data_4H3P # _model_server_result.job_id xBWdEVxW5s4nGt6d-hxEDA _model_server_result.datetime_utc '2024-12-22 02:53:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h3p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 4H3P # _exptl.entry_id 4H3P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 100.93 _cell.angle_beta 98.96 _cell.angle_gamma 90.01 _cell.entry_id 4H3P _cell.length_a 41.48 _cell.length_b 58.77 _cell.length_c 79.18 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H3P _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G 1 1 B,D,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4H3P _atom_sites.fract_transf_matrix[1][1] 0.024108 _atom_sites.fract_transf_matrix[1][2] 0.000006 _atom_sites.fract_transf_matrix[1][3] 0.003874 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017015 _atom_sites.fract_transf_matrix[2][3] 0.003327 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ANP A 1 401 1 ANP ANP . F 3 ANP D 1 401 1 ANP ANP . G 4 HOH A 1 501 2 HOH HOH . G 4 HOH A 2 502 3 HOH HOH . G 4 HOH A 3 503 6 HOH HOH . G 4 HOH A 4 504 9 HOH HOH . G 4 HOH A 5 505 13 HOH HOH . G 4 HOH A 6 506 14 HOH HOH . G 4 HOH A 7 507 15 HOH HOH . G 4 HOH A 8 508 19 HOH HOH . G 4 HOH A 9 509 21 HOH HOH . G 4 HOH A 10 510 22 HOH HOH . G 4 HOH A 11 511 23 HOH HOH . G 4 HOH A 12 512 26 HOH HOH . G 4 HOH A 13 513 32 HOH HOH . G 4 HOH A 14 514 35 HOH HOH . G 4 HOH A 15 515 36 HOH HOH . G 4 HOH A 16 516 37 HOH HOH . G 4 HOH A 17 517 38 HOH HOH . G 4 HOH A 18 518 39 HOH HOH . G 4 HOH A 19 519 41 HOH HOH . G 4 HOH A 20 520 42 HOH HOH . G 4 HOH A 21 521 48 HOH HOH . G 4 HOH A 22 522 52 HOH HOH . G 4 HOH A 23 523 54 HOH HOH . G 4 HOH A 24 524 55 HOH HOH . G 4 HOH A 25 525 56 HOH HOH . G 4 HOH A 26 526 57 HOH HOH . G 4 HOH A 27 527 58 HOH HOH . G 4 HOH A 28 528 62 HOH HOH . G 4 HOH A 29 529 64 HOH HOH . G 4 HOH A 30 530 70 HOH HOH . G 4 HOH A 31 531 71 HOH HOH . G 4 HOH A 32 532 73 HOH HOH . G 4 HOH A 33 533 75 HOH HOH . G 4 HOH A 34 534 77 HOH HOH . G 4 HOH A 35 535 82 HOH HOH . G 4 HOH A 36 536 85 HOH HOH . G 4 HOH A 37 537 86 HOH HOH . G 4 HOH A 38 538 90 HOH HOH . G 4 HOH A 39 539 94 HOH HOH . G 4 HOH A 40 540 96 HOH HOH . G 4 HOH A 41 541 99 HOH HOH . G 4 HOH A 42 542 105 HOH HOH . G 4 HOH A 43 543 107 HOH HOH . G 4 HOH A 44 544 110 HOH HOH . G 4 HOH A 45 545 111 HOH HOH . G 4 HOH A 46 546 112 HOH HOH . G 4 HOH A 47 547 115 HOH HOH . G 4 HOH A 48 548 116 HOH HOH . G 4 HOH A 49 549 117 HOH HOH . G 4 HOH A 50 550 118 HOH HOH . G 4 HOH A 51 551 119 HOH HOH . G 4 HOH A 52 552 120 HOH HOH . G 4 HOH A 53 553 121 HOH HOH . G 4 HOH A 54 554 123 HOH HOH . G 4 HOH A 55 555 126 HOH HOH . G 4 HOH A 56 556 128 HOH HOH . G 4 HOH A 57 557 132 HOH HOH . G 4 HOH A 58 558 133 HOH HOH . G 4 HOH A 59 559 134 HOH HOH . G 4 HOH A 60 560 135 HOH HOH . G 4 HOH A 61 561 136 HOH HOH . G 4 HOH A 62 562 138 HOH HOH . G 4 HOH A 63 563 140 HOH HOH . G 4 HOH A 64 564 141 HOH HOH . G 4 HOH A 65 565 142 HOH HOH . G 4 HOH A 66 566 147 HOH HOH . G 4 HOH A 67 567 148 HOH HOH . G 4 HOH A 68 568 150 HOH HOH . G 4 HOH A 69 569 151 HOH HOH . G 4 HOH A 70 570 152 HOH HOH . G 4 HOH A 71 571 155 HOH HOH . G 4 HOH A 72 572 156 HOH HOH . G 4 HOH A 73 573 158 HOH HOH . G 4 HOH A 74 574 160 HOH HOH . G 4 HOH A 75 575 163 HOH HOH . G 4 HOH A 76 576 164 HOH HOH . G 4 HOH A 77 577 165 HOH HOH . G 4 HOH A 78 578 167 HOH HOH . G 4 HOH A 79 579 168 HOH HOH . G 4 HOH A 80 580 170 HOH HOH . G 4 HOH A 81 581 171 HOH HOH . G 4 HOH A 82 582 172 HOH HOH . G 4 HOH A 83 583 174 HOH HOH . G 4 HOH A 84 584 175 HOH HOH . G 4 HOH A 85 585 176 HOH HOH . H 4 HOH D 1 501 1 HOH HOH . H 4 HOH D 2 502 4 HOH HOH . H 4 HOH D 3 503 5 HOH HOH . H 4 HOH D 4 504 7 HOH HOH . H 4 HOH D 5 505 8 HOH HOH . H 4 HOH D 6 506 10 HOH HOH . H 4 HOH D 7 507 11 HOH HOH . H 4 HOH D 8 508 12 HOH HOH . H 4 HOH D 9 509 16 HOH HOH . H 4 HOH D 10 510 17 HOH HOH . H 4 HOH D 11 511 18 HOH HOH . H 4 HOH D 12 512 20 HOH HOH . H 4 HOH D 13 513 24 HOH HOH . H 4 HOH D 14 514 25 HOH HOH . H 4 HOH D 15 515 27 HOH HOH . H 4 HOH D 16 516 28 HOH HOH . H 4 HOH D 17 517 29 HOH HOH . H 4 HOH D 18 518 30 HOH HOH . H 4 HOH D 19 519 31 HOH HOH . H 4 HOH D 20 520 33 HOH HOH . H 4 HOH D 21 521 34 HOH HOH . H 4 HOH D 22 522 40 HOH HOH . H 4 HOH D 23 523 43 HOH HOH . H 4 HOH D 24 524 44 HOH HOH . H 4 HOH D 25 525 45 HOH HOH . H 4 HOH D 26 526 46 HOH HOH . H 4 HOH D 27 527 47 HOH HOH . H 4 HOH D 28 528 49 HOH HOH . H 4 HOH D 29 529 50 HOH HOH . H 4 HOH D 30 530 51 HOH HOH . H 4 HOH D 31 531 53 HOH HOH . H 4 HOH D 32 532 59 HOH HOH . H 4 HOH D 33 533 60 HOH HOH . H 4 HOH D 34 534 61 HOH HOH . H 4 HOH D 35 535 63 HOH HOH . H 4 HOH D 36 536 65 HOH HOH . H 4 HOH D 37 537 66 HOH HOH . H 4 HOH D 38 538 67 HOH HOH . H 4 HOH D 39 539 68 HOH HOH . H 4 HOH D 40 540 69 HOH HOH . H 4 HOH D 41 541 72 HOH HOH . H 4 HOH D 42 542 74 HOH HOH . H 4 HOH D 43 543 76 HOH HOH . H 4 HOH D 44 544 78 HOH HOH . H 4 HOH D 45 545 79 HOH HOH . H 4 HOH D 46 546 80 HOH HOH . H 4 HOH D 47 547 81 HOH HOH . H 4 HOH D 48 548 83 HOH HOH . H 4 HOH D 49 549 84 HOH HOH . H 4 HOH D 50 550 87 HOH HOH . H 4 HOH D 51 551 88 HOH HOH . H 4 HOH D 52 552 89 HOH HOH . H 4 HOH D 53 553 91 HOH HOH . H 4 HOH D 54 554 92 HOH HOH . H 4 HOH D 55 555 93 HOH HOH . H 4 HOH D 56 556 95 HOH HOH . H 4 HOH D 57 557 97 HOH HOH . H 4 HOH D 58 558 98 HOH HOH . H 4 HOH D 59 559 100 HOH HOH . H 4 HOH D 60 560 101 HOH HOH . H 4 HOH D 61 561 102 HOH HOH . H 4 HOH D 62 562 103 HOH HOH . H 4 HOH D 63 563 104 HOH HOH . H 4 HOH D 64 564 106 HOH HOH . H 4 HOH D 65 565 108 HOH HOH . H 4 HOH D 66 566 109 HOH HOH . H 4 HOH D 67 567 113 HOH HOH . H 4 HOH D 68 568 114 HOH HOH . H 4 HOH D 69 569 122 HOH HOH . H 4 HOH D 70 570 124 HOH HOH . H 4 HOH D 71 571 125 HOH HOH . H 4 HOH D 72 572 127 HOH HOH . H 4 HOH D 73 573 129 HOH HOH . H 4 HOH D 74 574 130 HOH HOH . H 4 HOH D 75 575 131 HOH HOH . H 4 HOH D 76 576 137 HOH HOH . H 4 HOH D 77 577 139 HOH HOH . H 4 HOH D 78 578 143 HOH HOH . H 4 HOH D 79 579 144 HOH HOH . H 4 HOH D 80 580 145 HOH HOH . H 4 HOH D 81 581 146 HOH HOH . H 4 HOH D 82 582 149 HOH HOH . H 4 HOH D 83 583 153 HOH HOH . H 4 HOH D 84 584 154 HOH HOH . H 4 HOH D 85 585 157 HOH HOH . H 4 HOH D 86 586 159 HOH HOH . H 4 HOH D 87 587 161 HOH HOH . H 4 HOH D 88 588 162 HOH HOH . H 4 HOH D 89 589 166 HOH HOH . H 4 HOH D 90 590 169 HOH HOH . H 4 HOH D 91 591 173 HOH HOH . H 4 HOH D 92 592 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 3 -23.048 26.362 10.416 1 173.54 ? PG ANP 401 D 1 HETATM 2 O O1G ANP . . . F 3 -21.718 27.06 10.208 1 172.17 ? O1G ANP 401 D 1 HETATM 3 O O2G ANP . . . F 3 -23.786 26.908 11.692 1 84.61 ? O2G ANP 401 D 1 HETATM 4 O O3G ANP . . . F 3 -22.845 24.768 10.589 1 83.3 ? O3G ANP 401 D 1 HETATM 5 P PB ANP . . . F 3 -23.18 26.19 7.66 1 249.21 ? PB ANP 401 D 1 HETATM 6 O O1B ANP . . . F 3 -24.402 26.455 6.661 1 113.72 ? O1B ANP 401 D 1 HETATM 7 O O2B ANP . . . F 3 -22.379 24.828 7.59 1 70.12 ? O2B ANP 401 D 1 HETATM 8 N N3B ANP . . . F 3 -24.058 26.594 9.124 1 78.94 ? N3B ANP 401 D 1 HETATM 9 P PA ANP . . . F 3 -23.05 28.765 6.728 1 155.01 ? PA ANP 401 D 1 HETATM 10 O O1A ANP . . . F 3 -24.594 28.709 6.848 1 156.13 ? O1A ANP 401 D 1 HETATM 11 O O2A ANP . . . F 3 -22.619 28.748 5.287 1 152.73 ? O2A ANP 401 D 1 HETATM 12 O O3A ANP . . . F 3 -22.381 27.542 7.439 1 163.5 ? O3A ANP 401 D 1 HETATM 13 O O5' ANP . . . F 3 -22.478 30.075 7.405 1 85.1 ? O5' ANP 401 D 1 HETATM 14 C C5' ANP . . . F 3 -21.259 30.08 8.143 1 82.05 ? C5' ANP 401 D 1 HETATM 15 C C4' ANP . . . F 3 -20.636 31.37 8.492 1 79.78 ? C4' ANP 401 D 1 HETATM 16 O O4' ANP . . . F 3 -21.425 32.434 8.087 1 79.49 ? O4' ANP 401 D 1 HETATM 17 C C3' ANP . . . F 3 -20.496 31.465 9.963 1 80.18 ? C3' ANP 401 D 1 HETATM 18 O O3' ANP . . . F 3 -19.202 31.851 10.289 1 77.87 ? O3' ANP 401 D 1 HETATM 19 C C2' ANP . . . F 3 -21.49 32.387 10.42 1 77.5 ? C2' ANP 401 D 1 HETATM 20 O O2' ANP . . . F 3 -20.995 33.188 11.437 1 73.8 ? O2' ANP 401 D 1 HETATM 21 C C1' ANP . . . F 3 -21.83 33.189 9.232 1 74.26 ? C1' ANP 401 D 1 HETATM 22 N N9 ANP . . . F 3 -23.201 33.765 9.059 1 63.41 ? N9 ANP 401 D 1 HETATM 23 C C8 ANP . . . F 3 -24.328 33.137 8.63 1 59.65 ? C8 ANP 401 D 1 HETATM 24 N N7 ANP . . . F 3 -25.343 34.017 8.59 1 48.8 ? N7 ANP 401 D 1 HETATM 25 C C5 ANP . . . F 3 -24.879 35.233 9.003 1 51.59 ? C5 ANP 401 D 1 HETATM 26 C C6 ANP . . . F 3 -25.443 36.521 9.175 1 44.13 ? C6 ANP 401 D 1 HETATM 27 N N6 ANP . . . F 3 -26.841 36.774 8.899 1 26.72 ? N6 ANP 401 D 1 HETATM 28 N N1 ANP . . . F 3 -24.674 37.533 9.604 1 37.43 ? N1 ANP 401 D 1 HETATM 29 C C2 ANP . . . F 3 -23.387 37.314 9.866 1 43.53 ? C2 ANP 401 D 1 HETATM 30 N N3 ANP . . . F 3 -22.805 36.117 9.721 1 44.23 ? N3 ANP 401 D 1 HETATM 31 C C4 ANP . . . F 3 -23.518 35.066 9.292 1 50.49 ? C4 ANP 401 D 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #