data_4H3Z # _model_server_result.job_id of4FiQxAVFiuK5DrgD5BTg _model_server_result.datetime_utc '2024-12-22 03:23:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 4H3Z # _exptl.entry_id 4H3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H3Z _cell.length_a 58.85 _cell.length_b 188.09 _cell.length_c 127.68 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 4H3Z _atom_sites.fract_transf_matrix[1][1] 0.016992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007832 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 301 301 SAH SAH . D 3 CL A 1 302 302 CL CL . E 3 CL A 1 303 302 CL CL . F 2 SAH B 1 301 301 SAH SAH . G 4 HOH A 1 401 2 HOH HOH . G 4 HOH A 2 402 4 HOH HOH . G 4 HOH A 3 403 7 HOH HOH . G 4 HOH A 4 404 8 HOH HOH . G 4 HOH A 5 405 10 HOH HOH . G 4 HOH A 6 406 12 HOH HOH . G 4 HOH A 7 407 13 HOH HOH . G 4 HOH A 8 408 14 HOH HOH . G 4 HOH A 9 409 16 HOH HOH . G 4 HOH A 10 410 17 HOH HOH . G 4 HOH A 11 411 21 HOH HOH . G 4 HOH A 12 412 22 HOH HOH . G 4 HOH A 13 413 27 HOH HOH . G 4 HOH A 14 414 29 HOH HOH . G 4 HOH A 15 415 31 HOH HOH . G 4 HOH A 16 416 32 HOH HOH . G 4 HOH A 17 417 33 HOH HOH . G 4 HOH A 18 418 34 HOH HOH . G 4 HOH A 19 419 36 HOH HOH . G 4 HOH A 20 420 37 HOH HOH . G 4 HOH A 21 421 41 HOH HOH . G 4 HOH A 22 422 44 HOH HOH . G 4 HOH A 23 423 45 HOH HOH . G 4 HOH A 24 424 46 HOH HOH . G 4 HOH A 25 425 47 HOH HOH . G 4 HOH A 26 426 48 HOH HOH . G 4 HOH A 27 427 49 HOH HOH . G 4 HOH A 28 428 52 HOH HOH . G 4 HOH A 29 429 53 HOH HOH . G 4 HOH A 30 430 54 HOH HOH . G 4 HOH A 31 431 55 HOH HOH . G 4 HOH A 32 432 56 HOH HOH . G 4 HOH A 33 433 59 HOH HOH . G 4 HOH A 34 434 60 HOH HOH . G 4 HOH A 35 435 61 HOH HOH . G 4 HOH A 36 436 62 HOH HOH . G 4 HOH A 37 437 63 HOH HOH . G 4 HOH A 38 438 64 HOH HOH . G 4 HOH A 39 439 68 HOH HOH . G 4 HOH A 40 440 69 HOH HOH . G 4 HOH A 41 441 74 HOH HOH . G 4 HOH A 42 442 75 HOH HOH . G 4 HOH A 43 443 77 HOH HOH . G 4 HOH A 44 444 78 HOH HOH . G 4 HOH A 45 445 79 HOH HOH . G 4 HOH A 46 446 80 HOH HOH . G 4 HOH A 47 447 81 HOH HOH . G 4 HOH A 48 448 82 HOH HOH . G 4 HOH A 49 449 83 HOH HOH . G 4 HOH A 50 450 85 HOH HOH . G 4 HOH A 51 451 87 HOH HOH . G 4 HOH A 52 452 88 HOH HOH . G 4 HOH A 53 453 89 HOH HOH . G 4 HOH A 54 454 90 HOH HOH . G 4 HOH A 55 455 91 HOH HOH . G 4 HOH A 56 456 92 HOH HOH . G 4 HOH A 57 457 93 HOH HOH . G 4 HOH A 58 458 94 HOH HOH . G 4 HOH A 59 459 95 HOH HOH . G 4 HOH A 60 460 96 HOH HOH . G 4 HOH A 61 461 97 HOH HOH . G 4 HOH A 62 462 98 HOH HOH . G 4 HOH A 63 463 99 HOH HOH . G 4 HOH A 64 464 100 HOH HOH . G 4 HOH A 65 465 101 HOH HOH . G 4 HOH A 66 466 102 HOH HOH . G 4 HOH A 67 467 103 HOH HOH . G 4 HOH A 68 468 104 HOH HOH . G 4 HOH A 69 469 105 HOH HOH . G 4 HOH A 70 470 106 HOH HOH . G 4 HOH A 71 471 108 HOH HOH . G 4 HOH A 72 472 111 HOH HOH . G 4 HOH A 73 473 112 HOH HOH . G 4 HOH A 74 474 113 HOH HOH . G 4 HOH A 75 475 115 HOH HOH . G 4 HOH A 76 476 116 HOH HOH . G 4 HOH A 77 477 117 HOH HOH . G 4 HOH A 78 478 118 HOH HOH . G 4 HOH A 79 479 120 HOH HOH . G 4 HOH A 80 480 121 HOH HOH . G 4 HOH A 81 481 122 HOH HOH . G 4 HOH A 82 482 123 HOH HOH . G 4 HOH A 83 483 128 HOH HOH . G 4 HOH A 84 484 129 HOH HOH . G 4 HOH A 85 485 149 HOH HOH . G 4 HOH A 86 486 162 HOH HOH . G 4 HOH A 87 487 179 HOH HOH . G 4 HOH A 88 488 180 HOH HOH . G 4 HOH A 89 489 181 HOH HOH . G 4 HOH A 90 490 182 HOH HOH . G 4 HOH A 91 491 184 HOH HOH . G 4 HOH A 92 492 185 HOH HOH . G 4 HOH A 93 493 186 HOH HOH . G 4 HOH A 94 494 187 HOH HOH . G 4 HOH A 95 495 188 HOH HOH . G 4 HOH A 96 496 189 HOH HOH . G 4 HOH A 97 497 190 HOH HOH . G 4 HOH A 98 498 191 HOH HOH . G 4 HOH A 99 499 192 HOH HOH . G 4 HOH A 100 500 193 HOH HOH . G 4 HOH A 101 501 194 HOH HOH . G 4 HOH A 102 502 195 HOH HOH . G 4 HOH A 103 503 197 HOH HOH . G 4 HOH A 104 504 199 HOH HOH . G 4 HOH A 105 505 201 HOH HOH . G 4 HOH A 106 506 209 HOH HOH . G 4 HOH A 107 507 210 HOH HOH . H 4 HOH B 1 401 1 HOH HOH . H 4 HOH B 2 402 3 HOH HOH . H 4 HOH B 3 403 5 HOH HOH . H 4 HOH B 4 404 6 HOH HOH . H 4 HOH B 5 405 9 HOH HOH . H 4 HOH B 6 406 11 HOH HOH . H 4 HOH B 7 407 15 HOH HOH . H 4 HOH B 8 408 18 HOH HOH . H 4 HOH B 9 409 19 HOH HOH . H 4 HOH B 10 410 20 HOH HOH . H 4 HOH B 11 411 23 HOH HOH . H 4 HOH B 12 412 24 HOH HOH . H 4 HOH B 13 413 25 HOH HOH . H 4 HOH B 14 414 26 HOH HOH . H 4 HOH B 15 415 28 HOH HOH . H 4 HOH B 16 416 30 HOH HOH . H 4 HOH B 17 417 35 HOH HOH . H 4 HOH B 18 418 38 HOH HOH . H 4 HOH B 19 419 39 HOH HOH . H 4 HOH B 20 420 40 HOH HOH . H 4 HOH B 21 421 42 HOH HOH . H 4 HOH B 22 422 43 HOH HOH . H 4 HOH B 23 423 50 HOH HOH . H 4 HOH B 24 424 51 HOH HOH . H 4 HOH B 25 425 57 HOH HOH . H 4 HOH B 26 426 58 HOH HOH . H 4 HOH B 27 427 65 HOH HOH . H 4 HOH B 28 428 66 HOH HOH . H 4 HOH B 29 429 67 HOH HOH . H 4 HOH B 30 430 70 HOH HOH . H 4 HOH B 31 431 71 HOH HOH . H 4 HOH B 32 432 72 HOH HOH . H 4 HOH B 33 433 73 HOH HOH . H 4 HOH B 34 434 76 HOH HOH . H 4 HOH B 35 435 84 HOH HOH . H 4 HOH B 36 436 86 HOH HOH . H 4 HOH B 37 437 107 HOH HOH . H 4 HOH B 38 438 109 HOH HOH . H 4 HOH B 39 439 110 HOH HOH . H 4 HOH B 40 440 114 HOH HOH . H 4 HOH B 41 441 119 HOH HOH . H 4 HOH B 42 442 124 HOH HOH . H 4 HOH B 43 443 125 HOH HOH . H 4 HOH B 44 444 126 HOH HOH . H 4 HOH B 45 445 127 HOH HOH . H 4 HOH B 46 446 130 HOH HOH . H 4 HOH B 47 447 131 HOH HOH . H 4 HOH B 48 448 132 HOH HOH . H 4 HOH B 49 449 133 HOH HOH . H 4 HOH B 50 450 134 HOH HOH . H 4 HOH B 51 451 135 HOH HOH . H 4 HOH B 52 452 136 HOH HOH . H 4 HOH B 53 453 137 HOH HOH . H 4 HOH B 54 454 138 HOH HOH . H 4 HOH B 55 455 139 HOH HOH . H 4 HOH B 56 456 140 HOH HOH . H 4 HOH B 57 457 141 HOH HOH . H 4 HOH B 58 458 142 HOH HOH . H 4 HOH B 59 459 143 HOH HOH . H 4 HOH B 60 460 144 HOH HOH . H 4 HOH B 61 461 145 HOH HOH . H 4 HOH B 62 462 146 HOH HOH . H 4 HOH B 63 463 147 HOH HOH . H 4 HOH B 64 464 148 HOH HOH . H 4 HOH B 65 465 150 HOH HOH . H 4 HOH B 66 466 151 HOH HOH . H 4 HOH B 67 467 152 HOH HOH . H 4 HOH B 68 468 153 HOH HOH . H 4 HOH B 69 469 154 HOH HOH . H 4 HOH B 70 470 155 HOH HOH . H 4 HOH B 71 471 156 HOH HOH . H 4 HOH B 72 472 157 HOH HOH . H 4 HOH B 73 473 158 HOH HOH . H 4 HOH B 74 474 159 HOH HOH . H 4 HOH B 75 475 160 HOH HOH . H 4 HOH B 76 476 161 HOH HOH . H 4 HOH B 77 477 163 HOH HOH . H 4 HOH B 78 478 164 HOH HOH . H 4 HOH B 79 479 165 HOH HOH . H 4 HOH B 80 480 166 HOH HOH . H 4 HOH B 81 481 167 HOH HOH . H 4 HOH B 82 482 168 HOH HOH . H 4 HOH B 83 483 169 HOH HOH . H 4 HOH B 84 484 170 HOH HOH . H 4 HOH B 85 485 171 HOH HOH . H 4 HOH B 86 486 172 HOH HOH . H 4 HOH B 87 487 173 HOH HOH . H 4 HOH B 88 488 174 HOH HOH . H 4 HOH B 89 489 175 HOH HOH . H 4 HOH B 90 490 176 HOH HOH . H 4 HOH B 91 491 177 HOH HOH . H 4 HOH B 92 492 178 HOH HOH . H 4 HOH B 93 493 183 HOH HOH . H 4 HOH B 94 494 196 HOH HOH . H 4 HOH B 95 495 198 HOH HOH . H 4 HOH B 96 496 200 HOH HOH . H 4 HOH B 97 497 202 HOH HOH . H 4 HOH B 98 498 203 HOH HOH . H 4 HOH B 99 499 204 HOH HOH . H 4 HOH B 100 500 205 HOH HOH . H 4 HOH B 101 501 206 HOH HOH . H 4 HOH B 102 502 207 HOH HOH . H 4 HOH B 103 503 208 HOH HOH . H 4 HOH B 104 504 211 HOH HOH . H 4 HOH B 105 505 212 HOH HOH . H 4 HOH B 106 506 213 HOH HOH . H 4 HOH B 107 507 214 HOH HOH . H 4 HOH B 108 508 215 HOH HOH . H 4 HOH B 109 509 216 HOH HOH . H 4 HOH B 110 510 217 HOH HOH . H 4 HOH B 111 511 218 HOH HOH . H 4 HOH B 112 512 219 HOH HOH . H 4 HOH B 113 513 220 HOH HOH . H 4 HOH B 114 514 221 HOH HOH . H 4 HOH B 115 515 222 HOH HOH . H 4 HOH B 116 516 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . F 2 -16.788 -15.401 -18.256 1 37.69 ? N SAH 301 B 1 HETATM 2 C CA SAH . . . F 2 -15.448 -15.941 -18.09 1 38.12 ? CA SAH 301 B 1 HETATM 3 C CB SAH . . . F 2 -15.434 -17.063 -17.065 1 37.36 ? CB SAH 301 B 1 HETATM 4 C CG SAH . . . F 2 -15.856 -16.643 -15.663 1 37.02 ? CG SAH 301 B 1 HETATM 5 S SD SAH . . . F 2 -15.741 -18.098 -14.665 1 34.04 ? SD SAH 301 B 1 HETATM 6 C C SAH . . . F 2 -15.018 -16.59 -19.382 1 39.93 ? C SAH 301 B 1 HETATM 7 O O SAH . . . F 2 -15.83 -17.095 -20.165 1 39.94 ? O SAH 301 B 1 HETATM 8 O OXT SAH . . . F 2 -13.831 -16.672 -19.669 1 39.16 ? OXT SAH 301 B 1 HETATM 9 C C5' SAH . . . F 2 -15.553 -17.388 -13.076 1 32.56 ? C5' SAH 301 B 1 HETATM 10 C C4' SAH . . . F 2 -14.121 -17.455 -12.608 1 31.68 ? C4' SAH 301 B 1 HETATM 11 O O4' SAH . . . F 2 -13.662 -18.803 -12.593 1 29.11 ? O4' SAH 301 B 1 HETATM 12 C C3' SAH . . . F 2 -13.095 -16.68 -13.446 1 31.47 ? C3' SAH 301 B 1 HETATM 13 O O3' SAH . . . F 2 -13.025 -15.346 -13 1 30.95 ? O3' SAH 301 B 1 HETATM 14 C C2' SAH . . . F 2 -11.764 -17.372 -13.122 1 29.82 ? C2' SAH 301 B 1 HETATM 15 O O2' SAH . . . F 2 -11.109 -16.763 -11.951 1 27.19 ? O2' SAH 301 B 1 HETATM 16 C C1' SAH . . . F 2 -12.248 -18.793 -12.887 1 27.71 ? C1' SAH 301 B 1 HETATM 17 N N9 SAH . . . F 2 -12.027 -19.733 -14.02 1 27.39 ? N9 SAH 301 B 1 HETATM 18 C C8 SAH . . . F 2 -12.945 -20.352 -14.787 1 26.16 ? C8 SAH 301 B 1 HETATM 19 N N7 SAH . . . F 2 -12.36 -21.212 -15.653 1 25.47 ? N7 SAH 301 B 1 HETATM 20 C C5 SAH . . . F 2 -11.031 -21.097 -15.403 1 26.17 ? C5 SAH 301 B 1 HETATM 21 C C6 SAH . . . F 2 -9.82 -21.708 -15.935 1 25.29 ? C6 SAH 301 B 1 HETATM 22 N N6 SAH . . . F 2 -9.948 -22.565 -16.95 1 27.11 ? N6 SAH 301 B 1 HETATM 23 N N1 SAH . . . F 2 -8.636 -21.353 -15.422 1 26.28 ? N1 SAH 301 B 1 HETATM 24 C C2 SAH . . . F 2 -8.494 -20.462 -14.413 1 25.25 ? C2 SAH 301 B 1 HETATM 25 N N3 SAH . . . F 2 -9.571 -19.868 -13.865 1 26.2 ? N3 SAH 301 B 1 HETATM 26 C C4 SAH . . . F 2 -10.815 -20.162 -14.329 1 25.71 ? C4 SAH 301 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 26 #