data_4H3K # _model_server_result.job_id 0J0u1F0hUsJZSAeWS1WfVg _model_server_result.datetime_utc '2024-11-04 20:34:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 4H3K # _exptl.entry_id 4H3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.86 _cell.angle_gamma 90 _cell.entry_id 4H3K _cell.length_a 67.583 _cell.length_b 97.364 _cell.length_c 105.278 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA trimeric 3 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H 1 1 C,D,E,I,J 2 1 B,F,H 3 1 A,G 3 2 C,I 4 3 D,E,J 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,y-1/2,-z -1 0 0 0 1 0 0 0 -1 -67.583 -48.682 0 3 'crystal symmetry operation' 2_556 -x,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 -14.397083 48.682 104.288932 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C SEP 3 F SEP 2 1_555 E N PRO 4 F PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale2 E C THR 5 F THR 4 1_555 E N SEP 6 F SEP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 E C SEP 6 F SEP 5 1_555 E N PRO 7 F PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale4 E C PRO 7 F PRO 6 1_555 E N SEP 8 F SEP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 E C SEP 8 F SEP 7 1_555 E N TYR 9 F TYR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 4H3K _atom_sites.fract_transf_matrix[1][1] 0.014797 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002043 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 PO4 B 1 201 1 PO4 PO4 . G 5 HOH A 1 401 4 HOH HOH . G 5 HOH A 2 402 7 HOH HOH . G 5 HOH A 3 403 11 HOH HOH . G 5 HOH A 4 404 15 HOH HOH . G 5 HOH A 5 405 23 HOH HOH . G 5 HOH A 6 406 26 HOH HOH . G 5 HOH A 7 407 33 HOH HOH . G 5 HOH A 8 408 42 HOH HOH . G 5 HOH A 9 409 45 HOH HOH . G 5 HOH A 10 410 48 HOH HOH . G 5 HOH A 11 411 62 HOH HOH . G 5 HOH A 12 412 66 HOH HOH . G 5 HOH A 13 413 70 HOH HOH . G 5 HOH A 14 414 76 HOH HOH . G 5 HOH A 15 415 77 HOH HOH . G 5 HOH A 16 416 80 HOH HOH . G 5 HOH A 17 417 81 HOH HOH . G 5 HOH A 18 418 85 HOH HOH . G 5 HOH A 19 419 87 HOH HOH . G 5 HOH A 20 420 88 HOH HOH . G 5 HOH A 21 421 89 HOH HOH . G 5 HOH A 22 422 91 HOH HOH . G 5 HOH A 23 423 93 HOH HOH . G 5 HOH A 24 424 94 HOH HOH . G 5 HOH A 25 425 98 HOH HOH . G 5 HOH A 26 426 102 HOH HOH . G 5 HOH A 27 427 106 HOH HOH . G 5 HOH A 28 428 110 HOH HOH . G 5 HOH A 29 429 111 HOH HOH . H 5 HOH B 1 301 3 HOH HOH . H 5 HOH B 2 302 5 HOH HOH . H 5 HOH B 3 303 13 HOH HOH . H 5 HOH B 4 304 18 HOH HOH . H 5 HOH B 5 305 19 HOH HOH . H 5 HOH B 6 306 20 HOH HOH . H 5 HOH B 7 307 25 HOH HOH . H 5 HOH B 8 308 27 HOH HOH . H 5 HOH B 9 309 29 HOH HOH . H 5 HOH B 10 310 30 HOH HOH . H 5 HOH B 11 311 31 HOH HOH . H 5 HOH B 12 312 35 HOH HOH . H 5 HOH B 13 313 36 HOH HOH . H 5 HOH B 14 314 44 HOH HOH . H 5 HOH B 15 315 51 HOH HOH . H 5 HOH B 16 316 52 HOH HOH . H 5 HOH B 17 317 54 HOH HOH . H 5 HOH B 18 318 56 HOH HOH . H 5 HOH B 19 319 58 HOH HOH . H 5 HOH B 20 320 64 HOH HOH . H 5 HOH B 21 321 67 HOH HOH . H 5 HOH B 22 322 72 HOH HOH . H 5 HOH B 23 323 84 HOH HOH . H 5 HOH B 24 324 86 HOH HOH . H 5 HOH B 25 325 90 HOH HOH . H 5 HOH B 26 326 97 HOH HOH . H 5 HOH B 27 327 103 HOH HOH . H 5 HOH B 28 328 108 HOH HOH . H 5 HOH B 29 329 109 HOH HOH . I 5 HOH D 1 401 1 HOH HOH . I 5 HOH D 2 402 2 HOH HOH . I 5 HOH D 3 403 8 HOH HOH . I 5 HOH D 4 404 12 HOH HOH . I 5 HOH D 5 405 14 HOH HOH . I 5 HOH D 6 406 21 HOH HOH . I 5 HOH D 7 407 34 HOH HOH . I 5 HOH D 8 408 37 HOH HOH . I 5 HOH D 9 409 38 HOH HOH . I 5 HOH D 10 410 39 HOH HOH . I 5 HOH D 11 411 43 HOH HOH . I 5 HOH D 12 412 47 HOH HOH . I 5 HOH D 13 413 49 HOH HOH . I 5 HOH D 14 414 60 HOH HOH . I 5 HOH D 15 415 61 HOH HOH . I 5 HOH D 16 416 63 HOH HOH . I 5 HOH D 17 417 68 HOH HOH . I 5 HOH D 18 418 74 HOH HOH . I 5 HOH D 19 419 78 HOH HOH . I 5 HOH D 20 420 79 HOH HOH . I 5 HOH D 21 421 82 HOH HOH . I 5 HOH D 22 422 83 HOH HOH . I 5 HOH D 23 423 92 HOH HOH . I 5 HOH D 24 424 96 HOH HOH . I 5 HOH D 25 425 99 HOH HOH . I 5 HOH D 26 426 101 HOH HOH . I 5 HOH D 27 427 105 HOH HOH . I 5 HOH D 28 428 107 HOH HOH . I 5 HOH D 29 429 113 HOH HOH . J 5 HOH E 1 201 6 HOH HOH . J 5 HOH E 2 202 9 HOH HOH . J 5 HOH E 3 203 10 HOH HOH . J 5 HOH E 4 204 16 HOH HOH . J 5 HOH E 5 205 17 HOH HOH . J 5 HOH E 6 206 22 HOH HOH . J 5 HOH E 7 207 24 HOH HOH . J 5 HOH E 8 208 28 HOH HOH . J 5 HOH E 9 209 32 HOH HOH . J 5 HOH E 10 210 40 HOH HOH . J 5 HOH E 11 211 41 HOH HOH . J 5 HOH E 12 212 46 HOH HOH . J 5 HOH E 13 213 50 HOH HOH . J 5 HOH E 14 214 53 HOH HOH . J 5 HOH E 15 215 55 HOH HOH . J 5 HOH E 16 216 57 HOH HOH . J 5 HOH E 17 217 59 HOH HOH . J 5 HOH E 18 218 65 HOH HOH . J 5 HOH E 19 219 69 HOH HOH . J 5 HOH E 20 220 71 HOH HOH . J 5 HOH E 21 221 73 HOH HOH . J 5 HOH E 22 222 75 HOH HOH . J 5 HOH E 23 223 95 HOH HOH . J 5 HOH E 24 224 100 HOH HOH . J 5 HOH E 25 225 104 HOH HOH . J 5 HOH E 26 226 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 4 -22.221 -22.28 -14.91 1 30.93 ? P PO4 201 B 1 HETATM 2 O O1 PO4 . . . F 4 -23.525 -21.732 -15.402 1 33.14 ? O1 PO4 201 B 1 HETATM 3 O O2 PO4 . . . F 4 -21.932 -23.654 -15.534 1 34.16 ? O2 PO4 201 B 1 HETATM 4 O O3 PO4 . . . F 4 -22.23 -22.468 -13.405 1 32.2 ? O3 PO4 201 B 1 HETATM 5 O O4 PO4 . . . F 4 -21.059 -21.38 -15.219 1 30.75 ? O4 PO4 201 B 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #