data_4H2M # _model_server_result.job_id TENKfyYhf-EC8m_M1YJpsg _model_server_result.datetime_utc '2024-11-02 19:42:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h2m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4H2M # _exptl.entry_id 4H2M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.274 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2,2'-{benzene-1,3-diylbis[ethyne-2,1-diyl(5-bromobenzene-3,1-diyl)]}diethanamine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H2M _cell.length_a 62.83 _cell.length_b 68.885 _cell.length_c 112.017 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H2M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C26 H22 Br2 N2' _chem_comp.formula_weight 522.274 _chem_comp.id 0YV _chem_comp.mon_nstd_flag . _chem_comp.name "2,2'-{benzene-1,3-diylbis[ethyne-2,1-diyl(5-bromobenzene-3,1-diyl)]}diethanamine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAI CAK 0YV doub 1 n y CAI CAJ 0YV sing 2 n y CAK CAZ 0YV sing 3 n y CAJ CAY 0YV doub 4 n y CAZ CAF 0YV sing 5 n n CAZ CAP 0YV doub 6 n y CAY CAP 0YV sing 7 n y CAY CAE 0YV sing 8 n n CAF CAH 0YV trip 9 n n CAE CAG 0YV trip 10 n n CAH CBB 0YV sing 11 n n BRC CAW 0YV sing 12 n n BRD CAX 0YV sing 13 n n CAM CBB 0YV doub 14 n y CAM CAX 0YV sing 15 n y CAG CBA 0YV sing 16 n n CAL CAW 0YV doub 17 n y CAL CBA 0YV sing 18 n y CBB CAR 0YV sing 19 n y CAX CAO 0YV doub 20 n y CAW CAN 0YV sing 21 n y CBA CAQ 0YV doub 22 n y CAR CBD 0YV doub 23 n y CAO CBD 0YV sing 24 n y CAN CBC 0YV doub 25 n y CAQ CBC 0YV sing 26 n y CBD CAV 0YV sing 27 n n CBC CAU 0YV sing 28 n n CAV CAT 0YV sing 29 n n CAU CAS 0YV sing 30 n n CAT NAB 0YV sing 31 n n CAS NAA 0YV sing 32 n n NAA H1 0YV sing 33 n n NAA H2 0YV sing 34 n n CAS H4 0YV sing 35 n n CAS H5 0YV sing 36 n n CAU H6 0YV sing 37 n n CAU H7 0YV sing 38 n n CAQ H8 0YV sing 39 n n CAN H9 0YV sing 40 n n CAL H10 0YV sing 41 n n CAP H11 0YV sing 42 n n CAJ H12 0YV sing 43 n n CAI H13 0YV sing 44 n n CAK H14 0YV sing 45 n n CAR H15 0YV sing 46 n n CAM H16 0YV sing 47 n n CAO H17 0YV sing 48 n n CAV H18 0YV sing 49 n n CAV H19 0YV sing 50 n n CAT H20 0YV sing 51 n n CAT H21 0YV sing 52 n n NAB H22 0YV sing 53 n n NAB H23 0YV sing 54 n n # _atom_sites.entry_id 4H2M _atom_sites.fract_transf_matrix[1][1] 0.015916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0YV A 1 301 1 0YV DRG . D 2 0YV B 1 301 1 0YV DRG . E 3 HOH A 1 401 3 HOH HOH . E 3 HOH A 2 402 5 HOH HOH . E 3 HOH A 3 403 6 HOH HOH . E 3 HOH A 4 404 8 HOH HOH . E 3 HOH A 5 405 9 HOH HOH . E 3 HOH A 6 406 11 HOH HOH . E 3 HOH A 7 407 13 HOH HOH . E 3 HOH A 8 408 15 HOH HOH . E 3 HOH A 9 409 17 HOH HOH . E 3 HOH A 10 410 18 HOH HOH . E 3 HOH A 11 411 19 HOH HOH . E 3 HOH A 12 412 20 HOH HOH . E 3 HOH A 13 413 21 HOH HOH . E 3 HOH A 14 414 22 HOH HOH . E 3 HOH A 15 415 26 HOH HOH . E 3 HOH A 16 416 27 HOH HOH . E 3 HOH A 17 417 29 HOH HOH . E 3 HOH A 18 418 30 HOH HOH . E 3 HOH A 19 419 33 HOH HOH . E 3 HOH A 20 420 34 HOH HOH . E 3 HOH A 21 421 35 HOH HOH . E 3 HOH A 22 422 38 HOH HOH . E 3 HOH A 23 423 41 HOH HOH . E 3 HOH A 24 424 43 HOH HOH . E 3 HOH A 25 425 45 HOH HOH . E 3 HOH A 26 426 49 HOH HOH . E 3 HOH A 27 427 50 HOH HOH . E 3 HOH A 28 428 52 HOH HOH . E 3 HOH A 29 429 53 HOH HOH . E 3 HOH A 30 430 54 HOH HOH . E 3 HOH A 31 431 59 HOH HOH . E 3 HOH A 32 432 63 HOH HOH . E 3 HOH A 33 433 64 HOH HOH . E 3 HOH A 34 434 66 HOH HOH . E 3 HOH A 35 435 67 HOH HOH . E 3 HOH A 36 436 68 HOH HOH . E 3 HOH A 37 437 69 HOH HOH . E 3 HOH A 38 438 70 HOH HOH . E 3 HOH A 39 439 72 HOH HOH . E 3 HOH A 40 440 77 HOH HOH . E 3 HOH A 41 441 82 HOH HOH . E 3 HOH A 42 442 84 HOH HOH . E 3 HOH A 43 443 86 HOH HOH . E 3 HOH A 44 444 89 HOH HOH . E 3 HOH A 45 445 91 HOH HOH . E 3 HOH A 46 446 93 HOH HOH . E 3 HOH A 47 447 95 HOH HOH . E 3 HOH A 48 448 96 HOH HOH . E 3 HOH A 49 449 97 HOH HOH . E 3 HOH A 50 450 100 HOH HOH . E 3 HOH A 51 451 104 HOH HOH . E 3 HOH A 52 452 108 HOH HOH . F 3 HOH B 1 401 1 HOH HOH . F 3 HOH B 2 402 2 HOH HOH . F 3 HOH B 3 403 4 HOH HOH . F 3 HOH B 4 404 7 HOH HOH . F 3 HOH B 5 405 10 HOH HOH . F 3 HOH B 6 406 12 HOH HOH . F 3 HOH B 7 407 14 HOH HOH . F 3 HOH B 8 408 16 HOH HOH . F 3 HOH B 9 409 23 HOH HOH . F 3 HOH B 10 410 24 HOH HOH . F 3 HOH B 11 411 25 HOH HOH . F 3 HOH B 12 412 28 HOH HOH . F 3 HOH B 13 413 31 HOH HOH . F 3 HOH B 14 414 32 HOH HOH . F 3 HOH B 15 415 36 HOH HOH . F 3 HOH B 16 416 37 HOH HOH . F 3 HOH B 17 417 39 HOH HOH . F 3 HOH B 18 418 40 HOH HOH . F 3 HOH B 19 419 42 HOH HOH . F 3 HOH B 20 420 44 HOH HOH . F 3 HOH B 21 421 46 HOH HOH . F 3 HOH B 22 422 47 HOH HOH . F 3 HOH B 23 423 48 HOH HOH . F 3 HOH B 24 424 51 HOH HOH . F 3 HOH B 25 425 55 HOH HOH . F 3 HOH B 26 426 56 HOH HOH . F 3 HOH B 27 427 57 HOH HOH . F 3 HOH B 28 428 58 HOH HOH . F 3 HOH B 29 429 60 HOH HOH . F 3 HOH B 30 430 61 HOH HOH . F 3 HOH B 31 431 62 HOH HOH . F 3 HOH B 32 432 65 HOH HOH . F 3 HOH B 33 433 71 HOH HOH . F 3 HOH B 34 434 73 HOH HOH . F 3 HOH B 35 435 74 HOH HOH . F 3 HOH B 36 436 76 HOH HOH . F 3 HOH B 37 437 78 HOH HOH . F 3 HOH B 38 438 79 HOH HOH . F 3 HOH B 39 439 80 HOH HOH . F 3 HOH B 40 440 81 HOH HOH . F 3 HOH B 41 441 83 HOH HOH . F 3 HOH B 42 442 85 HOH HOH . F 3 HOH B 43 443 87 HOH HOH . F 3 HOH B 44 444 88 HOH HOH . F 3 HOH B 45 445 90 HOH HOH . F 3 HOH B 46 446 92 HOH HOH . F 3 HOH B 47 447 94 HOH HOH . F 3 HOH B 48 448 98 HOH HOH . F 3 HOH B 49 449 99 HOH HOH . F 3 HOH B 50 450 101 HOH HOH . F 3 HOH B 51 451 102 HOH HOH . F 3 HOH B 52 452 103 HOH HOH . F 3 HOH B 53 453 105 HOH HOH . F 3 HOH B 54 454 106 HOH HOH . F 3 HOH B 55 455 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAA 0YV . . . D 2 -1.582 38.023 24.449 1 87.06 ? NAA 0YV 301 B 1 HETATM 2 C CAS 0YV . . . D 2 -0.248 37.872 25.103 1 90.17 ? CAS 0YV 301 B 1 HETATM 3 C CAU 0YV . . . D 2 0.918 37.634 24.095 1 94.56 ? CAU 0YV 301 B 1 HETATM 4 C CBC 0YV . . . D 2 2.172 37.639 24.714 1 91.78 ? CBC 0YV 301 B 1 HETATM 5 C CAQ 0YV . . . D 2 2.733 38.87 24.969 1 86.98 ? CAQ 0YV 301 B 1 HETATM 6 C CAN 0YV . . . D 2 2.83 36.442 25.044 1 92.26 ? CAN 0YV 301 B 1 HETATM 7 C CAW 0YV . . . D 2 4.073 36.503 25.65 1 100.37 ? CAW 0YV 301 B 1 HETATM 8 BR BRC 0YV . . . D 2 5.057 35.025 26.15 1 123.11 ? BRC 0YV 301 B 1 HETATM 9 C CAL 0YV . . . D 2 4.625 37.746 25.896 1 94.14 ? CAL 0YV 301 B 1 HETATM 10 C CBA 0YV . . . D 2 3.982 38.925 25.574 1 87.67 ? CBA 0YV 301 B 1 HETATM 11 C CAG 0YV . . . D 2 4.591 40.182 25.868 1 82.76 ? CAG 0YV 301 B 1 HETATM 12 C CAE 0YV . . . D 2 5.181 41.373 26.168 1 70.18 ? CAE 0YV 301 B 1 HETATM 13 C CAY 0YV . . . D 2 5.872 42.525 26.456 1 60.74 ? CAY 0YV 301 B 1 HETATM 14 C CAP 0YV . . . D 2 5.323 43.757 26.734 1 46.31 ? CAP 0YV 301 B 1 HETATM 15 C CAJ 0YV . . . D 2 7.232 42.365 26.418 1 58.34 ? CAJ 0YV 301 B 1 HETATM 16 C CAI 0YV . . . D 2 8.047 43.424 26.674 1 50.42 ? CAI 0YV 301 B 1 HETATM 17 C CAK 0YV . . . D 2 7.491 44.633 26.946 1 43.73 ? CAK 0YV 301 B 1 HETATM 18 C CAZ 0YV . . . D 2 6.169 44.822 26.991 1 43.91 ? CAZ 0YV 301 B 1 HETATM 19 C CAF 0YV . . . D 2 5.748 46.082 27.26 1 39.73 ? CAF 0YV 301 B 1 HETATM 20 C CAH 0YV . . . D 2 5.518 46.782 27.412 1 47.89 ? CAH 0YV 301 B 1 HETATM 21 C CBB 0YV . . . D 2 4.996 48.269 27.736 1 54.62 ? CBB 0YV 301 B 1 HETATM 22 C CAR 0YV . . . D 2 3.648 48.593 27.508 1 58.62 ? CAR 0YV 301 B 1 HETATM 23 C CAM 0YV . . . D 2 5.865 49.285 28.158 1 54.65 ? CAM 0YV 301 B 1 HETATM 24 C CAX 0YV . . . D 2 5.475 50.592 28.454 1 47.68 ? CAX 0YV 301 B 1 HETATM 25 BR BRD 0YV . . . D 2 6.622 51.952 29.026 1 68.6 ? BRD 0YV 301 B 1 HETATM 26 C CAO 0YV . . . D 2 4.149 50.855 28.251 1 61.8 ? CAO 0YV 301 B 1 HETATM 27 C CBD 0YV . . . D 2 3.228 49.904 27.786 1 65.57 ? CBD 0YV 301 B 1 HETATM 28 C CAV 0YV . . . D 2 1.893 50.306 27.601 1 67.62 ? CAV 0YV 301 B 1 HETATM 29 C CAT 0YV . . . D 2 1.004 49.852 28.744 1 70.87 ? CAT 0YV 301 B 1 HETATM 30 N NAB 0YV . . . D 2 1.311 50.576 29.983 1 72.65 ? NAB 0YV 301 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #