data_4H50 # _model_server_result.job_id Mu1-Ds30ZxVWiDtSExKRwg _model_server_result.datetime_utc '2024-10-19 19:31:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h50 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4H50 # _exptl.entry_id 4H50 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4H50 _cell.length_a 98.021 _cell.length_b 98.021 _cell.length_c 171.546 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H50 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -49.0105 -84.888676 -28.591 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 4H50 _atom_sites.fract_transf_matrix[1][1] 0.010202 _atom_sites.fract_transf_matrix[1][2] 0.00589 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01178 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 501 449 FAD FAD . C 3 NAP A 1 502 500 NAP NAP . D 4 FMT A 1 503 1 FMT FMT . E 4 FMT A 1 504 2 FMT FMT . F 4 FMT A 1 505 3 FMT FMT . G 4 FMT A 1 506 4 FMT FMT . H 4 FMT A 1 507 5 FMT FMT . I 5 GOL A 1 508 1 GOL GOL . J 6 HOH A 1 601 2 HOH HOH . J 6 HOH A 2 602 4 HOH HOH . J 6 HOH A 3 603 5 HOH HOH . J 6 HOH A 4 604 6 HOH HOH . J 6 HOH A 5 605 7 HOH HOH . J 6 HOH A 6 606 8 HOH HOH . J 6 HOH A 7 607 9 HOH HOH . J 6 HOH A 8 608 10 HOH HOH . J 6 HOH A 9 609 12 HOH HOH . J 6 HOH A 10 610 13 HOH HOH . J 6 HOH A 11 611 14 HOH HOH . J 6 HOH A 12 612 15 HOH HOH . J 6 HOH A 13 613 16 HOH HOH . J 6 HOH A 14 614 18 HOH HOH . J 6 HOH A 15 615 19 HOH HOH . J 6 HOH A 16 616 20 HOH HOH . J 6 HOH A 17 617 21 HOH HOH . J 6 HOH A 18 618 22 HOH HOH . J 6 HOH A 19 619 23 HOH HOH . J 6 HOH A 20 620 24 HOH HOH . J 6 HOH A 21 621 25 HOH HOH . J 6 HOH A 22 622 26 HOH HOH . J 6 HOH A 23 623 27 HOH HOH . J 6 HOH A 24 624 28 HOH HOH . J 6 HOH A 25 625 29 HOH HOH . J 6 HOH A 26 626 30 HOH HOH . J 6 HOH A 27 627 31 HOH HOH . J 6 HOH A 28 628 32 HOH HOH . J 6 HOH A 29 629 35 HOH HOH . J 6 HOH A 30 630 36 HOH HOH . J 6 HOH A 31 631 37 HOH HOH . J 6 HOH A 32 632 39 HOH HOH . J 6 HOH A 33 633 40 HOH HOH . J 6 HOH A 34 634 41 HOH HOH . J 6 HOH A 35 635 42 HOH HOH . J 6 HOH A 36 636 43 HOH HOH . J 6 HOH A 37 637 44 HOH HOH . J 6 HOH A 38 638 45 HOH HOH . J 6 HOH A 39 639 46 HOH HOH . J 6 HOH A 40 640 48 HOH HOH . J 6 HOH A 41 641 50 HOH HOH . J 6 HOH A 42 642 51 HOH HOH . J 6 HOH A 43 643 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 -36.601 -12.675 -8.911 1 10.75 ? PA FAD 501 A 1 HETATM 2 O O1A FAD . . . B 2 -35.863 -13.517 -7.842 1 19.09 ? O1A FAD 501 A 1 HETATM 3 O O2A FAD . . . B 2 -35.669 -11.651 -9.413 1 12.57 ? O2A FAD 501 A 1 HETATM 4 O O5B FAD . . . B 2 -37.852 -11.915 -8.315 1 15.49 ? O5B FAD 501 A 1 HETATM 5 C C5B FAD . . . B 2 -38.536 -12.411 -7.206 1 12.94 ? C5B FAD 501 A 1 HETATM 6 C C4B FAD . . . B 2 -38.759 -11.471 -6.129 1 12.94 ? C4B FAD 501 A 1 HETATM 7 O O4B FAD . . . B 2 -39.963 -11.776 -5.487 1 11.52 ? O4B FAD 501 A 1 HETATM 8 C C3B FAD . . . B 2 -37.656 -11.639 -5.142 1 13.63 ? C3B FAD 501 A 1 HETATM 9 O O3B FAD . . . B 2 -37.232 -10.388 -4.659 1 12.76 ? O3B FAD 501 A 1 HETATM 10 C C2B FAD . . . B 2 -38.258 -12.361 -4.103 1 13.66 ? C2B FAD 501 A 1 HETATM 11 O O2B FAD . . . B 2 -37.663 -12.069 -2.842 1 12.04 ? O2B FAD 501 A 1 HETATM 12 C C1B FAD . . . B 2 -39.642 -11.876 -4.13 1 13.85 ? C1B FAD 501 A 1 HETATM 13 N N9A FAD . . . B 2 -40.576 -12.722 -3.347 1 13.85 ? N9A FAD 501 A 1 HETATM 14 C C8A FAD . . . B 2 -40.504 -14.054 -3.2 1 13.43 ? C8A FAD 501 A 1 HETATM 15 N N7A FAD . . . B 2 -41.521 -14.462 -2.419 1 14.13 ? N7A FAD 501 A 1 HETATM 16 C C5A FAD . . . B 2 -42.244 -13.391 -2.043 1 13.4 ? C5A FAD 501 A 1 HETATM 17 C C6A FAD . . . B 2 -43.38 -13.202 -1.252 1 14.04 ? C6A FAD 501 A 1 HETATM 18 N N6A FAD . . . B 2 -44.077 -14.352 -0.6 1 11.05 ? N6A FAD 501 A 1 HETATM 19 N N1A FAD . . . B 2 -43.834 -11.952 -1.093 1 16.94 ? N1A FAD 501 A 1 HETATM 20 C C2A FAD . . . B 2 -43.235 -10.902 -1.679 1 13.27 ? C2A FAD 501 A 1 HETATM 21 N N3A FAD . . . B 2 -42.15 -11.057 -2.434 1 12.28 ? N3A FAD 501 A 1 HETATM 22 C C4A FAD . . . B 2 -41.638 -12.274 -2.632 1 13.02 ? C4A FAD 501 A 1 HETATM 23 N N1 FAD . . . B 2 -29.278 -14.122 -15.872 1 21.31 ? N1 FAD 501 A 1 HETATM 24 C C2 FAD . . . B 2 -28.715 -14.28 -17.094 1 23.13 ? C2 FAD 501 A 1 HETATM 25 O O2 FAD . . . B 2 -29.473 -14.774 -18.157 1 17.82 ? O2 FAD 501 A 1 HETATM 26 N N3 FAD . . . B 2 -27.421 -13.969 -17.321 1 27.91 ? N3 FAD 501 A 1 HETATM 27 C C4 FAD . . . B 2 -26.616 -13.665 -16.284 1 27.68 ? C4 FAD 501 A 1 HETATM 28 O O4 FAD . . . B 2 -25.227 -13.52 -16.501 1 28.01 ? O4 FAD 501 A 1 HETATM 29 C C4X FAD . . . B 2 -27.145 -13.493 -14.99 1 23.58 ? C4X FAD 501 A 1 HETATM 30 N N5 FAD . . . B 2 -26.428 -12.995 -13.969 1 19.31 ? N5 FAD 501 A 1 HETATM 31 C C5X FAD . . . B 2 -26.968 -13.055 -12.71 1 17.7 ? C5X FAD 501 A 1 HETATM 32 C C6 FAD . . . B 2 -26.153 -12.79 -11.615 1 18.17 ? C6 FAD 501 A 1 HETATM 33 C C7 FAD . . . B 2 -26.663 -12.848 -10.323 1 17.63 ? C7 FAD 501 A 1 HETATM 34 C C7M FAD . . . B 2 -25.765 -12.576 -9.198 1 20.84 ? C7M FAD 501 A 1 HETATM 35 C C8 FAD . . . B 2 -28.006 -13.162 -10.12 1 18.72 ? C8 FAD 501 A 1 HETATM 36 C C8M FAD . . . B 2 -28.567 -13.221 -8.743 1 18.45 ? C8M FAD 501 A 1 HETATM 37 C C9 FAD . . . B 2 -28.828 -13.414 -11.213 1 19.89 ? C9 FAD 501 A 1 HETATM 38 C C9A FAD . . . B 2 -28.307 -13.363 -12.516 1 17.94 ? C9A FAD 501 A 1 HETATM 39 N N10 FAD . . . B 2 -29.091 -13.592 -13.6 1 21.25 ? N10 FAD 501 A 1 HETATM 40 C C10 FAD . . . B 2 -28.495 -13.859 -14.794 1 25.64 ? C10 FAD 501 A 1 HETATM 41 C C1' FAD . . . B 2 -30.281 -12.806 -13.693 1 19.33 ? C1' FAD 501 A 1 HETATM 42 C C2' FAD . . . B 2 -31.61 -13.57 -13.646 1 21.69 ? C2' FAD 501 A 1 HETATM 43 O O2' FAD . . . B 2 -31.774 -14.569 -14.367 1 22.3 ? O2' FAD 501 A 1 HETATM 44 C C3' FAD . . . B 2 -32.806 -12.801 -13.132 1 19.93 ? C3' FAD 501 A 1 HETATM 45 O O3' FAD . . . B 2 -32.487 -12.176 -11.97 1 19.37 ? O3' FAD 501 A 1 HETATM 46 C C4' FAD . . . B 2 -33.976 -13.718 -12.858 1 15.7 ? C4' FAD 501 A 1 HETATM 47 O O4' FAD . . . B 2 -34.234 -14.53 -13.977 1 16.07 ? O4' FAD 501 A 1 HETATM 48 C C5' FAD . . . B 2 -35.181 -12.876 -12.438 1 11.62 ? C5' FAD 501 A 1 HETATM 49 O O5' FAD . . . B 2 -36.429 -13.56 -12.506 1 16.83 ? O5' FAD 501 A 1 HETATM 50 P P FAD . . . B 2 -37.572 -13.278 -11.463 1 14.49 ? P FAD 501 A 1 HETATM 51 O O1P FAD . . . B 2 -37.997 -11.829 -11.558 1 12.01 ? O1P FAD 501 A 1 HETATM 52 O O2P FAD . . . B 2 -38.722 -14.213 -11.875 1 15.87 ? O2P FAD 501 A 1 HETATM 53 O O3P FAD . . . B 2 -37.06 -13.666 -10.068 1 15.12 ? O3P FAD 501 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #