data_4H46 # _model_server_result.job_id i7OmA5fSa9MNwy-R99pYjg _model_server_result.datetime_utc '2024-11-29 20:15:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h46 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4H46 # _exptl.entry_id 4H46 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H46 _cell.length_a 62.561 _cell.length_b 78.673 _cell.length_c 164.928 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H46 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -62.561 0 0 3 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -62.561 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 128 A CYS 128 1_555 F C1 NEN . A NEN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc1 A OE2 GLU 97 A GLU 97 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc2 A OD2 ASP 118 A ASP 118 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc3 A OD2 ASP 121 A ASP 121 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc4 A OE2 GLU 280 A GLU 280 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? metalc ? metalc5 C MG MG . A MG 402 1_555 D O2 PO4 . A PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? metalc ? metalc6 C MG MG . A MG 402 1_555 D O1 PO4 . A PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 4H46 _atom_sites.fract_transf_matrix[1][1] 0.015984 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F6P A 1 401 338 F6P F6P . C 3 MG A 1 402 339 MG MG . D 4 PO4 A 1 403 340 PO4 PO4 . E 5 AMP A 1 404 341 AMP AMP . F 6 NEN A 1 405 351 NEN NEQ . G 7 HOH A 1 501 501 HOH HOH . G 7 HOH A 2 502 502 HOH HOH . G 7 HOH A 3 503 503 HOH HOH . G 7 HOH A 4 504 504 HOH HOH . G 7 HOH A 5 505 505 HOH HOH . G 7 HOH A 6 506 506 HOH HOH . G 7 HOH A 7 507 507 HOH HOH . G 7 HOH A 8 508 508 HOH HOH . G 7 HOH A 9 509 509 HOH HOH . G 7 HOH A 10 510 510 HOH HOH . G 7 HOH A 11 511 511 HOH HOH . G 7 HOH A 12 512 512 HOH HOH . G 7 HOH A 13 513 513 HOH HOH . G 7 HOH A 14 514 514 HOH HOH . G 7 HOH A 15 515 515 HOH HOH . G 7 HOH A 16 516 516 HOH HOH . G 7 HOH A 17 517 517 HOH HOH . G 7 HOH A 18 518 518 HOH HOH . G 7 HOH A 19 519 519 HOH HOH . G 7 HOH A 20 520 520 HOH HOH . G 7 HOH A 21 521 521 HOH HOH . G 7 HOH A 22 522 522 HOH HOH . G 7 HOH A 23 523 523 HOH HOH . G 7 HOH A 24 524 524 HOH HOH . G 7 HOH A 25 525 525 HOH HOH . G 7 HOH A 26 526 526 HOH HOH . G 7 HOH A 27 527 527 HOH HOH . G 7 HOH A 28 528 528 HOH HOH . G 7 HOH A 29 529 529 HOH HOH . G 7 HOH A 30 530 530 HOH HOH . G 7 HOH A 31 531 531 HOH HOH . G 7 HOH A 32 532 532 HOH HOH . G 7 HOH A 33 533 533 HOH HOH . G 7 HOH A 34 534 534 HOH HOH . G 7 HOH A 35 535 535 HOH HOH . G 7 HOH A 36 536 536 HOH HOH . G 7 HOH A 37 537 537 HOH HOH . G 7 HOH A 38 538 538 HOH HOH . G 7 HOH A 39 539 539 HOH HOH . G 7 HOH A 40 540 540 HOH HOH . G 7 HOH A 41 541 541 HOH HOH . G 7 HOH A 42 542 542 HOH HOH . G 7 HOH A 43 543 543 HOH HOH . G 7 HOH A 44 544 544 HOH HOH . G 7 HOH A 45 545 545 HOH HOH . G 7 HOH A 46 546 546 HOH HOH . G 7 HOH A 47 547 547 HOH HOH . G 7 HOH A 48 548 548 HOH HOH . G 7 HOH A 49 549 549 HOH HOH . G 7 HOH A 50 550 550 HOH HOH . G 7 HOH A 51 551 551 HOH HOH . G 7 HOH A 52 552 552 HOH HOH . G 7 HOH A 53 553 553 HOH HOH . G 7 HOH A 54 554 554 HOH HOH . G 7 HOH A 55 555 555 HOH HOH . G 7 HOH A 56 556 556 HOH HOH . G 7 HOH A 57 557 557 HOH HOH . G 7 HOH A 58 558 558 HOH HOH . G 7 HOH A 59 559 559 HOH HOH . G 7 HOH A 60 560 560 HOH HOH . G 7 HOH A 61 561 561 HOH HOH . G 7 HOH A 62 562 562 HOH HOH . G 7 HOH A 63 563 563 HOH HOH . G 7 HOH A 64 564 564 HOH HOH . G 7 HOH A 65 565 565 HOH HOH . G 7 HOH A 66 566 566 HOH HOH . G 7 HOH A 67 567 567 HOH HOH . G 7 HOH A 68 568 568 HOH HOH . G 7 HOH A 69 569 569 HOH HOH . G 7 HOH A 70 570 570 HOH HOH . G 7 HOH A 71 571 571 HOH HOH . G 7 HOH A 72 572 572 HOH HOH . G 7 HOH A 73 573 573 HOH HOH . G 7 HOH A 74 574 574 HOH HOH . G 7 HOH A 75 575 575 HOH HOH . G 7 HOH A 76 576 576 HOH HOH . G 7 HOH A 77 577 577 HOH HOH . G 7 HOH A 78 578 579 HOH HOH . G 7 HOH A 79 579 580 HOH HOH . G 7 HOH A 80 580 581 HOH HOH . G 7 HOH A 81 581 582 HOH HOH . G 7 HOH A 82 582 583 HOH HOH . G 7 HOH A 83 583 584 HOH HOH . G 7 HOH A 84 584 585 HOH HOH . G 7 HOH A 85 585 586 HOH HOH . G 7 HOH A 86 586 587 HOH HOH . G 7 HOH A 87 587 588 HOH HOH . G 7 HOH A 88 588 589 HOH HOH . G 7 HOH A 89 589 590 HOH HOH . G 7 HOH A 90 590 591 HOH HOH . G 7 HOH A 91 591 592 HOH HOH . G 7 HOH A 92 592 593 HOH HOH . G 7 HOH A 93 593 594 HOH HOH . G 7 HOH A 94 594 595 HOH HOH . G 7 HOH A 95 595 596 HOH HOH . G 7 HOH A 96 596 597 HOH HOH . G 7 HOH A 97 597 598 HOH HOH . G 7 HOH A 98 598 599 HOH HOH . G 7 HOH A 99 599 600 HOH HOH . G 7 HOH A 100 600 601 HOH HOH . G 7 HOH A 101 601 602 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . E 5 -26.516 -32.595 -7.487 1 22.7 ? P AMP 404 A 1 HETATM 2 O O1P AMP . . . E 5 -25.243 -32.428 -8.293 1 20.57 ? O1P AMP 404 A 1 HETATM 3 O O2P AMP . . . E 5 -26.945 -31.286 -6.842 1 23.61 ? O2P AMP 404 A 1 HETATM 4 O O3P AMP . . . E 5 -26.483 -33.783 -6.519 1 22.35 ? O3P AMP 404 A 1 HETATM 5 O O5' AMP . . . E 5 -27.772 -32.905 -8.475 1 21.77 ? O5' AMP 404 A 1 HETATM 6 C C5' AMP . . . E 5 -27.698 -33.797 -9.603 1 22.55 ? C5' AMP 404 A 1 HETATM 7 C C4' AMP . . . E 5 -28.687 -33.328 -10.692 1 19.78 ? C4' AMP 404 A 1 HETATM 8 O O4' AMP . . . E 5 -30.034 -33.146 -10.202 1 19.86 ? O4' AMP 404 A 1 HETATM 9 C C3' AMP . . . E 5 -28.338 -31.972 -11.241 1 19.19 ? C3' AMP 404 A 1 HETATM 10 O O3' AMP . . . E 5 -27.332 -32.012 -12.25 1 20.47 ? O3' AMP 404 A 1 HETATM 11 C C2' AMP . . . E 5 -29.665 -31.564 -11.849 1 20.58 ? C2' AMP 404 A 1 HETATM 12 O O2' AMP . . . E 5 -29.868 -32.343 -12.999 1 18.98 ? O2' AMP 404 A 1 HETATM 13 C C1' AMP . . . E 5 -30.688 -32.063 -10.887 1 21.42 ? C1' AMP 404 A 1 HETATM 14 N N9 AMP . . . E 5 -30.82 -30.96 -9.935 1 25.61 ? N9 AMP 404 A 1 HETATM 15 C C8 AMP . . . E 5 -30.133 -30.952 -8.77 1 27.11 ? C8 AMP 404 A 1 HETATM 16 N N7 AMP . . . E 5 -30.386 -29.848 -8.044 1 25.23 ? N7 AMP 404 A 1 HETATM 17 C C5 AMP . . . E 5 -31.274 -29.135 -8.761 1 24.24 ? C5 AMP 404 A 1 HETATM 18 C C6 AMP . . . E 5 -31.947 -27.855 -8.54 1 23.92 ? C6 AMP 404 A 1 HETATM 19 N N6 AMP . . . E 5 -31.702 -27.161 -7.39 1 22.07 ? N6 AMP 404 A 1 HETATM 20 N N1 AMP . . . E 5 -32.809 -27.44 -9.492 1 25.61 ? N1 AMP 404 A 1 HETATM 21 C C2 AMP . . . E 5 -33.054 -28.152 -10.613 1 25.79 ? C2 AMP 404 A 1 HETATM 22 N N3 AMP . . . E 5 -32.448 -29.317 -10.888 1 28.06 ? N3 AMP 404 A 1 HETATM 23 C C4 AMP . . . E 5 -31.552 -29.85 -10.009 1 26.2 ? C4 AMP 404 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #