data_4H4M
#
_model_server_result.job_id            lLK9biz-jxa1HqPWiMYbWg 
_model_server_result.datetime_utc      '2025-01-11 01:08:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4h4m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    4H4M 
#
_exptl.entry_id    4H4M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              444.268 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2E)-3-(3-chloro-5-{4-chloro-2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}phenyl)prop-2-enenitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.43 
_cell.angle_gamma         90 
_cell.entry_id            4H4M 
_cell.length_a            225.133 
_cell.length_b            69.208 
_cell.length_c            104.138 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4H4M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H15 Cl2 N3 O4' 
_chem_comp.formula_weight    444.268 
_chem_comp.id                494 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2E)-3-(3-chloro-5-{4-chloro-2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}phenyl)prop-2-enenitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL7 C01 494 sing 1 n n 
C01 C02 494 doub 2 n y 
C01 C00 494 sing 3 n y 
C02 C03 494 sing 4 n y 
C00 C05 494 doub 5 n y 
O10 C0V 494 doub 6 n n 
C03 C04 494 doub 7 n y 
C05 C04 494 sing 8 n y 
C05 O0B 494 sing 9 n n 
N0W C0V 494 sing 10 n n 
N0W C0X 494 sing 11 n n 
C0V N0S 494 sing 12 n n 
C04 O0A 494 sing 13 n n 
O0B C0O 494 sing 14 n n 
O12 C0X 494 doub 15 n n 
C0X C0Y 494 sing 16 n n 
N0S C0P 494 sing 17 n n 
N0S C0Z 494 sing 18 n n 
O0A C0C 494 sing 19 n n 
C0O C0P 494 sing 20 n n 
C0Y C0Z 494 doub 21 n n 
C0D C0C 494 doub 22 n y 
C0D C0E 494 sing 23 n y 
C0C C0H 494 sing 24 n y 
CL0 C0E 494 sing 25 n n 
C0E C0F 494 doub 26 n y 
C0H C0G 494 doub 27 n y 
C0F C0G 494 sing 28 n y 
C0G C0M 494 sing 29 n n 
C0M C15 494 doub 30 e n 
C15 C17 494 sing 31 n n 
C17 N19 494 trip 32 n n 
C00 H1 494 sing 33 n n 
C02 H2 494 sing 34 n n 
C03 H3 494 sing 35 n n 
C0D H4 494 sing 36 n n 
C0F H5 494 sing 37 n n 
C0H H6 494 sing 38 n n 
C0M H7 494 sing 39 n n 
C0O H8 494 sing 40 n n 
C0O H9 494 sing 41 n n 
C0P H10 494 sing 42 n n 
C0P H11 494 sing 43 n n 
N0W H12 494 sing 44 n n 
C0Y H13 494 sing 45 n n 
C0Z H14 494 sing 46 n n 
C15 H15 494 sing 47 n n 
#
_atom_sites.entry_id                     4H4M 
_atom_sites.fract_transf_matrix[1][1]    0.004442 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00131 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014449 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010012 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 494 A 1 601 1 494 494 . 
D 4 EDO B 1 501 1 EDO EDO . 
E 5 HOH A 1 701 2 HOH HOH . 
E 5 HOH A 2 702 3 HOH HOH . 
E 5 HOH A 3 703 4 HOH HOH . 
E 5 HOH A 4 704 5 HOH HOH . 
E 5 HOH A 5 705 10 HOH HOH . 
E 5 HOH A 6 706 11 HOH HOH . 
E 5 HOH A 7 707 12 HOH HOH . 
E 5 HOH A 8 708 14 HOH HOH . 
E 5 HOH A 9 709 15 HOH HOH . 
E 5 HOH A 10 710 19 HOH HOH . 
E 5 HOH A 11 711 20 HOH HOH . 
E 5 HOH A 12 712 22 HOH HOH . 
E 5 HOH A 13 713 25 HOH HOH . 
E 5 HOH A 14 714 28 HOH HOH . 
E 5 HOH A 15 715 29 HOH HOH . 
E 5 HOH A 16 716 33 HOH HOH . 
E 5 HOH A 17 717 34 HOH HOH . 
E 5 HOH A 18 718 35 HOH HOH . 
E 5 HOH A 19 719 37 HOH HOH . 
E 5 HOH A 20 720 39 HOH HOH . 
E 5 HOH A 21 721 44 HOH HOH . 
E 5 HOH A 22 722 45 HOH HOH . 
F 5 HOH B 1 601 1 HOH HOH . 
F 5 HOH B 2 602 6 HOH HOH . 
F 5 HOH B 3 603 7 HOH HOH . 
F 5 HOH B 4 604 8 HOH HOH . 
F 5 HOH B 5 605 9 HOH HOH . 
F 5 HOH B 6 606 13 HOH HOH . 
F 5 HOH B 7 607 16 HOH HOH . 
F 5 HOH B 8 608 17 HOH HOH . 
F 5 HOH B 9 609 18 HOH HOH . 
F 5 HOH B 10 610 21 HOH HOH . 
F 5 HOH B 11 611 23 HOH HOH . 
F 5 HOH B 12 612 24 HOH HOH . 
F 5 HOH B 13 613 26 HOH HOH . 
F 5 HOH B 14 614 27 HOH HOH . 
F 5 HOH B 15 615 30 HOH HOH . 
F 5 HOH B 16 616 31 HOH HOH . 
F 5 HOH B 17 617 32 HOH HOH . 
F 5 HOH B 18 618 36 HOH HOH . 
F 5 HOH B 19 619 38 HOH HOH . 
F 5 HOH B 20 620 40 HOH HOH . 
F 5 HOH B 21 621 41 HOH HOH . 
F 5 HOH B 22 622 42 HOH HOH . 
F 5 HOH B 23 623 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C00 494 . . . C 3 270.21 -24.019 19.649 1 45.96 ? C00 494 601 A 1 
HETATM 2 C C01 494 . . . C 3 271.088 -23.223 18.885 1 45.96 ? C01 494 601 A 1 
HETATM 3 C C02 494 . . . C 3 272.309 -22.777 19.429 1 45.96 ? C02 494 601 A 1 
HETATM 4 C C03 494 . . . C 3 272.64 -23.139 20.746 1 45.96 ? C03 494 601 A 1 
HETATM 5 C C04 494 . . . C 3 271.77 -23.946 21.533 1 45.96 ? C04 494 601 A 1 
HETATM 6 C C05 494 . . . C 3 270.516 -24.4 20.978 1 45.96 ? C05 494 601 A 1 
HETATM 7 CL CL7 494 . . . C 3 270.651 -22.797 17.281 1 45.96 ? CL7 494 601 A 1 
HETATM 8 O O0A 494 . . . C 3 272.174 -24.24 22.817 1 45.96 ? O0A 494 601 A 1 
HETATM 9 O O0B 494 . . . C 3 269.51 -25.181 21.54 1 45.96 ? O0B 494 601 A 1 
HETATM 10 C C0C 494 . . . C 3 272.006 -23.313 23.822 1 45.96 ? C0C 494 601 A 1 
HETATM 11 C C0D 494 . . . C 3 271.275 -22.111 23.645 1 45.96 ? C0D 494 601 A 1 
HETATM 12 C C0E 494 . . . C 3 271.135 -21.195 24.697 1 45.96 ? C0E 494 601 A 1 
HETATM 13 C C0F 494 . . . C 3 271.725 -21.478 25.947 1 45.96 ? C0F 494 601 A 1 
HETATM 14 C C0G 494 . . . C 3 272.465 -22.668 26.168 1 45.96 ? C0G 494 601 A 1 
HETATM 15 C C0H 494 . . . C 3 272.595 -23.585 25.082 1 45.96 ? C0H 494 601 A 1 
HETATM 16 CL CL0 494 . . . C 3 270.241 -19.752 24.426 1 45.96 ? CL0 494 601 A 1 
HETATM 17 C C0M 494 . . . C 3 273.027 -22.851 27.491 1 45.96 ? C0M 494 601 A 1 
HETATM 18 C C0O 494 . . . C 3 269.552 -25.717 22.859 1 45.96 ? C0O 494 601 A 1 
HETATM 19 C C0P 494 . . . C 3 268.546 -26.868 23.031 1 45.96 ? C0P 494 601 A 1 
HETATM 20 N N0S 494 . . . C 3 269.144 -28.157 22.635 1 45.96 ? N0S 494 601 A 1 
HETATM 21 C C0V 494 . . . C 3 268.854 -28.756 21.433 1 45.96 ? C0V 494 601 A 1 
HETATM 22 N N0W 494 . . . C 3 269.475 -29.94 21.204 1 45.96 ? N0W 494 601 A 1 
HETATM 23 C C0X 494 . . . C 3 270.346 -30.603 22.007 1 45.96 ? C0X 494 601 A 1 
HETATM 24 C C0Y 494 . . . C 3 270.634 -29.938 23.286 1 45.96 ? C0Y 494 601 A 1 
HETATM 25 C C0Z 494 . . . C 3 270.038 -28.749 23.567 1 45.96 ? C0Z 494 601 A 1 
HETATM 26 O O10 494 . . . C 3 268.086 -28.281 20.596 1 45.96 ? O10 494 601 A 1 
HETATM 27 O O12 494 . . . C 3 270.837 -31.68 21.665 1 45.96 ? O12 494 601 A 1 
HETATM 28 C C15 494 . . . C 3 273.854 -23.859 27.811 1 45.96 ? C15 494 601 A 1 
HETATM 29 C C17 494 . . . C 3 274.67 -23.832 28.98 1 45.96 ? C17 494 601 A 1 
HETATM 30 N N19 494 . . . C 3 275.33 -23.81 29.929 1 45.96 ? N19 494 601 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           30 
#