data_4H45 # _model_server_result.job_id 4EaJ3TDUdPzU6KelMctP1w _model_server_result.datetime_utc '2024-10-20 19:48:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h45 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4H45 # _exptl.entry_id 4H45 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H45 _cell.length_a 53.996 _cell.length_b 83.621 _cell.length_c 166.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H45 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 53.996 83.621 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 53.996 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 83.621 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 118 A ASP 118 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc2 A OD1 ASP 118 A ASP 118 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc3 A O LEU 120 A LEU 120 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc4 A OE1 GLU 280 A GLU 280 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc5 C ZN ZN . A ZN 402 1_555 E O2 PO4 . A PO4 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc6 D ZN ZN . A ZN 403 1_555 E O2 PO4 . A PO4 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id F6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-6-PHOSPHATE;6-O-phosphono-beta-D-fructose;6-O-phosphono-D-fructose;6-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 F6P sing 83 n n O1 HO1 F6P sing 84 n n C1 C2 F6P sing 85 n n C1 H11 F6P sing 86 n n C1 H12 F6P sing 87 n n C2 O2 F6P sing 88 n n C2 C3 F6P sing 89 n n C2 O5 F6P sing 90 n n O2 HO2 F6P sing 91 n n C3 O3 F6P sing 92 n n C3 C4 F6P sing 93 n n C3 H3 F6P sing 94 n n O3 HO3 F6P sing 95 n n C4 O4 F6P sing 96 n n C4 C5 F6P sing 97 n n C4 H4 F6P sing 98 n n O4 HO4 F6P sing 99 n n C5 O5 F6P sing 100 n n C5 C6 F6P sing 101 n n C5 H5 F6P sing 102 n n C6 O6 F6P sing 103 n n C6 H61 F6P sing 104 n n C6 H62 F6P sing 105 n n O6 P F6P sing 106 n n P O1P F6P doub 107 n n P O2P F6P sing 108 n n P O3P F6P sing 109 n n O2P HOP2 F6P sing 110 n n O3P HOP3 F6P sing 111 n n # _pdbx_chem_comp_identifier.comp_id F6P _pdbx_chem_comp_identifier.identifier b-D-Fruf6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4H45 _atom_sites.fract_transf_matrix[1][1] 0.01852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F6P A 1 401 339 F6P F6P . C 3 ZN A 1 402 341 ZN ZN . D 3 ZN A 1 403 342 ZN ZN . E 4 PO4 A 1 404 340 PO4 PO4 . F 4 PO4 A 1 405 343 PO4 PO4 . G 5 HOH A 1 501 501 HOH HOH . G 5 HOH A 2 502 502 HOH HOH . G 5 HOH A 3 503 503 HOH HOH . G 5 HOH A 4 504 504 HOH HOH . G 5 HOH A 5 505 505 HOH HOH . G 5 HOH A 6 506 506 HOH HOH . G 5 HOH A 7 507 508 HOH HOH . G 5 HOH A 8 508 509 HOH HOH . G 5 HOH A 9 509 510 HOH HOH . G 5 HOH A 10 510 511 HOH HOH . G 5 HOH A 11 511 512 HOH HOH . G 5 HOH A 12 512 513 HOH HOH . G 5 HOH A 13 513 514 HOH HOH . G 5 HOH A 14 514 515 HOH HOH . G 5 HOH A 15 515 516 HOH HOH . G 5 HOH A 16 516 517 HOH HOH . G 5 HOH A 17 517 518 HOH HOH . G 5 HOH A 18 518 519 HOH HOH . G 5 HOH A 19 519 520 HOH HOH . G 5 HOH A 20 520 521 HOH HOH . G 5 HOH A 21 521 523 HOH HOH . G 5 HOH A 22 522 527 HOH HOH . G 5 HOH A 23 523 528 HOH HOH . G 5 HOH A 24 524 529 HOH HOH . G 5 HOH A 25 525 530 HOH HOH . G 5 HOH A 26 526 532 HOH HOH . G 5 HOH A 27 527 534 HOH HOH . G 5 HOH A 28 528 535 HOH HOH . G 5 HOH A 29 529 536 HOH HOH . G 5 HOH A 30 530 537 HOH HOH . G 5 HOH A 31 531 538 HOH HOH . G 5 HOH A 32 532 541 HOH HOH . G 5 HOH A 33 533 542 HOH HOH . G 5 HOH A 34 534 543 HOH HOH . G 5 HOH A 35 535 546 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 F6P . . . B 2 16.2 32.262 27.591 1 38.6 ? O1 F6P 401 A 1 HETATM 2 C C1 F6P . . . B 2 17.313 32.25 26.723 1 35.26 ? C1 F6P 401 A 1 HETATM 3 C C2 F6P . . . B 2 18.093 33.454 27.178 1 34.65 ? C2 F6P 401 A 1 HETATM 4 O O2 F6P . . . B 2 17.707 34.64 26.441 1 35.77 ? O2 F6P 401 A 1 HETATM 5 C C3 F6P . . . B 2 19.58 33.217 27.218 1 34.56 ? C3 F6P 401 A 1 HETATM 6 O O3 F6P . . . B 2 20.21 33.408 25.974 1 34.57 ? O3 F6P 401 A 1 HETATM 7 C C4 F6P . . . B 2 20.001 34.255 28.22 1 34.24 ? C4 F6P 401 A 1 HETATM 8 O O4 F6P . . . B 2 21.122 33.831 28.936 1 36.66 ? O4 F6P 401 A 1 HETATM 9 C C5 F6P . . . B 2 18.869 34.22 29.194 1 33.85 ? C5 F6P 401 A 1 HETATM 10 O O5 F6P . . . B 2 17.757 33.722 28.506 1 34 ? O5 F6P 401 A 1 HETATM 11 C C6 F6P . . . B 2 18.582 35.61 29.702 1 35.1 ? C6 F6P 401 A 1 HETATM 12 O O6 F6P . . . B 2 17.913 35.46 30.93 1 36.32 ? O6 F6P 401 A 1 HETATM 13 P P F6P . . . B 2 18.056 36.588 32.062 1 37.45 ? P F6P 401 A 1 HETATM 14 O O1P F6P . . . B 2 17.029 36.262 33.121 1 36.57 ? O1P F6P 401 A 1 HETATM 15 O O2P F6P . . . B 2 17.813 37.932 31.394 1 36.84 ? O2P F6P 401 A 1 HETATM 16 O O3P F6P . . . B 2 19.448 36.571 32.659 1 36.66 ? O3P F6P 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 16 #