data_4H46 # _model_server_result.job_id zI7q5PyxMROWGJuUk_XB-A _model_server_result.datetime_utc '2024-11-29 20:10:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h46 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4H46 # _exptl.entry_id 4H46 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H46 _cell.length_a 62.561 _cell.length_b 78.673 _cell.length_c 164.928 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H46 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -62.561 0 0 3 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -62.561 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 128 A CYS 128 1_555 F C1 NEN . A NEN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc1 A OE2 GLU 97 A GLU 97 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc2 A OD2 ASP 118 A ASP 118 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc3 A OD2 ASP 121 A ASP 121 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc4 A OE2 GLU 280 A GLU 280 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? metalc ? metalc5 C MG MG . A MG 402 1_555 D O2 PO4 . A PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? metalc ? metalc6 C MG MG . A MG 402 1_555 D O1 PO4 . A PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id F6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-6-PHOSPHATE;6-O-phosphono-beta-D-fructose;6-O-phosphono-D-fructose;6-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 F6P sing 122 n n O1 HO1 F6P sing 123 n n C1 C2 F6P sing 124 n n C1 H11 F6P sing 125 n n C1 H12 F6P sing 126 n n C2 O2 F6P sing 127 n n C2 C3 F6P sing 128 n n C2 O5 F6P sing 129 n n O2 HO2 F6P sing 130 n n C3 O3 F6P sing 131 n n C3 C4 F6P sing 132 n n C3 H3 F6P sing 133 n n O3 HO3 F6P sing 134 n n C4 O4 F6P sing 135 n n C4 C5 F6P sing 136 n n C4 H4 F6P sing 137 n n O4 HO4 F6P sing 138 n n C5 O5 F6P sing 139 n n C5 C6 F6P sing 140 n n C5 H5 F6P sing 141 n n C6 O6 F6P sing 142 n n C6 H61 F6P sing 143 n n C6 H62 F6P sing 144 n n O6 P F6P sing 145 n n P O1P F6P doub 146 n n P O2P F6P sing 147 n n P O3P F6P sing 148 n n O2P HOP2 F6P sing 149 n n O3P HOP3 F6P sing 150 n n # _pdbx_chem_comp_identifier.comp_id F6P _pdbx_chem_comp_identifier.identifier b-D-Fruf6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4H46 _atom_sites.fract_transf_matrix[1][1] 0.015984 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F6P A 1 401 338 F6P F6P . C 3 MG A 1 402 339 MG MG . D 4 PO4 A 1 403 340 PO4 PO4 . E 5 AMP A 1 404 341 AMP AMP . F 6 NEN A 1 405 351 NEN NEQ . G 7 HOH A 1 501 501 HOH HOH . G 7 HOH A 2 502 502 HOH HOH . G 7 HOH A 3 503 503 HOH HOH . G 7 HOH A 4 504 504 HOH HOH . G 7 HOH A 5 505 505 HOH HOH . G 7 HOH A 6 506 506 HOH HOH . G 7 HOH A 7 507 507 HOH HOH . G 7 HOH A 8 508 508 HOH HOH . G 7 HOH A 9 509 509 HOH HOH . G 7 HOH A 10 510 510 HOH HOH . G 7 HOH A 11 511 511 HOH HOH . G 7 HOH A 12 512 512 HOH HOH . G 7 HOH A 13 513 513 HOH HOH . G 7 HOH A 14 514 514 HOH HOH . G 7 HOH A 15 515 515 HOH HOH . G 7 HOH A 16 516 516 HOH HOH . G 7 HOH A 17 517 517 HOH HOH . G 7 HOH A 18 518 518 HOH HOH . G 7 HOH A 19 519 519 HOH HOH . G 7 HOH A 20 520 520 HOH HOH . G 7 HOH A 21 521 521 HOH HOH . G 7 HOH A 22 522 522 HOH HOH . G 7 HOH A 23 523 523 HOH HOH . G 7 HOH A 24 524 524 HOH HOH . G 7 HOH A 25 525 525 HOH HOH . G 7 HOH A 26 526 526 HOH HOH . G 7 HOH A 27 527 527 HOH HOH . G 7 HOH A 28 528 528 HOH HOH . G 7 HOH A 29 529 529 HOH HOH . G 7 HOH A 30 530 530 HOH HOH . G 7 HOH A 31 531 531 HOH HOH . G 7 HOH A 32 532 532 HOH HOH . G 7 HOH A 33 533 533 HOH HOH . G 7 HOH A 34 534 534 HOH HOH . G 7 HOH A 35 535 535 HOH HOH . G 7 HOH A 36 536 536 HOH HOH . G 7 HOH A 37 537 537 HOH HOH . G 7 HOH A 38 538 538 HOH HOH . G 7 HOH A 39 539 539 HOH HOH . G 7 HOH A 40 540 540 HOH HOH . G 7 HOH A 41 541 541 HOH HOH . G 7 HOH A 42 542 542 HOH HOH . G 7 HOH A 43 543 543 HOH HOH . G 7 HOH A 44 544 544 HOH HOH . G 7 HOH A 45 545 545 HOH HOH . G 7 HOH A 46 546 546 HOH HOH . G 7 HOH A 47 547 547 HOH HOH . G 7 HOH A 48 548 548 HOH HOH . G 7 HOH A 49 549 549 HOH HOH . G 7 HOH A 50 550 550 HOH HOH . G 7 HOH A 51 551 551 HOH HOH . G 7 HOH A 52 552 552 HOH HOH . G 7 HOH A 53 553 553 HOH HOH . G 7 HOH A 54 554 554 HOH HOH . G 7 HOH A 55 555 555 HOH HOH . G 7 HOH A 56 556 556 HOH HOH . G 7 HOH A 57 557 557 HOH HOH . G 7 HOH A 58 558 558 HOH HOH . G 7 HOH A 59 559 559 HOH HOH . G 7 HOH A 60 560 560 HOH HOH . G 7 HOH A 61 561 561 HOH HOH . G 7 HOH A 62 562 562 HOH HOH . G 7 HOH A 63 563 563 HOH HOH . G 7 HOH A 64 564 564 HOH HOH . G 7 HOH A 65 565 565 HOH HOH . G 7 HOH A 66 566 566 HOH HOH . G 7 HOH A 67 567 567 HOH HOH . G 7 HOH A 68 568 568 HOH HOH . G 7 HOH A 69 569 569 HOH HOH . G 7 HOH A 70 570 570 HOH HOH . G 7 HOH A 71 571 571 HOH HOH . G 7 HOH A 72 572 572 HOH HOH . G 7 HOH A 73 573 573 HOH HOH . G 7 HOH A 74 574 574 HOH HOH . G 7 HOH A 75 575 575 HOH HOH . G 7 HOH A 76 576 576 HOH HOH . G 7 HOH A 77 577 577 HOH HOH . G 7 HOH A 78 578 579 HOH HOH . G 7 HOH A 79 579 580 HOH HOH . G 7 HOH A 80 580 581 HOH HOH . G 7 HOH A 81 581 582 HOH HOH . G 7 HOH A 82 582 583 HOH HOH . G 7 HOH A 83 583 584 HOH HOH . G 7 HOH A 84 584 585 HOH HOH . G 7 HOH A 85 585 586 HOH HOH . G 7 HOH A 86 586 587 HOH HOH . G 7 HOH A 87 587 588 HOH HOH . G 7 HOH A 88 588 589 HOH HOH . G 7 HOH A 89 589 590 HOH HOH . G 7 HOH A 90 590 591 HOH HOH . G 7 HOH A 91 591 592 HOH HOH . G 7 HOH A 92 592 593 HOH HOH . G 7 HOH A 93 593 594 HOH HOH . G 7 HOH A 94 594 595 HOH HOH . G 7 HOH A 95 595 596 HOH HOH . G 7 HOH A 96 596 597 HOH HOH . G 7 HOH A 97 597 598 HOH HOH . G 7 HOH A 98 598 599 HOH HOH . G 7 HOH A 99 599 600 HOH HOH . G 7 HOH A 100 600 601 HOH HOH . G 7 HOH A 101 601 602 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 F6P . . . B 2 -20.398 -8.658 -26.007 1 29.39 ? O1 F6P 401 A 1 HETATM 2 C C1 F6P . . . B 2 -20.125 -7.362 -26.46 1 20.2 ? C1 F6P 401 A 1 HETATM 3 C C2 F6P . . . B 2 -21.469 -6.666 -26.716 1 22.15 ? C2 F6P 401 A 1 HETATM 4 O O2 F6P . . . B 2 -21.436 -5.63 -25.725 1 21.14 ? O2 F6P 401 A 1 HETATM 5 C C3 F6P . . . B 2 -22.827 -7.422 -26.662 1 20.95 ? C3 F6P 401 A 1 HETATM 6 O O3 F6P . . . B 2 -23.411 -7.476 -25.379 1 21.07 ? O3 F6P 401 A 1 HETATM 7 C C4 F6P . . . B 2 -23.7 -6.656 -27.658 1 19.39 ? C4 F6P 401 A 1 HETATM 8 O O4 F6P . . . B 2 -24.68 -7.449 -28.258 1 20.06 ? O4 F6P 401 A 1 HETATM 9 C C5 F6P . . . B 2 -22.68 -6.338 -28.735 1 18.79 ? C5 F6P 401 A 1 HETATM 10 O O5 F6P . . . B 2 -21.465 -6.124 -28.051 1 22.42 ? O5 F6P 401 A 1 HETATM 11 C C6 F6P . . . B 2 -22.919 -5.123 -29.592 1 14.3 ? C6 F6P 401 A 1 HETATM 12 O O6 F6P . . . B 2 -21.797 -5.024 -30.427 1 15.64 ? O6 F6P 401 A 1 HETATM 13 P P F6P . . . B 2 -21.779 -4.039 -31.722 1 18.12 ? P F6P 401 A 1 HETATM 14 O O1P F6P . . . B 2 -20.74 -4.495 -32.716 1 21.48 ? O1P F6P 401 A 1 HETATM 15 O O2P F6P . . . B 2 -21.281 -2.701 -31.294 1 22.88 ? O2P F6P 401 A 1 HETATM 16 O O3P F6P . . . B 2 -23.178 -3.83 -32.355 1 17.84 ? O3P F6P 401 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #