU sing 57 n n CAR H21 0YU sing 58 n n CAR H22 0YU sing 59 n n CAP H23 0YU sing 60 n n CAP H24 0YU sing 61 n n NAT H25 0YU sing 62 n n # _atom_sites.entry_id 4H2J _atom_sites.fract_transf_matrix[1][1] 0.015833 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0YU A 1 301 1 0YU DRG . D 2 0YU B 1 301 1 0YU DRG . E 3 HOH A 1 401 1 HOH HOH . E 3 HOH A 2 402 2 HOH HOH . E 3 HOH A 3 403 4 HOH HOH . E 3 HOH A 4 404 10 HOH HOH . E 3 HOH A 5 405 12 HOH HOH . E 3 HOH A 6 406 13 HOH HOH . E 3 HOH A 7 407 14 HOH HOH . E 3 HOH A 8 408 16 HOH HOH . E 3 HOH A 9 409 17 HOH HOH . E 3 HOH A 10 410 18 HOH HOH . E 3 HOH A 11 411 19 HOH HOH . E 3 HOH A 12 412 21 HOH HOH . E 3 HOH A 13 413 22 HOH HOH . E 3 HOH A 14 414 24 HOH HOH . E 3 HOH A 15 415 25 HOH HOH . E 3 HOH A 16 416 28 HOH HOH . E 3 HOH A 17 417 29 HOH HOH . E 3 HOH A 18 418 31 HOH HOH . E 3 HOH A 19 419 32 HOH HOH . E 3 HOH A 20 420 36 HOH HOH . E 3 HOH A 21 421 37 HOH HOH . E 3 HOH A 22 422 42 HOH HOH . E 3 HOH A 23 423 45 HOH HOH . E 3 HOH A 24 424 46 HOH HOH . E 3 HOH A 25 425 48 HOH HOH . E 3 HOH A 26 426 50 HOH HOH . E 3 HOH A 27 427 51 HOH HOH . E 3 HOH A 28 428 52 HOH HOH . E 3 HOH A 29 429 54 HOH HOH . E 3 HOH A 30 430 55 HOH HOH . E 3 HOH A 31 431 56 HOH HOH . E 3 HOH A 32 432 57 HOH HOH . E 3 HOH A 33 433 59 HOH HOH . E 3 HOH A 34 434 62 HOH HOH . E 3 HOH A 35 435 64 HOH HOH . E 3 HOH A 36 436 67 HOH HOH . E 3 HOH A 37 437 69 HOH HOH . E 3 HOH A 38 438 72 HOH HOH . E 3 HOH A 39 439 74 HOH HOH . E 3 HOH A 40 440 75 HOH HOH . E 3 HOH A 41 441 76 HOH HOH . E 3 HOH A 42 442 78 HOH HOH . E 3 HOH A 43 443 80 HOH HOH . E 3 HOH A 44 444 84 HOH HOH . E 3 HOH A 45 445 85 HOH HOH . E 3 HOH A 46 446 86 HOH HOH . E 3 HOH A 47 447 87 HOH HOH . E 3 HOH A 48 448 88 HOH HOH . E 3 HOH A 49 449 89 HOH HOH . E 3 HOH A 50 450 91 HOH HOH . E 3 HOH A 51 451 94 HOH HOH . E 3 HOH A 52 452 95 HOH HOH . E 3 HOH A 53 453 98 HOH HOH . E 3 HOH A 54 454 102 HOH HOH . E 3 HOH A 55 455 103 HOH HOH . E 3 HOH A 56 456 104 HOH HOH . E 3 HOH A 57 457 109 HOH HOH . E 3 HOH A 58 458 114 HOH HOH . E 3 HOH A 59 459 117 HOH HOH . E 3 HOH A 60 460 118 HOH HOH . E 3 HOH A 61 461 120 HOH HOH . E 3 HOH A 62 462 126 HOH HOH . E 3 HOH A 63 463 127 HOH HOH . F 3 HOH B 1 401 3 HOH HOH . F 3 HOH B 2 402 5 HOH HOH . F 3 HOH B 3 403 6 HOH HOH . F 3 HOH B 4 404 7 HOH HOH . F 3 HOH B 5 405 8 HOH HOH . F 3 HOH B 6 406 9 HOH HOH . F 3 HOH B 7 407 11 HOH HOH . F 3 HOH B 8 408 15 HOH HOH . F 3 HOH B 9 409 20 HOH HOH . F 3 HOH B 10 410 23 HOH HOH . F 3 HOH B 11 411 26 HOH HOH . F 3 HOH B 12 412 27 HOH HOH . F 3 HOH B 13 413 30 HOH HOH . F 3 HOH B 14 414 33 HOH HOH . F 3 HOH B 15 415 34 HOH HOH . F 3 HOH B 16 416 35 HOH HOH . F 3 HOH B 17 417 38 HOH HOH . F 3 HOH B 18 418 39 HOH HOH . F 3 HOH B 19 419 41 HOH HOH . F 3 HOH B 20 420 43 HOH HOH . F 3 HOH B 21 421 44 HOH HOH . F 3 HOH B 22 422 47 HOH HOH . F 3 HOH B 23 423 49 HOH HOH . F 3 HOH B 24 424 53 HOH HOH . F 3 HOH B 25 425 58 HOH HOH . F 3 HOH B 26 426 60 HOH HOH . F 3 HOH B 27 427 61 HOH HOH . F 3 HOH B 28 428 63 HOH HOH . F 3 HOH B 29 429 65 HOH HOH . F 3 HOH B 30 430 68 HOH HOH . F 3 HOH B 31 431 70 HOH HOH . F 3 HOH B 32 432 71 HOH HOH . F 3 HOH B 33 433 73 HOH HOH . F 3 HOH B 34 434 79 HOH HOH . F 3 HOH B 35 435 81 HOH HOH . F 3 HOH B 36 436 82 HOH HOH . F 3 HOH B 37 437 83 HOH HOH . F 3 HOH B 38 438 92 HOH HOH . F 3 HOH B 39 439 93 HOH HOH . F 3 HOH B 40 440 96 HOH HOH . F 3 HOH B 41 441 97 HOH HOH . F 3 HOH B 42 442 99 HOH HOH . F 3 HOH B 43 443 100 HOH HOH . F 3 HOH B 44 444 101 HOH HOH . F 3 HOH B 45 445 105 HOH HOH . F 3 HOH B 46 446 106 HOH HOH . F 3 HOH B 47 447 107 HOH HOH . F 3 HOH B 48 448 108 HOH HOH . F 3 HOH B 49 449 110 HOH HOH . F 3 HOH B 50 450 111 HOH HOH . F 3 HOH B 51 451 112 HOH HOH . F 3 HOH B 52 452 113 HOH HOH . F 3 HOH B 53 453 115 HOH HOH . F 3 HOH B 54 454 116 HOH HOH . F 3 HOH B 55 455 121 HOH HOH . F 3 HOH B 56 456 122 HOH HOH . F 3 HOH B 57 457 123 HOH HOH . F 3 HOH B 58 458 124 HOH HOH . F 3 HOH B 59 459 125 HOH HOH . F 3 HOH B 60 460 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAU 0YU . . . D 2 6.325 51.623 28.486 1 73.2 ? NAU 0YU 301 B 1 HETATM 2 C CAQ 0YU . . . D 2 6.328 52.937 29.099 1 73.72 ? CAQ 0YU 301 B 1 HETATM 3 C CAS 0YU . . . D 2 4.915 53.065 29.617 1 84.78 ? CAS 0YU 301 B 1 HETATM 4 N NAY 0YU . . . D 2 4.184 51.912 29.055 1 83.83 ? NAY 0YU 301 B 1 HETATM 5 C CBC 0YU . . . D 2 5.074 51.125 28.461 1 80.63 ? CBC 0YU 301 B 1 HETATM 6 C CBG 0YU . . . D 2 4.844 49.951 27.9 1 75.24 ? CBG 0YU 301 B 1 HETATM 7 C CAL 0YU . . . D 2 4.198 49.704 26.7 1 73.16 ? CAL 0YU 301 B 1 HETATM 8 C CAH 0YU . . . D 2 4.111 48.386 26.217 1 68.96 ? CAH 0YU 301 B 1 HETATM 9 C CAK 0YU . . . D 2 5.382 48.894 28.588 1 69.85 ? CAK 0YU 301 B 1 HETATM 10 C CAG 0YU . . . D 2 5.315 47.63 28.097 1 64.61 ? CAG 0YU 301 B 1 HETATM 11 C CBE 0YU . . . D 2 4.715 47.337 26.902 1 65.41 ? CBE 0YU 301 B 1 HETATM 12 N NAW 0YU . . . D 2 4.692 46.075 26.552 1 50.74 ? NAW 0YU 301 B 1 HETATM 13 C CBA 0YU . . . D 2 5.769 45.373 26.877 1 52.71 ? CBA 0YU 301 B 1 HETATM 14 O OAB 0YU . . . D 2 6.642 45.85 27.529 1 47.84 ? OAB 0YU 301 B 1 HETATM 15 C CBI 0YU . . . D 2 5.767 43.997 26.727 1 42.27 ? CBI 0YU 301 B 1 HETATM 16 C CBJ 0YU . . . D 2 6.909 43.278 26.534 1 52.96 ? CBJ 0YU 301 B 1 HETATM 17 C CAO 0YU . . . D 2 6.938 41.882 26.421 1 51.91 ? CAO 0YU 301 B 1 HETATM 18 N NBK 0YU . . . D 2 7.966 43.968 26.391 1 57.02 ? NBK 0YU 301 B 1 HETATM 19 O OAD 0YU . . . D 2 8.941 43.509 26.649 1 57.85 ? OAD 0YU 301 B 1 HETATM 20 O OAC 0YU . . . D 2 7.897 44.653 26.027 1 66.78 ? OAC 0YU 301 B 1 HETATM 21 C CAN 0YU . . . D 2 4.622 43.277 26.869 1 49.87 ? CAN 0YU 301 B 1 HETATM 22 C CAM 0YU . . . D 2 4.621 41.885 26.784 1 41.19 ? CAM 0YU 301 B 1 HETATM 23 C CBH 0YU . . . D 2 5.757 41.173 26.568 1 49.3 ? CBH 0YU 301 B 1 HETATM 24 C CAZ 0YU . . . D 2 5.675 39.784 26.485 1 52.4 ? CAZ 0YU 301 B 1 HETATM 25 O OAA 0YU . . . D 2 6.455 39.087 27.098 1 55.13 ? OAA 0YU 301 B 1 HETATM 26 N NAV 0YU . . . D 2 4.664 39.319 25.739 1 49.61 ? NAV 0YU 301 B 1 HETATM 27 C CBD 0YU . . . D 2 4.396 38.035 25.712 1 59.58 ? CBD 0YU 301 B 1 HETATM 28 C CAF 0YU . . . D 2 5.334 37.091 26.084 1 65.62 ? CAF 0YU 301 B 1 HETATM 29 C CAJ 0YU . . . D 2 5.034 35.739 26.052 1 64.66 ? CAJ 0YU 301 B 1 HETATM 30 C CAE 0YU . . . D 2 3.129 37.613 25.359 1 61.27 ? CAE 0YU 301 B 1 HETATM 31 C CAI 0YU . . . D 2 2.818 36.252 25.339 1 61.91 ? CAI 0YU 301 B 1 HETATM 32 C CBF 0YU . . . D 2 3.768 35.322 25.685 1 67.67 ? CBF 0YU 301 B 1 HETATM 33 C CBB 0YU . . . D 2 3.512 34.024 25.683 1 80.51 ? CBB 0YU 301 B 1 HETATM 34 N NAX 0YU . . . D 2 2.268 33.535 25.661 1 82.79 ? NAX 0YU 301 B 1 HETATM 35 C CAR 0YU . . . D 2 2.32 32.09 25.639 1 77.58 ? CAR 0YU 301 B 1 HETATM 36 C CAP 0YU . . . D 2 3.688 31.919 25.067 1 80.27 ? CAP 0YU 301 B 1 HETATM 37 N NAT 0YU . . . D 2 4.414 33.043 25.667 1 83.09 ? NAT 0YU 301 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #