data_4H3P
#
_model_server_result.job_id            jZIyly80idfPDfadZ0ik7Q 
_model_server_result.datetime_utc      '2024-11-04 20:11:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4h3p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    4H3P 
#
_exptl.entry_id    4H3P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         100.93 
_cell.angle_beta          98.96 
_cell.angle_gamma         90.01 
_cell.entry_id            4H3P 
_cell.length_a            41.48 
_cell.length_b            58.77 
_cell.length_c            79.18 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4H3P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G 1 1 
B,D,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     4H3P 
_atom_sites.fract_transf_matrix[1][1]    0.024108 
_atom_sites.fract_transf_matrix[1][2]    0.000006 
_atom_sites.fract_transf_matrix[1][3]    0.003874 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017015 
_atom_sites.fract_transf_matrix[2][3]    0.003327 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013028 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ANP A 1 401 1 ANP ANP . 
F 3 ANP D 1 401 1 ANP ANP . 
G 4 HOH A 1 501 2 HOH HOH . 
G 4 HOH A 2 502 3 HOH HOH . 
G 4 HOH A 3 503 6 HOH HOH . 
G 4 HOH A 4 504 9 HOH HOH . 
G 4 HOH A 5 505 13 HOH HOH . 
G 4 HOH A 6 506 14 HOH HOH . 
G 4 HOH A 7 507 15 HOH HOH . 
G 4 HOH A 8 508 19 HOH HOH . 
G 4 HOH A 9 509 21 HOH HOH . 
G 4 HOH A 10 510 22 HOH HOH . 
G 4 HOH A 11 511 23 HOH HOH . 
G 4 HOH A 12 512 26 HOH HOH . 
G 4 HOH A 13 513 32 HOH HOH . 
G 4 HOH A 14 514 35 HOH HOH . 
G 4 HOH A 15 515 36 HOH HOH . 
G 4 HOH A 16 516 37 HOH HOH . 
G 4 HOH A 17 517 38 HOH HOH . 
G 4 HOH A 18 518 39 HOH HOH . 
G 4 HOH A 19 519 41 HOH HOH . 
G 4 HOH A 20 520 42 HOH HOH . 
G 4 HOH A 21 521 48 HOH HOH . 
G 4 HOH A 22 522 52 HOH HOH . 
G 4 HOH A 23 523 54 HOH HOH . 
G 4 HOH A 24 524 55 HOH HOH . 
G 4 HOH A 25 525 56 HOH HOH . 
G 4 HOH A 26 526 57 HOH HOH . 
G 4 HOH A 27 527 58 HOH HOH . 
G 4 HOH A 28 528 62 HOH HOH . 
G 4 HOH A 29 529 64 HOH HOH . 
G 4 HOH A 30 530 70 HOH HOH . 
G 4 HOH A 31 531 71 HOH HOH . 
G 4 HOH A 32 532 73 HOH HOH . 
G 4 HOH A 33 533 75 HOH HOH . 
G 4 HOH A 34 534 77 HOH HOH . 
G 4 HOH A 35 535 82 HOH HOH . 
G 4 HOH A 36 536 85 HOH HOH . 
G 4 HOH A 37 537 86 HOH HOH . 
G 4 HOH A 38 538 90 HOH HOH . 
G 4 HOH A 39 539 94 HOH HOH . 
G 4 HOH A 40 540 96 HOH HOH . 
G 4 HOH A 41 541 99 HOH HOH . 
G 4 HOH A 42 542 105 HOH HOH . 
G 4 HOH A 43 543 107 HOH HOH . 
G 4 HOH A 44 544 110 HOH HOH . 
G 4 HOH A 45 545 111 HOH HOH . 
G 4 HOH A 46 546 112 HOH HOH . 
G 4 HOH A 47 547 115 HOH HOH . 
G 4 HOH A 48 548 116 HOH HOH . 
G 4 HOH A 49 549 117 HOH HOH . 
G 4 HOH A 50 550 118 HOH HOH . 
G 4 HOH A 51 551 119 HOH HOH . 
G 4 HOH A 52 552 120 HOH HOH . 
G 4 HOH A 53 553 121 HOH HOH . 
G 4 HOH A 54 554 123 HOH HOH . 
G 4 HOH A 55 555 126 HOH HOH . 
G 4 HOH A 56 556 128 HOH HOH . 
G 4 HOH A 57 557 132 HOH HOH . 
G 4 HOH A 58 558 133 HOH HOH . 
G 4 HOH A 59 559 134 HOH HOH . 
G 4 HOH A 60 560 135 HOH HOH . 
G 4 HOH A 61 561 136 HOH HOH . 
G 4 HOH A 62 562 138 HOH HOH . 
G 4 HOH A 63 563 140 HOH HOH . 
G 4 HOH A 64 564 141 HOH HOH . 
G 4 HOH A 65 565 142 HOH HOH . 
G 4 HOH A 66 566 147 HOH HOH . 
G 4 HOH A 67 567 148 HOH HOH . 
G 4 HOH A 68 568 150 HOH HOH . 
G 4 HOH A 69 569 151 HOH HOH . 
G 4 HOH A 70 570 152 HOH HOH . 
G 4 HOH A 71 571 155 HOH HOH . 
G 4 HOH A 72 572 156 HOH HOH . 
G 4 HOH A 73 573 158 HOH HOH . 
G 4 HOH A 74 574 160 HOH HOH . 
G 4 HOH A 75 575 163 HOH HOH . 
G 4 HOH A 76 576 164 HOH HOH . 
G 4 HOH A 77 577 165 HOH HOH . 
G 4 HOH A 78 578 167 HOH HOH . 
G 4 HOH A 79 579 168 HOH HOH . 
G 4 HOH A 80 580 170 HOH HOH . 
G 4 HOH A 81 581 171 HOH HOH . 
G 4 HOH A 82 582 172 HOH HOH . 
G 4 HOH A 83 583 174 HOH HOH . 
G 4 HOH A 84 584 175 HOH HOH . 
G 4 HOH A 85 585 176 HOH HOH . 
H 4 HOH D 1 501 1 HOH HOH . 
H 4 HOH D 2 502 4 HOH HOH . 
H 4 HOH D 3 503 5 HOH HOH . 
H 4 HOH D 4 504 7 HOH HOH . 
H 4 HOH D 5 505 8 HOH HOH . 
H 4 HOH D 6 506 10 HOH HOH . 
H 4 HOH D 7 507 11 HOH HOH . 
H 4 HOH D 8 508 12 HOH HOH . 
H 4 HOH D 9 509 16 HOH HOH . 
H 4 HOH D 10 510 17 HOH HOH . 
H 4 HOH D 11 511 18 HOH HOH . 
H 4 HOH D 12 512 20 HOH HOH . 
H 4 HOH D 13 513 24 HOH HOH . 
H 4 HOH D 14 514 25 HOH HOH . 
H 4 HOH D 15 515 27 HOH HOH . 
H 4 HOH D 16 516 28 HOH HOH . 
H 4 HOH D 17 517 29 HOH HOH . 
H 4 HOH D 18 518 30 HOH HOH . 
H 4 HOH D 19 519 31 HOH HOH . 
H 4 HOH D 20 520 33 HOH HOH . 
H 4 HOH D 21 521 34 HOH HOH . 
H 4 HOH D 22 522 40 HOH HOH . 
H 4 HOH D 23 523 43 HOH HOH . 
H 4 HOH D 24 524 44 HOH HOH . 
H 4 HOH D 25 525 45 HOH HOH . 
H 4 HOH D 26 526 46 HOH HOH . 
H 4 HOH D 27 527 47 HOH HOH . 
H 4 HOH D 28 528 49 HOH HOH . 
H 4 HOH D 29 529 50 HOH HOH . 
H 4 HOH D 30 530 51 HOH HOH . 
H 4 HOH D 31 531 53 HOH HOH . 
H 4 HOH D 32 532 59 HOH HOH . 
H 4 HOH D 33 533 60 HOH HOH . 
H 4 HOH D 34 534 61 HOH HOH . 
H 4 HOH D 35 535 63 HOH HOH . 
H 4 HOH D 36 536 65 HOH HOH . 
H 4 HOH D 37 537 66 HOH HOH . 
H 4 HOH D 38 538 67 HOH HOH . 
H 4 HOH D 39 539 68 HOH HOH . 
H 4 HOH D 40 540 69 HOH HOH . 
H 4 HOH D 41 541 72 HOH HOH . 
H 4 HOH D 42 542 74 HOH HOH . 
H 4 HOH D 43 543 76 HOH HOH . 
H 4 HOH D 44 544 78 HOH HOH . 
H 4 HOH D 45 545 79 HOH HOH . 
H 4 HOH D 46 546 80 HOH HOH . 
H 4 HOH D 47 547 81 HOH HOH . 
H 4 HOH D 48 548 83 HOH HOH . 
H 4 HOH D 49 549 84 HOH HOH . 
H 4 HOH D 50 550 87 HOH HOH . 
H 4 HOH D 51 551 88 HOH HOH . 
H 4 HOH D 52 552 89 HOH HOH . 
H 4 HOH D 53 553 91 HOH HOH . 
H 4 HOH D 54 554 92 HOH HOH . 
H 4 HOH D 55 555 93 HOH HOH . 
H 4 HOH D 56 556 95 HOH HOH . 
H 4 HOH D 57 557 97 HOH HOH . 
H 4 HOH D 58 558 98 HOH HOH . 
H 4 HOH D 59 559 100 HOH HOH . 
H 4 HOH D 60 560 101 HOH HOH . 
H 4 HOH D 61 561 102 HOH HOH . 
H 4 HOH D 62 562 103 HOH HOH . 
H 4 HOH D 63 563 104 HOH HOH . 
H 4 HOH D 64 564 106 HOH HOH . 
H 4 HOH D 65 565 108 HOH HOH . 
H 4 HOH D 66 566 109 HOH HOH . 
H 4 HOH D 67 567 113 HOH HOH . 
H 4 HOH D 68 568 114 HOH HOH . 
H 4 HOH D 69 569 122 HOH HOH . 
H 4 HOH D 70 570 124 HOH HOH . 
H 4 HOH D 71 571 125 HOH HOH . 
H 4 HOH D 72 572 127 HOH HOH . 
H 4 HOH D 73 573 129 HOH HOH . 
H 4 HOH D 74 574 130 HOH HOH . 
H 4 HOH D 75 575 131 HOH HOH . 
H 4 HOH D 76 576 137 HOH HOH . 
H 4 HOH D 77 577 139 HOH HOH . 
H 4 HOH D 78 578 143 HOH HOH . 
H 4 HOH D 79 579 144 HOH HOH . 
H 4 HOH D 80 580 145 HOH HOH . 
H 4 HOH D 81 581 146 HOH HOH . 
H 4 HOH D 82 582 149 HOH HOH . 
H 4 HOH D 83 583 153 HOH HOH . 
H 4 HOH D 84 584 154 HOH HOH . 
H 4 HOH D 85 585 157 HOH HOH . 
H 4 HOH D 86 586 159 HOH HOH . 
H 4 HOH D 87 587 161 HOH HOH . 
H 4 HOH D 88 588 162 HOH HOH . 
H 4 HOH D 89 589 166 HOH HOH . 
H 4 HOH D 90 590 169 HOH HOH . 
H 4 HOH D 91 591 173 HOH HOH . 
H 4 HOH D 92 592 177 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . E 3 -2.367 3.843 -9.273 1 137.05 ? PG ANP 401 A 1 
HETATM 2 O O1G ANP . . . E 3 -1.122 2.981 -9.349 1 135.63 ? O1G ANP 401 A 1 
HETATM 3 O O2G ANP . . . E 3 -3.444 3.438 -10.347 1 49.76 ? O2G ANP 401 A 1 
HETATM 4 O O3G ANP . . . E 3 -1.993 5.397 -9.487 1 62.41 ? O3G ANP 401 A 1 
HETATM 5 P PB ANP . . . E 3 -1.899 3.681 -6.522 1 124.94 ? PB ANP 401 A 1 
HETATM 6 O O1B ANP . . . E 3 -2.957 3.544 -5.329 1 202.83 ? O1B ANP 401 A 1 
HETATM 7 O O2B ANP . . . E 3 -0.782 4.803 -6.467 1 138.12 ? O2B ANP 401 A 1 
HETATM 8 N N3B ANP . . . E 3 -3.101 3.696 -7.797 1 157.98 ? N3B ANP 401 A 1 
HETATM 9 P PA ANP . . . E 3 -2.39 1.035 -5.961 1 212.41 ? PA ANP 401 A 1 
HETATM 10 O O1A ANP . . . E 3 -3.863 1.115 -6.441 1 140.35 ? O1A ANP 401 A 1 
HETATM 11 O O2A ANP . . . E 3 -2.31 1.169 -4.466 1 211.24 ? O2A ANP 401 A 1 
HETATM 12 O O3A ANP . . . E 3 -1.48 2.155 -6.581 1 195.35 ? O3A ANP 401 A 1 
HETATM 13 O O5' ANP . . . E 3 -1.741 -0.34 -6.39 1 86.65 ? O5' ANP 401 A 1 
HETATM 14 C C5' ANP . . . E 3 -0.586 -0.363 -7.225 1 85.2 ? C5' ANP 401 A 1 
HETATM 15 C C4' ANP . . . E 3 0.009 -1.66 -7.587 1 80.76 ? C4' ANP 401 A 1 
HETATM 16 O O4' ANP . . . E 3 -0.799 -2.685 -7.139 1 79.32 ? O4' ANP 401 A 1 
HETATM 17 C C3' ANP . . . E 3 0.098 -1.807 -9.061 1 77.31 ? C3' ANP 401 A 1 
HETATM 18 O O3' ANP . . . E 3 1.283 -2.457 -9.375 1 67.74 ? O3' ANP 401 A 1 
HETATM 19 C C2' ANP . . . E 3 -1.048 -2.565 -9.454 1 77.32 ? C2' ANP 401 A 1 
HETATM 20 O O2' ANP . . . E 3 -0.766 -3.375 -10.538 1 78.99 ? O2' ANP 401 A 1 
HETATM 21 C C1' ANP . . . E 3 -1.299 -3.395 -8.274 1 74.46 ? C1' ANP 401 A 1 
HETATM 22 N N9 ANP . . . E 3 -2.639 -3.962 -7.966 1 60 ? N9 ANP 401 A 1 
HETATM 23 C C8 ANP . . . E 3 -3.675 -3.33 -7.371 1 56.84 ? C8 ANP 401 A 1 
HETATM 24 N N7 ANP . . . E 3 -4.691 -4.19 -7.223 1 52.58 ? N7 ANP 401 A 1 
HETATM 25 C C5 ANP . . . E 3 -4.3 -5.395 -7.719 1 50.84 ? C5 ANP 401 A 1 
HETATM 26 C C6 ANP . . . E 3 -4.912 -6.657 -7.842 1 37.64 ? C6 ANP 401 A 1 
HETATM 27 N N6 ANP . . . E 3 -6.263 -6.821 -7.372 1 22.18 ? N6 ANP 401 A 1 
HETATM 28 N N1 ANP . . . E 3 -4.243 -7.689 -8.396 1 35.16 ? N1 ANP 401 A 1 
HETATM 29 C C2 ANP . . . E 3 -2.992 -7.502 -8.828 1 36.23 ? C2 ANP 401 A 1 
HETATM 30 N N3 ANP . . . E 3 -2.364 -6.311 -8.726 1 43.18 ? N3 ANP 401 A 1 
HETATM 31 C C4 ANP . . . E 3 -2.991 -5.25 -8.183 1 45.88 ? C4 ANP 401 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#