data_4H2R # _model_server_result.job_id Vu90ipGZnrkyxK-IvufdVw _model_server_result.datetime_utc '2024-11-16 11:41:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h2r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4H2R # _exptl.entry_id 4H2R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H2R _cell.length_a 56.891 _cell.length_b 284.553 _cell.length_c 125.001 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H2R _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 62.5005 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 107 n n PA O2A FAD sing 108 n n PA O5B FAD sing 109 n n PA O3P FAD sing 110 n n O2A HOA2 FAD sing 111 n n O5B C5B FAD sing 112 n n C5B C4B FAD sing 113 n n C5B H51A FAD sing 114 n n C5B H52A FAD sing 115 n n C4B O4B FAD sing 116 n n C4B C3B FAD sing 117 n n C4B H4B FAD sing 118 n n O4B C1B FAD sing 119 n n C3B O3B FAD sing 120 n n C3B C2B FAD sing 121 n n C3B H3B FAD sing 122 n n O3B HO3A FAD sing 123 n n C2B O2B FAD sing 124 n n C2B C1B FAD sing 125 n n C2B H2B FAD sing 126 n n O2B HO2A FAD sing 127 n n C1B N9A FAD sing 128 n n C1B H1B FAD sing 129 n n N9A C8A FAD sing 130 n y N9A C4A FAD sing 131 n y C8A N7A FAD doub 132 n y C8A H8A FAD sing 133 n n N7A C5A FAD sing 134 n y C5A C6A FAD sing 135 n y C5A C4A FAD doub 136 n y C6A N6A FAD sing 137 n n C6A N1A FAD doub 138 n y N6A H61A FAD sing 139 n n N6A H62A FAD sing 140 n n N1A C2A FAD sing 141 n y C2A N3A FAD doub 142 n y C2A H2A FAD sing 143 n n N3A C4A FAD sing 144 n y N1 C2 FAD sing 145 n n N1 C10 FAD doub 146 n n C2 O2 FAD doub 147 n n C2 N3 FAD sing 148 n n N3 C4 FAD sing 149 n n N3 HN3 FAD sing 150 n n C4 O4 FAD doub 151 n n C4 C4X FAD sing 152 n n C4X N5 FAD doub 153 n n C4X C10 FAD sing 154 n n N5 C5X FAD sing 155 n n C5X C6 FAD doub 156 n y C5X C9A FAD sing 157 n y C6 C7 FAD sing 158 n y C6 H6 FAD sing 159 n n C7 C7M FAD sing 160 n n C7 C8 FAD doub 161 n y C7M HM71 FAD sing 162 n n C7M HM72 FAD sing 163 n n C7M HM73 FAD sing 164 n n C8 C8M FAD sing 165 n n C8 C9 FAD sing 166 n y C8M HM81 FAD sing 167 n n C8M HM82 FAD sing 168 n n C8M HM83 FAD sing 169 n n C9 C9A FAD doub 170 n y C9 H9 FAD sing 171 n n C9A N10 FAD sing 172 n n N10 C10 FAD sing 173 n n N10 C1' FAD sing 174 n n C1' C2' FAD sing 175 n n C1' "H1'1" FAD sing 176 n n C1' "H1'2" FAD sing 177 n n C2' O2' FAD sing 178 n n C2' C3' FAD sing 179 n n C2' H2' FAD sing 180 n n O2' HO2' FAD sing 181 n n C3' O3' FAD sing 182 n n C3' C4' FAD sing 183 n n C3' H3' FAD sing 184 n n O3' HO3' FAD sing 185 n n C4' O4' FAD sing 186 n n C4' C5' FAD sing 187 n n C4' H4' FAD sing 188 n n O4' HO4' FAD sing 189 n n C5' O5' FAD sing 190 n n C5' "H5'1" FAD sing 191 n n C5' "H5'2" FAD sing 192 n n O5' P FAD sing 193 n n P O1P FAD doub 194 n n P O2P FAD sing 195 n n P O3P FAD sing 196 n n O2P HOP2 FAD sing 197 n n # _atom_sites.entry_id 4H2R _atom_sites.fract_transf_matrix[1][1] 0.017577 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 401 380 FAD FAD . D 3 BME A 1 402 381 BME BME . E 4 5HN A 1 403 382 5HN 5HN . F 5 GOL A 1 404 3 GOL GOL . G 5 GOL A 1 405 4 GOL GOL . H 5 GOL A 1 406 5 GOL GOL . I 2 FAD B 1 401 380 FAD FAD . J 5 GOL B 1 402 1 GOL GOL . K 5 GOL B 1 403 2 GOL GOL . L 6 HOH A 1 501 1 HOH HOH . L 6 HOH A 2 502 3 HOH HOH . L 6 HOH A 3 503 4 HOH HOH . L 6 HOH A 4 504 5 HOH HOH . L 6 HOH A 5 505 6 HOH HOH . L 6 HOH A 6 506 8 HOH HOH . L 6 HOH A 7 507 9 HOH HOH . L 6 HOH A 8 508 11 HOH HOH . L 6 HOH A 9 509 13 HOH HOH . L 6 HOH A 10 510 15 HOH HOH . L 6 HOH A 11 511 16 HOH HOH . L 6 HOH A 12 512 17 HOH HOH . L 6 HOH A 13 513 19 HOH HOH . L 6 HOH A 14 514 20 HOH HOH . L 6 HOH A 15 515 21 HOH HOH . L 6 HOH A 16 516 22 HOH HOH . L 6 HOH A 17 517 23 HOH HOH . L 6 HOH A 18 518 24 HOH HOH . L 6 HOH A 19 519 25 HOH HOH . L 6 HOH A 20 520 26 HOH HOH . L 6 HOH A 21 521 27 HOH HOH . L 6 HOH A 22 522 28 HOH HOH . L 6 HOH A 23 523 29 HOH HOH . L 6 HOH A 24 524 30 HOH HOH . L 6 HOH A 25 525 31 HOH HOH . L 6 HOH A 26 526 32 HOH HOH . L 6 HOH A 27 527 33 HOH HOH . L 6 HOH A 28 528 34 HOH HOH . L 6 HOH A 29 529 36 HOH HOH . L 6 HOH A 30 530 37 HOH HOH . L 6 HOH A 31 531 38 HOH HOH . L 6 HOH A 32 532 39 HOH HOH . L 6 HOH A 33 533 40 HOH HOH . L 6 HOH A 34 534 42 HOH HOH . L 6 HOH A 35 535 43 HOH HOH . L 6 HOH A 36 536 45 HOH HOH . L 6 HOH A 37 537 46 HOH HOH . L 6 HOH A 38 538 48 HOH HOH . L 6 HOH A 39 539 50 HOH HOH . L 6 HOH A 40 540 51 HOH HOH . L 6 HOH A 41 541 52 HOH HOH . L 6 HOH A 42 542 54 HOH HOH . L 6 HOH A 43 543 55 HOH HOH . L 6 HOH A 44 544 56 HOH HOH . L 6 HOH A 45 545 57 HOH HOH . L 6 HOH A 46 546 58 HOH HOH . L 6 HOH A 47 547 59 HOH HOH . L 6 HOH A 48 548 60 HOH HOH . L 6 HOH A 49 549 73 HOH HOH . L 6 HOH A 50 550 74 HOH HOH . L 6 HOH A 51 551 75 HOH HOH . L 6 HOH A 52 552 80 HOH HOH . L 6 HOH A 53 553 81 HOH HOH . L 6 HOH A 54 554 82 HOH HOH . L 6 HOH A 55 555 83 HOH HOH . L 6 HOH A 56 556 84 HOH HOH . L 6 HOH A 57 557 85 HOH HOH . L 6 HOH A 58 558 86 HOH HOH . M 6 HOH B 1 501 2 HOH HOH . M 6 HOH B 2 502 7 HOH HOH . M 6 HOH B 3 503 10 HOH HOH . M 6 HOH B 4 504 12 HOH HOH . M 6 HOH B 5 505 14 HOH HOH . M 6 HOH B 6 506 18 HOH HOH . M 6 HOH B 7 507 35 HOH HOH . M 6 HOH B 8 508 41 HOH HOH . M 6 HOH B 9 509 44 HOH HOH . M 6 HOH B 10 510 47 HOH HOH . M 6 HOH B 11 511 53 HOH HOH . M 6 HOH B 12 512 63 HOH HOH . M 6 HOH B 13 513 64 HOH HOH . M 6 HOH B 14 514 65 HOH HOH . M 6 HOH B 15 515 66 HOH HOH . M 6 HOH B 16 516 67 HOH HOH . M 6 HOH B 17 517 68 HOH HOH . M 6 HOH B 18 518 69 HOH HOH . M 6 HOH B 19 519 70 HOH HOH . M 6 HOH B 20 520 71 HOH HOH . M 6 HOH B 21 521 72 HOH HOH . M 6 HOH B 22 522 76 HOH HOH . M 6 HOH B 23 523 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 2 -18.396 -60.853 0.187 1 36.01 ? PA FAD 401 A 1 HETATM 2 O O1A FAD . . . C 2 -18.526 -59.662 1.029 1 32.85 ? O1A FAD 401 A 1 HETATM 3 O O2A FAD . . . C 2 -18.433 -62.205 0.829 1 39.59 ? O2A FAD 401 A 1 HETATM 4 O O5B FAD . . . C 2 -19.585 -60.698 -0.848 1 33.91 ? O5B FAD 401 A 1 HETATM 5 C C5B FAD . . . C 2 -20.168 -61.468 -1.885 1 32.98 ? C5B FAD 401 A 1 HETATM 6 C C4B FAD . . . C 2 -21.644 -61.074 -1.77 1 37.18 ? C4B FAD 401 A 1 HETATM 7 O O4B FAD . . . C 2 -21.696 -62.454 -2.361 1 38.14 ? O4B FAD 401 A 1 HETATM 8 C C3B FAD . . . C 2 -22.806 -61.363 -0.777 1 32.73 ? C3B FAD 401 A 1 HETATM 9 O O3B FAD . . . C 2 -23.967 -60.644 -1.078 1 39.76 ? O3B FAD 401 A 1 HETATM 10 C C2B FAD . . . C 2 -22.804 -62.842 -0.983 1 39.33 ? C2B FAD 401 A 1 HETATM 11 O O2B FAD . . . C 2 -24.055 -63.294 -0.469 1 37.01 ? O2B FAD 401 A 1 HETATM 12 C C1B FAD . . . C 2 -23.063 -62.801 -2.472 1 35.35 ? C1B FAD 401 A 1 HETATM 13 N N9A FAD . . . C 2 -23.112 -64.167 -3.068 1 36.3 ? N9A FAD 401 A 1 HETATM 14 C C8A FAD . . . C 2 -22.464 -65.181 -2.484 1 38.95 ? C8A FAD 401 A 1 HETATM 15 N N7A FAD . . . C 2 -22.537 -66.265 -3.258 1 34.77 ? N7A FAD 401 A 1 HETATM 16 C C5A FAD . . . C 2 -23.178 -65.919 -4.368 1 36.22 ? C5A FAD 401 A 1 HETATM 17 C C6A FAD . . . C 2 -23.504 -66.612 -5.461 1 38.12 ? C6A FAD 401 A 1 HETATM 18 N N6A FAD . . . C 2 -23.16 -67.897 -5.511 1 39.46 ? N6A FAD 401 A 1 HETATM 19 N N1A FAD . . . C 2 -24.158 -66.054 -6.483 1 40.79 ? N1A FAD 401 A 1 HETATM 20 C C2A FAD . . . C 2 -24.506 -64.715 -6.412 1 38.6 ? C2A FAD 401 A 1 HETATM 21 N N3A FAD . . . C 2 -24.147 -64.017 -5.263 1 40.06 ? N3A FAD 401 A 1 HETATM 22 C C4A FAD . . . C 2 -23.476 -64.618 -4.273 1 38 ? C4A FAD 401 A 1 HETATM 23 N N1 FAD . . . C 2 -11.583 -55.625 4.879 1 33.04 ? N1 FAD 401 A 1 HETATM 24 C C2 FAD . . . C 2 -11.261 -54.245 4.877 1 33.37 ? C2 FAD 401 A 1 HETATM 25 O O2 FAD . . . C 2 -10.999 -53.651 3.839 1 33.25 ? O2 FAD 401 A 1 HETATM 26 N N3 FAD . . . C 2 -11.22 -53.521 6.047 1 27.01 ? N3 FAD 401 A 1 HETATM 27 C C4 FAD . . . C 2 -11.503 -54.144 7.246 1 32.92 ? C4 FAD 401 A 1 HETATM 28 O O4 FAD . . . C 2 -11.465 -53.497 8.29 1 40.43 ? O4 FAD 401 A 1 HETATM 29 C C4X FAD . . . C 2 -11.82 -55.487 7.272 1 35.35 ? C4X FAD 401 A 1 HETATM 30 N N5 FAD . . . C 2 -12.095 -56.072 8.501 1 35.53 ? N5 FAD 401 A 1 HETATM 31 C C5X FAD . . . C 2 -12.41 -57.433 8.527 1 39.3 ? C5X FAD 401 A 1 HETATM 32 C C6 FAD . . . C 2 -12.694 -58.081 9.734 1 37.62 ? C6 FAD 401 A 1 HETATM 33 C C7 FAD . . . C 2 -13.014 -59.442 9.723 1 39.05 ? C7 FAD 401 A 1 HETATM 34 C C7M FAD . . . C 2 -13.297 -60.081 10.922 1 35.95 ? C7M FAD 401 A 1 HETATM 35 C C8 FAD . . . C 2 -13.056 -60.167 8.52 1 40.11 ? C8 FAD 401 A 1 HETATM 36 C C8M FAD . . . C 2 -13.38 -61.558 8.488 1 33.9 ? C8M FAD 401 A 1 HETATM 37 C C9 FAD . . . C 2 -12.77 -59.496 7.339 1 31.68 ? C9 FAD 401 A 1 HETATM 38 C C9A FAD . . . C 2 -12.453 -58.139 7.328 1 34.69 ? C9A FAD 401 A 1 HETATM 39 N N10 FAD . . . C 2 -12.181 -57.531 6.146 1 36.99 ? N10 FAD 401 A 1 HETATM 40 C C10 FAD . . . C 2 -11.862 -56.237 6.096 1 33.88 ? C10 FAD 401 A 1 HETATM 41 C C1' FAD . . . C 2 -12.246 -58.351 4.906 1 35.74 ? C1' FAD 401 A 1 HETATM 42 C C2' FAD . . . C 2 -13.479 -57.96 4.076 1 35.66 ? C2' FAD 401 A 1 HETATM 43 O O2' FAD . . . C 2 -14.692 -58.18 4.832 1 32.13 ? O2' FAD 401 A 1 HETATM 44 C C3' FAD . . . C 2 -13.554 -58.838 2.836 1 33.71 ? C3' FAD 401 A 1 HETATM 45 O O3' FAD . . . C 2 -12.31 -58.907 2.179 1 39.79 ? O3' FAD 401 A 1 HETATM 46 C C4' FAD . . . C 2 -14.69 -58.323 1.92 1 36.59 ? C4' FAD 401 A 1 HETATM 47 O O4' FAD . . . C 2 -15.952 -58.304 2.597 1 37.26 ? O4' FAD 401 A 1 HETATM 48 C C5' FAD . . . C 2 -14.761 -59.171 0.652 1 35.21 ? C5' FAD 401 A 1 HETATM 49 O O5' FAD . . . C 2 -15.846 -58.702 -0.129 1 34.96 ? O5' FAD 401 A 1 HETATM 50 P P FAD . . . C 2 -16.369 -59.487 -1.443 1 34.75 ? P FAD 401 A 1 HETATM 51 O O1P FAD . . . C 2 -17.407 -58.665 -2.096 1 35.85 ? O1P FAD 401 A 1 HETATM 52 O O2P FAD . . . C 2 -15.233 -60.001 -2.245 1 31.61 ? O2P FAD 401 A 1 HETATM 53 O O3P FAD . . . C 2 -17.064 -60.74 -0.726 1 33.23 ? O3P FAD 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 53 #