data_4H2R # _model_server_result.job_id rcbiFhLeLA1MFM--Mrj7mw _model_server_result.datetime_utc '2024-11-16 11:51:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h2r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 4H2R # _exptl.entry_id 4H2R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H2R _cell.length_a 56.891 _cell.length_b 284.553 _cell.length_c 125.001 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H2R _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 62.5005 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 107 n n PA O2A FAD sing 108 n n PA O5B FAD sing 109 n n PA O3P FAD sing 110 n n O2A HOA2 FAD sing 111 n n O5B C5B FAD sing 112 n n C5B C4B FAD sing 113 n n C5B H51A FAD sing 114 n n C5B H52A FAD sing 115 n n C4B O4B FAD sing 116 n n C4B C3B FAD sing 117 n n C4B H4B FAD sing 118 n n O4B C1B FAD sing 119 n n C3B O3B FAD sing 120 n n C3B C2B FAD sing 121 n n C3B H3B FAD sing 122 n n O3B HO3A FAD sing 123 n n C2B O2B FAD sing 124 n n C2B C1B FAD sing 125 n n C2B H2B FAD sing 126 n n O2B HO2A FAD sing 127 n n C1B N9A FAD sing 128 n n C1B H1B FAD sing 129 n n N9A C8A FAD sing 130 n y N9A C4A FAD sing 131 n y C8A N7A FAD doub 132 n y C8A H8A FAD sing 133 n n N7A C5A FAD sing 134 n y C5A C6A FAD sing 135 n y C5A C4A FAD doub 136 n y C6A N6A FAD sing 137 n n C6A N1A FAD doub 138 n y N6A H61A FAD sing 139 n n N6A H62A FAD sing 140 n n N1A C2A FAD sing 141 n y C2A N3A FAD doub 142 n y C2A H2A FAD sing 143 n n N3A C4A FAD sing 144 n y N1 C2 FAD sing 145 n n N1 C10 FAD doub 146 n n C2 O2 FAD doub 147 n n C2 N3 FAD sing 148 n n N3 C4 FAD sing 149 n n N3 HN3 FAD sing 150 n n C4 O4 FAD doub 151 n n C4 C4X FAD sing 152 n n C4X N5 FAD doub 153 n n C4X C10 FAD sing 154 n n N5 C5X FAD sing 155 n n C5X C6 FAD doub 156 n y C5X C9A FAD sing 157 n y C6 C7 FAD sing 158 n y C6 H6 FAD sing 159 n n C7 C7M FAD sing 160 n n C7 C8 FAD doub 161 n y C7M HM71 FAD sing 162 n n C7M HM72 FAD sing 163 n n C7M HM73 FAD sing 164 n n C8 C8M FAD sing 165 n n C8 C9 FAD sing 166 n y C8M HM81 FAD sing 167 n n C8M HM82 FAD sing 168 n n C8M HM83 FAD sing 169 n n C9 C9A FAD doub 170 n y C9 H9 FAD sing 171 n n C9A N10 FAD sing 172 n n N10 C10 FAD sing 173 n n N10 C1' FAD sing 174 n n C1' C2' FAD sing 175 n n C1' "H1'1" FAD sing 176 n n C1' "H1'2" FAD sing 177 n n C2' O2' FAD sing 178 n n C2' C3' FAD sing 179 n n C2' H2' FAD sing 180 n n O2' HO2' FAD sing 181 n n C3' O3' FAD sing 182 n n C3' C4' FAD sing 183 n n C3' H3' FAD sing 184 n n O3' HO3' FAD sing 185 n n C4' O4' FAD sing 186 n n C4' C5' FAD sing 187 n n C4' H4' FAD sing 188 n n O4' HO4' FAD sing 189 n n C5' O5' FAD sing 190 n n C5' "H5'1" FAD sing 191 n n C5' "H5'2" FAD sing 192 n n O5' P FAD sing 193 n n P O1P FAD doub 194 n n P O2P FAD sing 195 n n P O3P FAD sing 196 n n O2P HOP2 FAD sing 197 n n # _atom_sites.entry_id 4H2R _atom_sites.fract_transf_matrix[1][1] 0.017577 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 401 380 FAD FAD . D 3 BME A 1 402 381 BME BME . E 4 5HN A 1 403 382 5HN 5HN . F 5 GOL A 1 404 3 GOL GOL . G 5 GOL A 1 405 4 GOL GOL . H 5 GOL A 1 406 5 GOL GOL . I 2 FAD B 1 401 380 FAD FAD . J 5 GOL B 1 402 1 GOL GOL . K 5 GOL B 1 403 2 GOL GOL . L 6 HOH A 1 501 1 HOH HOH . L 6 HOH A 2 502 3 HOH HOH . L 6 HOH A 3 503 4 HOH HOH . L 6 HOH A 4 504 5 HOH HOH . L 6 HOH A 5 505 6 HOH HOH . L 6 HOH A 6 506 8 HOH HOH . L 6 HOH A 7 507 9 HOH HOH . L 6 HOH A 8 508 11 HOH HOH . L 6 HOH A 9 509 13 HOH HOH . L 6 HOH A 10 510 15 HOH HOH . L 6 HOH A 11 511 16 HOH HOH . L 6 HOH A 12 512 17 HOH HOH . L 6 HOH A 13 513 19 HOH HOH . L 6 HOH A 14 514 20 HOH HOH . L 6 HOH A 15 515 21 HOH HOH . L 6 HOH A 16 516 22 HOH HOH . L 6 HOH A 17 517 23 HOH HOH . L 6 HOH A 18 518 24 HOH HOH . L 6 HOH A 19 519 25 HOH HOH . L 6 HOH A 20 520 26 HOH HOH . L 6 HOH A 21 521 27 HOH HOH . L 6 HOH A 22 522 28 HOH HOH . L 6 HOH A 23 523 29 HOH HOH . L 6 HOH A 24 524 30 HOH HOH . L 6 HOH A 25 525 31 HOH HOH . L 6 HOH A 26 526 32 HOH HOH . L 6 HOH A 27 527 33 HOH HOH . L 6 HOH A 28 528 34 HOH HOH . L 6 HOH A 29 529 36 HOH HOH . L 6 HOH A 30 530 37 HOH HOH . L 6 HOH A 31 531 38 HOH HOH . L 6 HOH A 32 532 39 HOH HOH . L 6 HOH A 33 533 40 HOH HOH . L 6 HOH A 34 534 42 HOH HOH . L 6 HOH A 35 535 43 HOH HOH . L 6 HOH A 36 536 45 HOH HOH . L 6 HOH A 37 537 46 HOH HOH . L 6 HOH A 38 538 48 HOH HOH . L 6 HOH A 39 539 50 HOH HOH . L 6 HOH A 40 540 51 HOH HOH . L 6 HOH A 41 541 52 HOH HOH . L 6 HOH A 42 542 54 HOH HOH . L 6 HOH A 43 543 55 HOH HOH . L 6 HOH A 44 544 56 HOH HOH . L 6 HOH A 45 545 57 HOH HOH . L 6 HOH A 46 546 58 HOH HOH . L 6 HOH A 47 547 59 HOH HOH . L 6 HOH A 48 548 60 HOH HOH . L 6 HOH A 49 549 73 HOH HOH . L 6 HOH A 50 550 74 HOH HOH . L 6 HOH A 51 551 75 HOH HOH . L 6 HOH A 52 552 80 HOH HOH . L 6 HOH A 53 553 81 HOH HOH . L 6 HOH A 54 554 82 HOH HOH . L 6 HOH A 55 555 83 HOH HOH . L 6 HOH A 56 556 84 HOH HOH . L 6 HOH A 57 557 85 HOH HOH . L 6 HOH A 58 558 86 HOH HOH . M 6 HOH B 1 501 2 HOH HOH . M 6 HOH B 2 502 7 HOH HOH . M 6 HOH B 3 503 10 HOH HOH . M 6 HOH B 4 504 12 HOH HOH . M 6 HOH B 5 505 14 HOH HOH . M 6 HOH B 6 506 18 HOH HOH . M 6 HOH B 7 507 35 HOH HOH . M 6 HOH B 8 508 41 HOH HOH . M 6 HOH B 9 509 44 HOH HOH . M 6 HOH B 10 510 47 HOH HOH . M 6 HOH B 11 511 53 HOH HOH . M 6 HOH B 12 512 63 HOH HOH . M 6 HOH B 13 513 64 HOH HOH . M 6 HOH B 14 514 65 HOH HOH . M 6 HOH B 15 515 66 HOH HOH . M 6 HOH B 16 516 67 HOH HOH . M 6 HOH B 17 517 68 HOH HOH . M 6 HOH B 18 518 69 HOH HOH . M 6 HOH B 19 519 70 HOH HOH . M 6 HOH B 20 520 71 HOH HOH . M 6 HOH B 21 521 72 HOH HOH . M 6 HOH B 22 522 76 HOH HOH . M 6 HOH B 23 523 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . I 2 4.714 -14.432 -4.418 1 53.18 ? PA FAD 401 B 1 HETATM 2 O O1A FAD . . . I 2 5.179 -15.644 -3.714 1 48.16 ? O1A FAD 401 B 1 HETATM 3 O O2A FAD . . . I 2 5.003 -13.08 -3.835 1 57.98 ? O2A FAD 401 B 1 HETATM 4 O O5B FAD . . . I 2 5.423 -14.602 -5.828 1 50.36 ? O5B FAD 401 B 1 HETATM 5 C C5B FAD . . . I 2 5.499 -13.822 -7.005 1 48.56 ? C5B FAD 401 B 1 HETATM 6 C C4B FAD . . . I 2 6.826 -14.262 -7.648 1 53.02 ? C4B FAD 401 B 1 HETATM 7 O O4B FAD . . . I 2 6.594 -12.878 -8.193 1 55.7 ? O4B FAD 401 B 1 HETATM 8 C C3B FAD . . . I 2 8.342 -14.007 -7.349 1 53.28 ? C3B FAD 401 B 1 HETATM 9 O O3B FAD . . . I 2 9.231 -14.706 -8.2 1 59.32 ? O3B FAD 401 B 1 HETATM 10 C C2B FAD . . . I 2 8.22 -12.538 -7.531 1 60.17 ? C2B FAD 401 B 1 HETATM 11 O O2B FAD . . . I 2 9.562 -12.053 -7.617 1 55.27 ? O2B FAD 401 B 1 HETATM 12 C C1B FAD . . . I 2 7.701 -12.588 -8.989 1 52.48 ? C1B FAD 401 B 1 HETATM 13 N N9A FAD . . . I 2 7.436 -11.213 -9.532 1 59.17 ? N9A FAD 401 B 1 HETATM 14 C C8A FAD . . . I 2 6.931 -10.292 -8.71 1 59.88 ? C8A FAD 401 B 1 HETATM 15 N N7A FAD . . . I 2 6.756 -9.153 -9.379 1 58.63 ? N7A FAD 401 B 1 HETATM 16 C C5A FAD . . . I 2 7.155 -9.354 -10.63 1 59.27 ? C5A FAD 401 B 1 HETATM 17 C C6A FAD . . . I 2 7.177 -8.535 -11.682 1 59.44 ? C6A FAD 401 B 1 HETATM 18 N N6A FAD . . . I 2 6.731 -7.298 -11.494 1 57.48 ? N6A FAD 401 B 1 HETATM 19 N N1A FAD . . . I 2 7.621 -8.936 -12.872 1 59.5 ? N1A FAD 401 B 1 HETATM 20 C C2A FAD . . . I 2 8.077 -10.245 -13.02 1 53.45 ? C2A FAD 401 B 1 HETATM 21 N N3A FAD . . . I 2 8.044 -11.076 -11.907 1 57.96 ? N3A FAD 401 B 1 HETATM 22 C C4A FAD . . . I 2 7.606 -10.613 -10.723 1 58.85 ? C4A FAD 401 B 1 HETATM 23 N N1 FAD . . . I 2 0.116 -19.651 2.463 1 44.54 ? N1 FAD 401 B 1 HETATM 24 C C2 FAD . . . I 2 -0.155 -21.008 2.588 1 44.04 ? C2 FAD 401 B 1 HETATM 25 O O2 FAD . . . I 2 -0.8 -21.623 1.735 1 48.15 ? O2 FAD 401 B 1 HETATM 26 N N3 FAD . . . I 2 0.307 -21.689 3.698 1 44.21 ? N3 FAD 401 B 1 HETATM 27 C C4 FAD . . . I 2 1.032 -21.065 4.687 1 45.21 ? C4 FAD 401 B 1 HETATM 28 O O4 FAD . . . I 2 1.407 -21.73 5.652 1 40.62 ? O4 FAD 401 B 1 HETATM 29 C C4X FAD . . . I 2 1.311 -19.702 4.571 1 52.52 ? C4X FAD 401 B 1 HETATM 30 N N5 FAD . . . I 2 2.044 -19.042 5.572 1 47.37 ? N5 FAD 401 B 1 HETATM 31 C C5X FAD . . . I 2 2.308 -17.692 5.429 1 51.47 ? C5X FAD 401 B 1 HETATM 32 C C6 FAD . . . I 2 3.03 -16.995 6.39 1 53.99 ? C6 FAD 401 B 1 HETATM 33 C C7 FAD . . . I 2 3.27 -15.63 6.21 1 62.16 ? C7 FAD 401 B 1 HETATM 34 C C7M FAD . . . I 2 3.989 -14.942 7.169 1 58.26 ? C7M FAD 401 B 1 HETATM 35 C C8 FAD . . . I 2 2.798 -14.955 5.072 1 62.71 ? C8 FAD 401 B 1 HETATM 36 C C8M FAD . . . I 2 3.023 -13.583 4.858 1 52.38 ? C8M FAD 401 B 1 HETATM 37 C C9 FAD . . . I 2 2.08 -15.675 4.126 1 58.56 ? C9 FAD 401 B 1 HETATM 38 C C9A FAD . . . I 2 1.836 -17.037 4.3 1 53.48 ? C9A FAD 401 B 1 HETATM 39 N N10 FAD . . . I 2 1.129 -17.68 3.362 1 50.51 ? N10 FAD 401 B 1 HETATM 40 C C10 FAD . . . I 2 0.86 -18.992 3.458 1 49.58 ? C10 FAD 401 B 1 HETATM 41 C C1' FAD . . . I 2 0.707 -16.862 2.211 1 49.09 ? C1' FAD 401 B 1 HETATM 42 C C2' FAD . . . I 2 1.496 -17.312 0.978 1 47.69 ? C2' FAD 401 B 1 HETATM 43 O O2' FAD . . . I 2 2.91 -17.201 1.194 1 45.59 ? O2' FAD 401 B 1 HETATM 44 C C3' FAD . . . I 2 1.134 -16.438 -0.19 1 44.18 ? C3' FAD 401 B 1 HETATM 45 O O3' FAD . . . I 2 -0.283 -16.293 -0.327 1 47.32 ? O3' FAD 401 B 1 HETATM 46 C C4' FAD . . . I 2 1.852 -16.997 -1.433 1 48.13 ? C4' FAD 401 B 1 HETATM 47 O O4' FAD . . . I 2 3.274 -17.085 -1.219 1 46.68 ? O4' FAD 401 B 1 HETATM 48 C C5' FAD . . . I 2 1.482 -16.104 -2.622 1 48.6 ? C5' FAD 401 B 1 HETATM 49 O O5' FAD . . . I 2 2.195 -16.534 -3.76 1 48.95 ? O5' FAD 401 B 1 HETATM 50 P P FAD . . . I 2 2.175 -15.71 -5.151 1 45.18 ? P FAD 401 B 1 HETATM 51 O O1P FAD . . . I 2 2.877 -16.557 -6.13 1 44.9 ? O1P FAD 401 B 1 HETATM 52 O O2P FAD . . . I 2 0.832 -15.169 -5.475 1 36.39 ? O2P FAD 401 B 1 HETATM 53 O O3P FAD . . . I 2 3.114 -14.486 -4.737 1 39.35 ? O3P FAD 401 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #