data_4H38 # _model_server_result.job_id 5nuVQk06xksn-1HVz-KL8w _model_server_result.datetime_utc '2024-11-02 19:36:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4H38 # _exptl.entry_id 4H38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 471.322 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5-bromo-2-{[3-(octyloxy)benzyl]oxy}phenyl)phosphonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H38 _cell.length_a 63.266 _cell.length_b 68.824 _cell.length_c 111.492 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 Br O5 P' _chem_comp.formula_weight 471.322 _chem_comp.id 0YX _chem_comp.mon_nstd_flag . _chem_comp.name '(5-bromo-2-{[3-(octyloxy)benzyl]oxy}phenyl)phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAF CAG 0YX doub 1 n y CAF CAH 0YX sing 2 n y CAG CAX 0YX sing 3 n y CAH CAY 0YX doub 4 n y CAX CAT 0YX sing 5 n n CAX CAK 0YX doub 6 n y CAR CAS 0YX sing 7 n n CAR CAQ 0YX sing 8 n n CAS OAU 0YX sing 9 n n CAY CAK 0YX sing 10 n y CAY OAU 0YX sing 11 n n CAT OAV 0YX sing 12 n n CAP CAQ 0YX sing 13 n n CAP CAO 0YX sing 14 n n CAJ CAI 0YX doub 15 n y CAJ CAZ 0YX sing 16 n y OAV CAZ 0YX sing 17 n n CAM CAN 0YX sing 18 n n CAM CAA 0YX sing 19 n n CAO CAN 0YX sing 20 n n CAI CAW 0YX sing 21 n y CAZ CBA 0YX doub 22 n y CAW CAL 0YX doub 23 n y CAW BRE 0YX sing 24 n n CBA CAL 0YX sing 25 n y CBA PBB 0YX sing 26 n n PBB OAB 0YX doub 27 n n PBB OAC 0YX sing 28 n n PBB OAD 0YX sing 29 n n OAC H1 0YX sing 30 n n OAD H2 0YX sing 31 n n CAL H3 0YX sing 32 n n CAI H4 0YX sing 33 n n CAJ H5 0YX sing 34 n n CAT H6 0YX sing 35 n n CAT H7 0YX sing 36 n n CAK H8 0YX sing 37 n n CAG H9 0YX sing 38 n n CAF H10 0YX sing 39 n n CAH H11 0YX sing 40 n n CAS H12 0YX sing 41 n n CAS H13 0YX sing 42 n n CAR H14 0YX sing 43 n n CAR H15 0YX sing 44 n n CAQ H16 0YX sing 45 n n CAQ H17 0YX sing 46 n n CAP H18 0YX sing 47 n n CAP H19 0YX sing 48 n n CAO H20 0YX sing 49 n n CAO H21 0YX sing 50 n n CAN H22 0YX sing 51 n n CAN H23 0YX sing 52 n n CAM H24 0YX sing 53 n n CAM H25 0YX sing 54 n n CAA H26 0YX sing 55 n n CAA H27 0YX sing 56 n n CAA H28 0YX sing 57 n n # _atom_sites.entry_id 4H38 _atom_sites.fract_transf_matrix[1][1] 0.015806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0YX A 1 301 1 0YX DRG . D 3 HOH A 1 401 1 HOH HOH . D 3 HOH A 2 402 2 HOH HOH . D 3 HOH A 3 403 3 HOH HOH . D 3 HOH A 4 404 8 HOH HOH . D 3 HOH A 5 405 9 HOH HOH . D 3 HOH A 6 406 10 HOH HOH . D 3 HOH A 7 407 13 HOH HOH . D 3 HOH A 8 408 15 HOH HOH . D 3 HOH A 9 409 16 HOH HOH . D 3 HOH A 10 410 17 HOH HOH . D 3 HOH A 11 411 18 HOH HOH . D 3 HOH A 12 412 19 HOH HOH . D 3 HOH A 13 413 21 HOH HOH . D 3 HOH A 14 414 25 HOH HOH . D 3 HOH A 15 415 27 HOH HOH . D 3 HOH A 16 416 33 HOH HOH . D 3 HOH A 17 417 35 HOH HOH . D 3 HOH A 18 418 38 HOH HOH . D 3 HOH A 19 419 39 HOH HOH . D 3 HOH A 20 420 40 HOH HOH . D 3 HOH A 21 421 42 HOH HOH . D 3 HOH A 22 422 44 HOH HOH . D 3 HOH A 23 423 45 HOH HOH . D 3 HOH A 24 424 46 HOH HOH . D 3 HOH A 25 425 48 HOH HOH . D 3 HOH A 26 426 50 HOH HOH . D 3 HOH A 27 427 52 HOH HOH . D 3 HOH A 28 428 54 HOH HOH . D 3 HOH A 29 429 55 HOH HOH . D 3 HOH A 30 430 56 HOH HOH . D 3 HOH A 31 431 59 HOH HOH . D 3 HOH A 32 432 61 HOH HOH . D 3 HOH A 33 433 62 HOH HOH . D 3 HOH A 34 434 63 HOH HOH . D 3 HOH A 35 435 66 HOH HOH . D 3 HOH A 36 436 72 HOH HOH . D 3 HOH A 37 437 74 HOH HOH . D 3 HOH A 38 438 77 HOH HOH . D 3 HOH A 39 439 81 HOH HOH . D 3 HOH A 40 440 83 HOH HOH . D 3 HOH A 41 441 86 HOH HOH . D 3 HOH A 42 442 89 HOH HOH . E 3 HOH B 1 301 4 HOH HOH . E 3 HOH B 2 302 5 HOH HOH . E 3 HOH B 3 303 6 HOH HOH . E 3 HOH B 4 304 7 HOH HOH . E 3 HOH B 5 305 11 HOH HOH . E 3 HOH B 6 306 12 HOH HOH . E 3 HOH B 7 307 20 HOH HOH . E 3 HOH B 8 308 22 HOH HOH . E 3 HOH B 9 309 23 HOH HOH . E 3 HOH B 10 310 24 HOH HOH . E 3 HOH B 11 311 26 HOH HOH . E 3 HOH B 12 312 28 HOH HOH . E 3 HOH B 13 313 29 HOH HOH . E 3 HOH B 14 314 30 HOH HOH . E 3 HOH B 15 315 31 HOH HOH . E 3 HOH B 16 316 32 HOH HOH . E 3 HOH B 17 317 34 HOH HOH . E 3 HOH B 18 318 36 HOH HOH . E 3 HOH B 19 319 41 HOH HOH . E 3 HOH B 20 320 43 HOH HOH . E 3 HOH B 21 321 47 HOH HOH . E 3 HOH B 22 322 51 HOH HOH . E 3 HOH B 23 323 53 HOH HOH . E 3 HOH B 24 324 57 HOH HOH . E 3 HOH B 25 325 58 HOH HOH . E 3 HOH B 26 326 60 HOH HOH . E 3 HOH B 27 327 64 HOH HOH . E 3 HOH B 28 328 65 HOH HOH . E 3 HOH B 29 329 67 HOH HOH . E 3 HOH B 30 330 68 HOH HOH . E 3 HOH B 31 331 69 HOH HOH . E 3 HOH B 32 332 70 HOH HOH . E 3 HOH B 33 333 71 HOH HOH . E 3 HOH B 34 334 73 HOH HOH . E 3 HOH B 35 335 75 HOH HOH . E 3 HOH B 36 336 76 HOH HOH . E 3 HOH B 37 337 78 HOH HOH . E 3 HOH B 38 338 79 HOH HOH . E 3 HOH B 39 339 80 HOH HOH . E 3 HOH B 40 340 82 HOH HOH . E 3 HOH B 41 341 87 HOH HOH . E 3 HOH B 42 342 88 HOH HOH . E 3 HOH B 43 343 90 HOH HOH . E 3 HOH B 44 344 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC 0YX . . . C 2 44.713 27.976 63.804 1 90.4 ? OAC 0YX 301 A 1 HETATM 2 P PBB 0YX . . . C 2 45.4 26.467 63.726 1 111.01 ? PBB 0YX 301 A 1 HETATM 3 O OAD 0YX . . . C 2 44.892 25.904 65.099 1 102.47 ? OAD 0YX 301 A 1 HETATM 4 O OAB 0YX . . . C 2 46.872 26.48 63.798 1 108.63 ? OAB 0YX 301 A 1 HETATM 5 C CBA 0YX . . . C 2 44.463 25.414 62.387 1 90.23 ? CBA 0YX 301 A 1 HETATM 6 C CAL 0YX . . . C 2 44.339 24.131 62.812 1 87.64 ? CAL 0YX 301 A 1 HETATM 7 C CAW 0YX . . . C 2 43.679 23.155 62.126 1 88.93 ? CAW 0YX 301 A 1 HETATM 8 BR BRE 0YX . . . C 2 43.74 21.461 62.988 1 136.26 ? BRE 0YX 301 A 1 HETATM 9 C CAI 0YX . . . C 2 43.073 23.449 60.936 1 74.17 ? CAI 0YX 301 A 1 HETATM 10 C CAJ 0YX . . . C 2 43.159 24.745 60.463 1 64.27 ? CAJ 0YX 301 A 1 HETATM 11 C CAZ 0YX . . . C 2 43.847 25.73 61.139 1 71.36 ? CAZ 0YX 301 A 1 HETATM 12 O OAV 0YX . . . C 2 43.899 26.999 60.668 1 62.38 ? OAV 0YX 301 A 1 HETATM 13 C CAT 0YX . . . C 2 43.472 27.123 59.332 1 49.24 ? CAT 0YX 301 A 1 HETATM 14 C CAX 0YX . . . C 2 43.621 28.398 58.886 1 54.37 ? CAX 0YX 301 A 1 HETATM 15 C CAK 0YX . . . C 2 43.705 29.438 59.767 1 51.19 ? CAK 0YX 301 A 1 HETATM 16 C CAG 0YX . . . C 2 43.683 28.636 57.531 1 53.17 ? CAG 0YX 301 A 1 HETATM 17 C CAF 0YX . . . C 2 43.842 29.911 57.038 1 54.21 ? CAF 0YX 301 A 1 HETATM 18 C CAH 0YX . . . C 2 43.915 30.976 57.927 1 55.93 ? CAH 0YX 301 A 1 HETATM 19 C CAY 0YX . . . C 2 43.845 30.722 59.283 1 56.68 ? CAY 0YX 301 A 1 HETATM 20 O OAU 0YX . . . C 2 43.932 31.751 60.106 1 51.78 ? OAU 0YX 301 A 1 HETATM 21 C CAS 0YX . . . C 2 43.474 32.787 59.277 1 55.87 ? CAS 0YX 301 A 1 HETATM 22 C CAR 0YX . . . C 2 44.595 33.74 58.938 1 59.14 ? CAR 0YX 301 A 1 HETATM 23 C CAQ 0YX . . . C 2 45.049 34.506 60.164 1 50.59 ? CAQ 0YX 301 A 1 HETATM 24 C CAP 0YX . . . C 2 44.894 36.006 59.898 1 47.88 ? CAP 0YX 301 A 1 HETATM 25 C CAO 0YX . . . C 2 45.626 36.877 60.918 1 46.24 ? CAO 0YX 301 A 1 HETATM 26 C CAN 0YX . . . C 2 44.844 38.163 61.015 1 45.57 ? CAN 0YX 301 A 1 HETATM 27 C CAM 0YX . . . C 2 45.6 39.435 60.686 1 44.49 ? CAM 0YX 301 A 1 HETATM 28 C CAA 0YX . . . C 2 45.561 40.347 61.903 1 40.92 ? CAA 0YX 301 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #