data_4H50 # _model_server_result.job_id tfyK-ZIBmLXp9onbqOw7Ew _model_server_result.datetime_utc '2025-03-04 09:10:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h50 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4H50 # _exptl.entry_id 4H50 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4H50 _cell.length_a 98.021 _cell.length_b 98.021 _cell.length_c 171.546 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H50 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -49.0105 -84.888676 -28.591 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 345 n n PA O2A NAP sing 346 n n PA O5B NAP sing 347 n n PA O3 NAP sing 348 n n O2A HOA2 NAP sing 349 n n O5B C5B NAP sing 350 n n C5B C4B NAP sing 351 n n C5B H51A NAP sing 352 n n C5B H52A NAP sing 353 n n C4B O4B NAP sing 354 n n C4B C3B NAP sing 355 n n C4B H4B NAP sing 356 n n O4B C1B NAP sing 357 n n C3B O3B NAP sing 358 n n C3B C2B NAP sing 359 n n C3B H3B NAP sing 360 n n O3B HO3A NAP sing 361 n n C2B O2B NAP sing 362 n n C2B C1B NAP sing 363 n n C2B H2B NAP sing 364 n n O2B P2B NAP sing 365 n n C1B N9A NAP sing 366 n n C1B H1B NAP sing 367 n n N9A C8A NAP sing 368 n y N9A C4A NAP sing 369 n y C8A N7A NAP doub 370 n y C8A H8A NAP sing 371 n n N7A C5A NAP sing 372 n y C5A C6A NAP sing 373 n y C5A C4A NAP doub 374 n y C6A N6A NAP sing 375 n n C6A N1A NAP doub 376 n y N6A H61A NAP sing 377 n n N6A H62A NAP sing 378 n n N1A C2A NAP sing 379 n y C2A N3A NAP doub 380 n y C2A H2A NAP sing 381 n n N3A C4A NAP sing 382 n y O3 PN NAP sing 383 n n PN O1N NAP doub 384 n n PN O2N NAP sing 385 n n PN O5D NAP sing 386 n n O5D C5D NAP sing 387 n n C5D C4D NAP sing 388 n n C5D H51N NAP sing 389 n n C5D H52N NAP sing 390 n n C4D O4D NAP sing 391 n n C4D C3D NAP sing 392 n n C4D H4D NAP sing 393 n n O4D C1D NAP sing 394 n n C3D O3D NAP sing 395 n n C3D C2D NAP sing 396 n n C3D H3D NAP sing 397 n n O3D HO3N NAP sing 398 n n C2D O2D NAP sing 399 n n C2D C1D NAP sing 400 n n C2D H2D NAP sing 401 n n O2D HO2N NAP sing 402 n n C1D N1N NAP sing 403 n n C1D H1D NAP sing 404 n n N1N C2N NAP sing 405 n y N1N C6N NAP doub 406 n y C2N C3N NAP doub 407 n y C2N H2N NAP sing 408 n n C3N C7N NAP sing 409 n n C3N C4N NAP sing 410 n y C7N O7N NAP doub 411 n n C7N N7N NAP sing 412 n n N7N H71N NAP sing 413 n n N7N H72N NAP sing 414 n n C4N C5N NAP doub 415 n y C4N H4N NAP sing 416 n n C5N C6N NAP sing 417 n y C5N H5N NAP sing 418 n n C6N H6N NAP sing 419 n n P2B O1X NAP doub 420 n n P2B O2X NAP sing 421 n n P2B O3X NAP sing 422 n n O2X HOP2 NAP sing 423 n n O3X HOP3 NAP sing 424 n n # _atom_sites.entry_id 4H50 _atom_sites.fract_transf_matrix[1][1] 0.010202 _atom_sites.fract_transf_matrix[1][2] 0.00589 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01178 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 501 449 FAD FAD . C 3 NAP A 1 502 500 NAP NAP . D 4 FMT A 1 503 1 FMT FMT . E 4 FMT A 1 504 2 FMT FMT . F 4 FMT A 1 505 3 FMT FMT . G 4 FMT A 1 506 4 FMT FMT . H 4 FMT A 1 507 5 FMT FMT . I 5 GOL A 1 508 1 GOL GOL . J 6 HOH A 1 601 2 HOH HOH . J 6 HOH A 2 602 4 HOH HOH . J 6 HOH A 3 603 5 HOH HOH . J 6 HOH A 4 604 6 HOH HOH . J 6 HOH A 5 605 7 HOH HOH . J 6 HOH A 6 606 8 HOH HOH . J 6 HOH A 7 607 9 HOH HOH . J 6 HOH A 8 608 10 HOH HOH . J 6 HOH A 9 609 12 HOH HOH . J 6 HOH A 10 610 13 HOH HOH . J 6 HOH A 11 611 14 HOH HOH . J 6 HOH A 12 612 15 HOH HOH . J 6 HOH A 13 613 16 HOH HOH . J 6 HOH A 14 614 18 HOH HOH . J 6 HOH A 15 615 19 HOH HOH . J 6 HOH A 16 616 20 HOH HOH . J 6 HOH A 17 617 21 HOH HOH . J 6 HOH A 18 618 22 HOH HOH . J 6 HOH A 19 619 23 HOH HOH . J 6 HOH A 20 620 24 HOH HOH . J 6 HOH A 21 621 25 HOH HOH . J 6 HOH A 22 622 26 HOH HOH . J 6 HOH A 23 623 27 HOH HOH . J 6 HOH A 24 624 28 HOH HOH . J 6 HOH A 25 625 29 HOH HOH . J 6 HOH A 26 626 30 HOH HOH . J 6 HOH A 27 627 31 HOH HOH . J 6 HOH A 28 628 32 HOH HOH . J 6 HOH A 29 629 35 HOH HOH . J 6 HOH A 30 630 36 HOH HOH . J 6 HOH A 31 631 37 HOH HOH . J 6 HOH A 32 632 39 HOH HOH . J 6 HOH A 33 633 40 HOH HOH . J 6 HOH A 34 634 41 HOH HOH . J 6 HOH A 35 635 42 HOH HOH . J 6 HOH A 36 636 43 HOH HOH . J 6 HOH A 37 637 44 HOH HOH . J 6 HOH A 38 638 45 HOH HOH . J 6 HOH A 39 639 46 HOH HOH . J 6 HOH A 40 640 48 HOH HOH . J 6 HOH A 41 641 50 HOH HOH . J 6 HOH A 42 642 51 HOH HOH . J 6 HOH A 43 643 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 -26.014 -23.433 -11.162 0.81 51.1 ? PA NAP 502 A 1 HETATM 2 O O1A NAP . . . C 3 -26.01 -22.797 -12.53 0.81 41.63 ? O1A NAP 502 A 1 HETATM 3 O O2A NAP . . . C 3 -27.046 -24.468 -11.13 0.81 36.21 ? O2A NAP 502 A 1 HETATM 4 O O5B NAP . . . C 3 -24.607 -24.083 -10.881 0.81 38.69 ? O5B NAP 502 A 1 HETATM 5 C C5B NAP . . . C 3 -24.237 -24.645 -9.568 0.81 37.25 ? C5B NAP 502 A 1 HETATM 6 C C4B NAP . . . C 3 -23.174 -25.586 -9.524 0.81 41.48 ? C4B NAP 502 A 1 HETATM 7 O O4B NAP . . . C 3 -23.112 -26.214 -8.181 0.81 40.08 ? O4B NAP 502 A 1 HETATM 8 C C3B NAP . . . C 3 -23.418 -26.67 -10.508 0.81 50.17 ? C3B NAP 502 A 1 HETATM 9 O O3B NAP . . . C 3 -22.289 -26.96 -11.187 0.81 49.38 ? O3B NAP 502 A 1 HETATM 10 C C2B NAP . . . C 3 -23.85 -27.84 -9.727 0.81 50.19 ? C2B NAP 502 A 1 HETATM 11 O O2B NAP . . . C 3 -23.307 -28.945 -10.246 0.81 52.78 ? O2B NAP 502 A 1 HETATM 12 C C1B NAP . . . C 3 -23.325 -27.597 -8.331 0.81 48.32 ? C1B NAP 502 A 1 HETATM 13 N N9A NAP . . . C 3 -24.15 -28.191 -7.288 0.81 48.89 ? N9A NAP 502 A 1 HETATM 14 C C8A NAP . . . C 3 -25.479 -28.429 -7.329 0.81 44.77 ? C8A NAP 502 A 1 HETATM 15 N N7A NAP . . . C 3 -25.869 -28.997 -6.169 0.81 41.95 ? N7A NAP 502 A 1 HETATM 16 C C5A NAP . . . C 3 -24.782 -29.139 -5.363 0.81 45.04 ? C5A NAP 502 A 1 HETATM 17 C C6A NAP . . . C 3 -24.562 -29.652 -4.07 0.81 44.32 ? C6A NAP 502 A 1 HETATM 18 N N6A NAP . . . C 3 -25.68 -30.198 -3.285 0.81 40.06 ? N6A NAP 502 A 1 HETATM 19 N N1A NAP . . . C 3 -23.303 -29.632 -3.565 0.81 41.97 ? N1A NAP 502 A 1 HETATM 20 C C2A NAP . . . C 3 -22.282 -29.131 -4.279 0.81 42.66 ? C2A NAP 502 A 1 HETATM 21 N N3A NAP . . . C 3 -22.451 -28.633 -5.518 0.81 41.81 ? N3A NAP 502 A 1 HETATM 22 C C4A NAP . . . C 3 -23.69 -28.626 -6.079 0.81 44.97 ? C4A NAP 502 A 1 HETATM 23 O O3 NAP . . . C 3 -26.302 -22.372 -10.022 0.81 45.67 ? O3 NAP 502 A 1 HETATM 24 P PN NAP . . . C 3 -25.94 -20.836 -9.947 0.81 41.77 ? PN NAP 502 A 1 HETATM 25 O O1N NAP . . . C 3 -24.533 -20.526 -10.506 0.81 36.66 ? O1N NAP 502 A 1 HETATM 26 O O2N NAP . . . C 3 -25.986 -20.477 -8.427 0.81 28.32 ? O2N NAP 502 A 1 HETATM 27 O O5D NAP . . . C 3 -27.011 -19.979 -10.731 0.81 30.64 ? O5D NAP 502 A 1 HETATM 28 P P2B NAP . . . C 3 -24.193 -30.17 -10.73 0.81 59.51 ? P2B NAP 502 A 1 HETATM 29 O O1X NAP . . . C 3 -23.363 -31.419 -10.636 0.81 56.93 ? O1X NAP 502 A 1 HETATM 30 O O2X NAP . . . C 3 -25.496 -30.327 -9.836 0.81 51.39 ? O2X NAP 502 A 1 HETATM 31 O O3X NAP . . . C 3 -24.635 -29.96 -12.15 0.81 50.1 ? O3X NAP 502 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #