data_4H4O # _model_server_result.job_id L51xOoRUJS7yKdw3eG18Iw _model_server_result.datetime_utc '2025-01-11 02:48:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4H4O # _exptl.entry_id 4H4O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 411.358 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E)-3-(3-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-5-fluorophenyl)prop-2-enenitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.21 _cell.angle_gamma 90 _cell.entry_id 4H4O _cell.length_a 225.451 _cell.length_b 69.575 _cell.length_c 104.401 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H15 F2 N3 O4' _chem_comp.formula_weight 411.358 _chem_comp.id 506 _chem_comp.mon_nstd_flag . _chem_comp.name (2E)-3-(3-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-5-fluorophenyl)prop-2-enenitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FAD CAV 506 sing 1 n n CAV CAI 506 doub 2 n y CAV CAO 506 sing 3 n y CAI CAJ 506 sing 4 n y CAO CBA 506 doub 5 n y OAC CBC 506 doub 6 n n CAJ CAZ 506 doub 7 n y CBA CAZ 506 sing 8 n y CBA OAT 506 sing 9 n n NAS CBC 506 sing 10 n n NAS CBB 506 sing 11 n n CBC NBD 506 sing 12 n n CAZ OAU 506 sing 13 n n OAT CAQ 506 sing 14 n n OAB CBB 506 doub 15 n n CBB CAK 506 sing 16 n n NBD CAR 506 sing 17 n n NBD CAL 506 sing 18 n n OAU CAY 506 sing 19 n n CAQ CAR 506 sing 20 n n CAK CAL 506 doub 21 n n CAN CAY 506 doub 22 n y CAN CAW 506 sing 23 n y CAY CAP 506 sing 24 n y FAE CAW 506 sing 25 n n CAW CAM 506 doub 26 n y CAP CAX 506 doub 27 n y CAM CAX 506 sing 28 n y CAX CAH 506 sing 29 n n CAH CAG 506 doub 30 e n CAG CAF 506 sing 31 n n CAF NAA 506 trip 32 n n NAS H1 506 sing 33 n n CAK H2 506 sing 34 n n CAL H3 506 sing 35 n n CAR H4 506 sing 36 n n CAR H5 506 sing 37 n n CAQ H6 506 sing 38 n n CAQ H7 506 sing 39 n n CAO H8 506 sing 40 n n CAI H9 506 sing 41 n n CAJ H10 506 sing 42 n n CAP H11 506 sing 43 n n CAN H12 506 sing 44 n n CAM H13 506 sing 45 n n CAH H14 506 sing 46 n n CAG H15 506 sing 47 n n # _atom_sites.entry_id 4H4O _atom_sites.fract_transf_matrix[1][1] 0.004436 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001289 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 506 A 1 601 1 506 506 . D 4 HOH A 1 701 5 HOH HOH . D 4 HOH A 2 702 7 HOH HOH . D 4 HOH A 3 703 10 HOH HOH . D 4 HOH A 4 704 12 HOH HOH . D 4 HOH A 5 705 14 HOH HOH . D 4 HOH A 6 706 17 HOH HOH . D 4 HOH A 7 707 18 HOH HOH . D 4 HOH A 8 708 19 HOH HOH . D 4 HOH A 9 709 20 HOH HOH . D 4 HOH A 10 710 23 HOH HOH . D 4 HOH A 11 711 24 HOH HOH . D 4 HOH A 12 712 26 HOH HOH . D 4 HOH A 13 713 28 HOH HOH . D 4 HOH A 14 714 29 HOH HOH . D 4 HOH A 15 715 34 HOH HOH . D 4 HOH A 16 716 35 HOH HOH . D 4 HOH A 17 717 36 HOH HOH . D 4 HOH A 18 718 38 HOH HOH . D 4 HOH A 19 719 40 HOH HOH . D 4 HOH A 20 720 41 HOH HOH . D 4 HOH A 21 721 42 HOH HOH . D 4 HOH A 22 722 47 HOH HOH . E 4 HOH B 1 501 27 HOH HOH . E 4 HOH B 2 502 1 HOH HOH . E 4 HOH B 3 503 2 HOH HOH . E 4 HOH B 4 504 3 HOH HOH . E 4 HOH B 5 505 4 HOH HOH . E 4 HOH B 6 506 6 HOH HOH . E 4 HOH B 7 507 8 HOH HOH . E 4 HOH B 8 508 9 HOH HOH . E 4 HOH B 9 509 11 HOH HOH . E 4 HOH B 10 510 13 HOH HOH . E 4 HOH B 11 511 15 HOH HOH . E 4 HOH B 12 512 16 HOH HOH . E 4 HOH B 13 513 21 HOH HOH . E 4 HOH B 14 514 22 HOH HOH . E 4 HOH B 15 515 25 HOH HOH . E 4 HOH B 16 516 30 HOH HOH . E 4 HOH B 17 517 31 HOH HOH . E 4 HOH B 18 518 32 HOH HOH . E 4 HOH B 19 519 33 HOH HOH . E 4 HOH B 20 520 37 HOH HOH . E 4 HOH B 21 521 39 HOH HOH . E 4 HOH B 22 522 43 HOH HOH . E 4 HOH B 23 523 44 HOH HOH . E 4 HOH B 24 524 45 HOH HOH . E 4 HOH B 25 525 46 HOH HOH . E 4 HOH B 26 526 48 HOH HOH . E 4 HOH B 27 527 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC 506 . . . C 3 268.77 -28.458 20.614 1 133.01 ? OAC 506 601 A 1 HETATM 2 C CBC 506 . . . C 3 269.549 -28.942 21.434 1 143.14 ? CBC 506 601 A 1 HETATM 3 N NAS 506 . . . C 3 270.151 -30.187 21.176 1 160.92 ? NAS 506 601 A 1 HETATM 4 C CBB 506 . . . C 3 271.061 -30.825 22.055 1 160.25 ? CBB 506 601 A 1 HETATM 5 O OAB 506 . . . C 3 271.533 -31.916 21.741 1 150.08 ? OAB 506 601 A 1 HETATM 6 C CAK 506 . . . C 3 271.338 -30.087 23.288 1 151.46 ? CAK 506 601 A 1 HETATM 7 C CAL 506 . . . C 3 270.767 -28.888 23.551 1 145.94 ? CAL 506 601 A 1 HETATM 8 N NBD 506 . . . C 3 269.869 -28.273 22.666 1 139.26 ? NBD 506 601 A 1 HETATM 9 C CAR 506 . . . C 3 269.252 -26.948 22.981 1 134.52 ? CAR 506 601 A 1 HETATM 10 C CAQ 506 . . . C 3 270.236 -25.74 22.913 1 147.85 ? CAQ 506 601 A 1 HETATM 11 O OAT 506 . . . C 3 270.062 -25.105 21.605 1 135.3 ? OAT 506 601 A 1 HETATM 12 C CBA 506 . . . C 3 271.122 -24.446 20.956 1 126.37 ? CBA 506 601 A 1 HETATM 13 C CAO 506 . . . C 3 270.878 -24.141 19.609 1 138.48 ? CAO 506 601 A 1 HETATM 14 C CAV 506 . . . C 3 271.817 -23.476 18.81 1 137.41 ? CAV 506 601 A 1 HETATM 15 F FAD 506 . . . C 3 271.54 -23.213 17.552 1 128.83 ? FAD 506 601 A 1 HETATM 16 C CAI 506 . . . C 3 273.049 -23.089 19.336 1 125.63 ? CAI 506 601 A 1 HETATM 17 C CAJ 506 . . . C 3 273.31 -23.376 20.66 1 132.69 ? CAJ 506 601 A 1 HETATM 18 C CAZ 506 . . . C 3 272.399 -24.041 21.523 1 128.99 ? CAZ 506 601 A 1 HETATM 19 O OAU 506 . . . C 3 272.785 -24.286 22.859 1 137.96 ? OAU 506 601 A 1 HETATM 20 C CAY 506 . . . C 3 272.619 -23.327 23.854 1 144.21 ? CAY 506 601 A 1 HETATM 21 C CAP 506 . . . C 3 273.326 -23.461 25.061 1 145.7 ? CAP 506 601 A 1 HETATM 22 C CAN 506 . . . C 3 271.753 -22.241 23.672 1 149.99 ? CAN 506 601 A 1 HETATM 23 C CAW 506 . . . C 3 271.643 -21.323 24.726 1 149.95 ? CAW 506 601 A 1 HETATM 24 F FAE 506 . . . C 3 270.823 -20.284 24.557 1 146.71 ? FAE 506 601 A 1 HETATM 25 C CAM 506 . . . C 3 272.349 -21.449 25.939 1 149.61 ? CAM 506 601 A 1 HETATM 26 C CAX 506 . . . C 3 273.207 -22.536 26.118 1 149.11 ? CAX 506 601 A 1 HETATM 27 C CAH 506 . . . C 3 273.982 -22.66 27.396 1 148 ? CAH 506 601 A 1 HETATM 28 C CAG 506 . . . C 3 274.156 -23.767 28.16 1 151.16 ? CAG 506 601 A 1 HETATM 29 C CAF 506 . . . C 3 275.058 -23.968 29.229 1 152.81 ? CAF 506 601 A 1 HETATM 30 N NAA 506 . . . C 3 275.796 -24.124 30.141 1 153.44 ? NAA 506 601 A 1 # _model_server_stats.io_time_ms 118 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #