data_4H2R # _model_server_result.job_id H3m2ph48G65VgAY5Py8GSQ _model_server_result.datetime_utc '2024-11-16 11:53:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h2r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":402}' # _entry.id 4H2R # _exptl.entry_id 4H2R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H2R _cell.length_a 56.891 _cell.length_b 284.553 _cell.length_c 125.001 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H2R _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 62.5005 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 J N N ? 5 K N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 244 n n C1 C2 GOL sing 245 n n C1 H11 GOL sing 246 n n C1 H12 GOL sing 247 n n O1 HO1 GOL sing 248 n n C2 O2 GOL sing 249 n n C2 C3 GOL sing 250 n n C2 H2 GOL sing 251 n n O2 HO2 GOL sing 252 n n C3 O3 GOL sing 253 n n C3 H31 GOL sing 254 n n C3 H32 GOL sing 255 n n O3 HO3 GOL sing 256 n n # _atom_sites.entry_id 4H2R _atom_sites.fract_transf_matrix[1][1] 0.017577 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 401 380 FAD FAD . D 3 BME A 1 402 381 BME BME . E 4 5HN A 1 403 382 5HN 5HN . F 5 GOL A 1 404 3 GOL GOL . G 5 GOL A 1 405 4 GOL GOL . H 5 GOL A 1 406 5 GOL GOL . I 2 FAD B 1 401 380 FAD FAD . J 5 GOL B 1 402 1 GOL GOL . K 5 GOL B 1 403 2 GOL GOL . L 6 HOH A 1 501 1 HOH HOH . L 6 HOH A 2 502 3 HOH HOH . L 6 HOH A 3 503 4 HOH HOH . L 6 HOH A 4 504 5 HOH HOH . L 6 HOH A 5 505 6 HOH HOH . L 6 HOH A 6 506 8 HOH HOH . L 6 HOH A 7 507 9 HOH HOH . L 6 HOH A 8 508 11 HOH HOH . L 6 HOH A 9 509 13 HOH HOH . L 6 HOH A 10 510 15 HOH HOH . L 6 HOH A 11 511 16 HOH HOH . L 6 HOH A 12 512 17 HOH HOH . L 6 HOH A 13 513 19 HOH HOH . L 6 HOH A 14 514 20 HOH HOH . L 6 HOH A 15 515 21 HOH HOH . L 6 HOH A 16 516 22 HOH HOH . L 6 HOH A 17 517 23 HOH HOH . L 6 HOH A 18 518 24 HOH HOH . L 6 HOH A 19 519 25 HOH HOH . L 6 HOH A 20 520 26 HOH HOH . L 6 HOH A 21 521 27 HOH HOH . L 6 HOH A 22 522 28 HOH HOH . L 6 HOH A 23 523 29 HOH HOH . L 6 HOH A 24 524 30 HOH HOH . L 6 HOH A 25 525 31 HOH HOH . L 6 HOH A 26 526 32 HOH HOH . L 6 HOH A 27 527 33 HOH HOH . L 6 HOH A 28 528 34 HOH HOH . L 6 HOH A 29 529 36 HOH HOH . L 6 HOH A 30 530 37 HOH HOH . L 6 HOH A 31 531 38 HOH HOH . L 6 HOH A 32 532 39 HOH HOH . L 6 HOH A 33 533 40 HOH HOH . L 6 HOH A 34 534 42 HOH HOH . L 6 HOH A 35 535 43 HOH HOH . L 6 HOH A 36 536 45 HOH HOH . L 6 HOH A 37 537 46 HOH HOH . L 6 HOH A 38 538 48 HOH HOH . L 6 HOH A 39 539 50 HOH HOH . L 6 HOH A 40 540 51 HOH HOH . L 6 HOH A 41 541 52 HOH HOH . L 6 HOH A 42 542 54 HOH HOH . L 6 HOH A 43 543 55 HOH HOH . L 6 HOH A 44 544 56 HOH HOH . L 6 HOH A 45 545 57 HOH HOH . L 6 HOH A 46 546 58 HOH HOH . L 6 HOH A 47 547 59 HOH HOH . L 6 HOH A 48 548 60 HOH HOH . L 6 HOH A 49 549 73 HOH HOH . L 6 HOH A 50 550 74 HOH HOH . L 6 HOH A 51 551 75 HOH HOH . L 6 HOH A 52 552 80 HOH HOH . L 6 HOH A 53 553 81 HOH HOH . L 6 HOH A 54 554 82 HOH HOH . L 6 HOH A 55 555 83 HOH HOH . L 6 HOH A 56 556 84 HOH HOH . L 6 HOH A 57 557 85 HOH HOH . L 6 HOH A 58 558 86 HOH HOH . M 6 HOH B 1 501 2 HOH HOH . M 6 HOH B 2 502 7 HOH HOH . M 6 HOH B 3 503 10 HOH HOH . M 6 HOH B 4 504 12 HOH HOH . M 6 HOH B 5 505 14 HOH HOH . M 6 HOH B 6 506 18 HOH HOH . M 6 HOH B 7 507 35 HOH HOH . M 6 HOH B 8 508 41 HOH HOH . M 6 HOH B 9 509 44 HOH HOH . M 6 HOH B 10 510 47 HOH HOH . M 6 HOH B 11 511 53 HOH HOH . M 6 HOH B 12 512 63 HOH HOH . M 6 HOH B 13 513 64 HOH HOH . M 6 HOH B 14 514 65 HOH HOH . M 6 HOH B 15 515 66 HOH HOH . M 6 HOH B 16 516 67 HOH HOH . M 6 HOH B 17 517 68 HOH HOH . M 6 HOH B 18 518 69 HOH HOH . M 6 HOH B 19 519 70 HOH HOH . M 6 HOH B 20 520 71 HOH HOH . M 6 HOH B 21 521 72 HOH HOH . M 6 HOH B 22 522 76 HOH HOH . M 6 HOH B 23 523 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 5 -10.426 -36.231 -1.476 1 49.64 ? C1 GOL 402 B 1 HETATM 2 O O1 GOL . . . J 5 -10.959 -35.269 -2.381 1 48.95 ? O1 GOL 402 B 1 HETATM 3 C C2 GOL . . . J 5 -9.078 -36.834 -1.921 1 53.18 ? C2 GOL 402 B 1 HETATM 4 O O2 GOL . . . J 5 -8.043 -36.492 -1.012 1 49.61 ? O2 GOL 402 B 1 HETATM 5 C C3 GOL . . . J 5 -9.158 -38.364 -2.049 1 57.54 ? C3 GOL 402 B 1 HETATM 6 O O3 GOL . . . J 5 -7.939 -38.966 -1.643 1 58.61 ? O3 GOL 402 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 69 _model_server_stats.query_time_ms 542 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #