data_4H5C # _model_server_result.job_id ydNJlcdyprjR38gWax5pEA _model_server_result.datetime_utc '2024-11-05 12:34:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h5c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4H5C # _exptl.entry_id 4H5C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.276 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[({4-[4-(propan-2-yloxy)phenyl]pyridin-2-yl}amino)methanediyl]bis(phosphonic acid)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H5C _cell.length_a 110.979 _cell.length_b 110.979 _cell.length_c 66.785 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H5C _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 125 F ASP 103 1_555 D MG MG . F MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc2 A OD1 ASP 125 F ASP 103 1_555 E MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc3 A OD2 ASP 129 F ASP 107 1_555 D MG MG . F MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc4 A OD2 ASP 129 F ASP 107 1_555 E MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc5 A OD2 ASP 265 F ASP 243 1_555 F MG MG . F MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc6 B O3 YS4 . F YS4 401 1_555 D MG MG . F MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc7 B O6 YS4 . F YS4 401 1_555 E MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc8 B O3 YS4 . F YS4 401 1_555 E MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc9 B O5 YS4 . F YS4 401 1_555 F MG MG . F MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc10 B O4 YS4 . F YS4 401 1_555 F MG MG . F MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc11 D MG MG . F MG 403 1_555 G O HOH . F HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc12 D MG MG . F MG 403 1_555 G O HOH . F HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc13 D MG MG . F MG 403 1_555 G O HOH . F HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc14 E MG MG . F MG 404 1_555 G O HOH . F HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc15 E MG MG . F MG 404 1_555 G O HOH . F HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc16 F MG MG . F MG 405 1_555 G O HOH . F HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc17 F MG MG . F MG 405 1_555 G O HOH . F HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc18 F MG MG . F MG 405 1_555 G O HOH . F HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? # _chem_comp.formula 'C15 H20 N2 O7 P2' _chem_comp.formula_weight 402.276 _chem_comp.id YS4 _chem_comp.mon_nstd_flag . _chem_comp.name '[({4-[4-(propan-2-yloxy)phenyl]pyridin-2-yl}amino)methanediyl]bis(phosphonic acid)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 P1 YS4 doub 380 n n O2 P1 YS4 sing 381 n n P1 O3 YS4 sing 382 n n P1 C13 YS4 sing 383 n n C14 N2 YS4 doub 384 n y C14 C15 YS4 sing 385 n y N2 C12 YS4 sing 386 n y C15 C10 YS4 doub 387 n y C13 N1 YS4 sing 388 n n C13 P2 YS4 sing 389 n n O5 P2 YS4 doub 390 n n C6 C5 YS4 doub 391 n y C6 C9 YS4 sing 392 n y C12 N1 YS4 sing 393 n n C12 C11 YS4 doub 394 n y C10 C11 YS4 sing 395 n y C10 C9 YS4 sing 396 n n C5 C4 YS4 sing 397 n y P2 O6 YS4 sing 398 n n P2 O7 YS4 sing 399 n n C9 C8 YS4 doub 400 n y C4 O1 YS4 sing 401 n n C4 C7 YS4 doub 402 n y C8 C7 YS4 sing 403 n y O1 C2 YS4 sing 404 n n C1 C2 YS4 sing 405 n n C2 C3 YS4 sing 406 n n O6 H1 YS4 sing 407 n n O7 H2 YS4 sing 408 n n C13 H3 YS4 sing 409 n n O3 H4 YS4 sing 410 n n O2 H5 YS4 sing 411 n n N1 H6 YS4 sing 412 n n C11 H7 YS4 sing 413 n n C14 H8 YS4 sing 414 n n C15 H9 YS4 sing 415 n n C6 H10 YS4 sing 416 n n C5 H11 YS4 sing 417 n n C8 H12 YS4 sing 418 n n C7 H13 YS4 sing 419 n n C2 H14 YS4 sing 420 n n C1 H15 YS4 sing 421 n n C1 H16 YS4 sing 422 n n C1 H17 YS4 sing 423 n n C3 H18 YS4 sing 424 n n C3 H19 YS4 sing 425 n n C3 H20 YS4 sing 426 n n # _atom_sites.entry_id 4H5C _atom_sites.fract_transf_matrix[1][1] 0.009011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YS4 F 1 401 1 YS4 YS4 . C 3 PO4 F 1 402 1 PO4 PO4 . D 4 MG F 1 403 1 MG MG . E 4 MG F 1 404 1 MG MG . F 4 MG F 1 405 1 MG MG . G 5 HOH F 1 501 1 HOH HOH . G 5 HOH F 2 502 2 HOH HOH . G 5 HOH F 3 503 3 HOH HOH . G 5 HOH F 4 504 4 HOH HOH . G 5 HOH F 5 505 5 HOH HOH . G 5 HOH F 6 506 6 HOH HOH . G 5 HOH F 7 507 7 HOH HOH . G 5 HOH F 8 508 8 HOH HOH . G 5 HOH F 9 509 9 HOH HOH . G 5 HOH F 10 510 10 HOH HOH . G 5 HOH F 11 511 11 HOH HOH . G 5 HOH F 12 512 12 HOH HOH . G 5 HOH F 13 513 13 HOH HOH . G 5 HOH F 14 514 14 HOH HOH . G 5 HOH F 15 515 15 HOH HOH . G 5 HOH F 16 516 16 HOH HOH . G 5 HOH F 17 517 17 HOH HOH . G 5 HOH F 18 518 18 HOH HOH . G 5 HOH F 19 519 19 HOH HOH . G 5 HOH F 20 520 20 HOH HOH . G 5 HOH F 21 521 21 HOH HOH . G 5 HOH F 22 522 22 HOH HOH . G 5 HOH F 23 523 23 HOH HOH . G 5 HOH F 24 524 24 HOH HOH . G 5 HOH F 25 525 25 HOH HOH . G 5 HOH F 26 526 26 HOH HOH . G 5 HOH F 27 527 27 HOH HOH . G 5 HOH F 28 528 28 HOH HOH . G 5 HOH F 29 529 29 HOH HOH . G 5 HOH F 30 530 30 HOH HOH . G 5 HOH F 31 531 31 HOH HOH . G 5 HOH F 32 532 32 HOH HOH . G 5 HOH F 33 533 33 HOH HOH . G 5 HOH F 34 534 34 HOH HOH . G 5 HOH F 35 535 35 HOH HOH . G 5 HOH F 36 536 36 HOH HOH . G 5 HOH F 37 537 37 HOH HOH . G 5 HOH F 38 538 38 HOH HOH . G 5 HOH F 39 539 39 HOH HOH . G 5 HOH F 40 540 40 HOH HOH . G 5 HOH F 41 541 41 HOH HOH . G 5 HOH F 42 542 42 HOH HOH . G 5 HOH F 43 543 43 HOH HOH . G 5 HOH F 44 544 44 HOH HOH . G 5 HOH F 45 545 45 HOH HOH . G 5 HOH F 46 546 46 HOH HOH . G 5 HOH F 47 547 47 HOH HOH . G 5 HOH F 48 548 48 HOH HOH . G 5 HOH F 49 549 49 HOH HOH . G 5 HOH F 50 550 50 HOH HOH . G 5 HOH F 51 551 51 HOH HOH . G 5 HOH F 52 552 52 HOH HOH . G 5 HOH F 53 553 53 HOH HOH . G 5 HOH F 54 554 54 HOH HOH . G 5 HOH F 55 555 55 HOH HOH . G 5 HOH F 56 556 56 HOH HOH . G 5 HOH F 57 557 57 HOH HOH . G 5 HOH F 58 558 58 HOH HOH . G 5 HOH F 59 559 59 HOH HOH . G 5 HOH F 60 560 60 HOH HOH . G 5 HOH F 61 561 61 HOH HOH . G 5 HOH F 62 562 62 HOH HOH . G 5 HOH F 63 563 63 HOH HOH . G 5 HOH F 64 564 64 HOH HOH . G 5 HOH F 65 565 65 HOH HOH . G 5 HOH F 66 566 66 HOH HOH . G 5 HOH F 67 567 67 HOH HOH . G 5 HOH F 68 568 68 HOH HOH . G 5 HOH F 69 569 69 HOH HOH . G 5 HOH F 70 570 70 HOH HOH . G 5 HOH F 71 571 71 HOH HOH . G 5 HOH F 72 572 72 HOH HOH . G 5 HOH F 73 573 73 HOH HOH . G 5 HOH F 74 574 74 HOH HOH . G 5 HOH F 75 575 75 HOH HOH . G 5 HOH F 76 576 76 HOH HOH . G 5 HOH F 77 577 77 HOH HOH . G 5 HOH F 78 578 78 HOH HOH . G 5 HOH F 79 579 79 HOH HOH . G 5 HOH F 80 580 80 HOH HOH . G 5 HOH F 81 581 81 HOH HOH . G 5 HOH F 82 582 82 HOH HOH . G 5 HOH F 83 583 83 HOH HOH . G 5 HOH F 84 584 84 HOH HOH . G 5 HOH F 85 585 85 HOH HOH . G 5 HOH F 86 586 86 HOH HOH . G 5 HOH F 87 587 87 HOH HOH . G 5 HOH F 88 588 88 HOH HOH . G 5 HOH F 89 589 89 HOH HOH . G 5 HOH F 90 590 90 HOH HOH . G 5 HOH F 91 591 91 HOH HOH . G 5 HOH F 92 592 92 HOH HOH . G 5 HOH F 93 593 93 HOH HOH . G 5 HOH F 94 594 94 HOH HOH . G 5 HOH F 95 595 95 HOH HOH . G 5 HOH F 96 596 96 HOH HOH . G 5 HOH F 97 597 97 HOH HOH . G 5 HOH F 98 598 98 HOH HOH . G 5 HOH F 99 599 99 HOH HOH . G 5 HOH F 100 600 100 HOH HOH . G 5 HOH F 101 601 101 HOH HOH . G 5 HOH F 102 602 102 HOH HOH . G 5 HOH F 103 603 103 HOH HOH . G 5 HOH F 104 604 104 HOH HOH . G 5 HOH F 105 605 105 HOH HOH . G 5 HOH F 106 606 106 HOH HOH . G 5 HOH F 107 607 107 HOH HOH . G 5 HOH F 108 608 108 HOH HOH . G 5 HOH F 109 609 109 HOH HOH . G 5 HOH F 110 610 110 HOH HOH . G 5 HOH F 111 611 111 HOH HOH . G 5 HOH F 112 612 112 HOH HOH . G 5 HOH F 113 613 113 HOH HOH . G 5 HOH F 114 614 114 HOH HOH . G 5 HOH F 115 615 115 HOH HOH . G 5 HOH F 116 616 116 HOH HOH . G 5 HOH F 117 617 117 HOH HOH . G 5 HOH F 118 618 118 HOH HOH . G 5 HOH F 119 619 119 HOH HOH . G 5 HOH F 120 620 120 HOH HOH . G 5 HOH F 121 621 121 HOH HOH . G 5 HOH F 122 622 122 HOH HOH . G 5 HOH F 123 623 123 HOH HOH . G 5 HOH F 124 624 124 HOH HOH . G 5 HOH F 125 625 125 HOH HOH . G 5 HOH F 126 626 126 HOH HOH . G 5 HOH F 127 627 127 HOH HOH . G 5 HOH F 128 628 128 HOH HOH . G 5 HOH F 129 629 129 HOH HOH . G 5 HOH F 130 630 130 HOH HOH . G 5 HOH F 131 631 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 YS4 . . . B 2 14.77 36.456 -8.054 1 33.81 ? O5 YS4 401 F 1 HETATM 2 P P2 YS4 . . . B 2 14.998 35.252 -7.158 1 31.7 ? P2 YS4 401 F 1 HETATM 3 O O6 YS4 . . . B 2 16.428 35.273 -6.661 1 32.21 ? O6 YS4 401 F 1 HETATM 4 O O7 YS4 . . . B 2 14.032 35.199 -5.972 1 31.76 ? O7 YS4 401 F 1 HETATM 5 C C13 YS4 . . . B 2 14.834 33.722 -8.117 1 35.94 ? C13 YS4 401 F 1 HETATM 6 P P1 YS4 . . . B 2 16.06 33.748 -9.516 1 31.77 ? P1 YS4 401 F 1 HETATM 7 O O3 YS4 . . . B 2 17.549 33.558 -8.919 1 30.72 ? O3 YS4 401 F 1 HETATM 8 O O2 YS4 . . . B 2 15.928 32.454 -10.419 1 29.88 ? O2 YS4 401 F 1 HETATM 9 O O4 YS4 . . . B 2 15.961 35.018 -10.353 1 35.72 ? O4 YS4 401 F 1 HETATM 10 N N1 YS4 . . . B 2 15.061 32.55 -7.193 1 32.48 ? N1 YS4 401 F 1 HETATM 11 C C12 YS4 . . . B 2 14.793 31.301 -7.618 1 35.94 ? C12 YS4 401 F 1 HETATM 12 C C11 YS4 . . . B 2 15.545 30.239 -7.072 1 38.05 ? C11 YS4 401 F 1 HETATM 13 N N2 YS4 . . . B 2 13.836 31.077 -8.57 1 34.38 ? N2 YS4 401 F 1 HETATM 14 C C14 YS4 . . . B 2 13.564 29.789 -9.039 1 31.72 ? C14 YS4 401 F 1 HETATM 15 C C15 YS4 . . . B 2 14.321 28.747 -8.499 1 31.36 ? C15 YS4 401 F 1 HETATM 16 C C10 YS4 . . . B 2 15.34 28.938 -7.52 1 35.02 ? C10 YS4 401 F 1 HETATM 17 C C9 YS4 . . . B 2 16.13 27.856 -6.987 1 33.77 ? C9 YS4 401 F 1 HETATM 18 C C6 YS4 . . . B 2 16.187 26.634 -7.679 1 39.07 ? C6 YS4 401 F 1 HETATM 19 C C5 YS4 . . . B 2 16.926 25.504 -7.206 1 38.98 ? C5 YS4 401 F 1 HETATM 20 C C8 YS4 . . . B 2 16.862 27.935 -5.764 1 36.61 ? C8 YS4 401 F 1 HETATM 21 C C7 YS4 . . . B 2 17.617 26.834 -5.288 1 36.25 ? C7 YS4 401 F 1 HETATM 22 C C4 YS4 . . . B 2 17.661 25.599 -5.997 1 38.81 ? C4 YS4 401 F 1 HETATM 23 O O1 YS4 . . . B 2 18.33 24.443 -5.573 1 35.27 ? O1 YS4 401 F 1 HETATM 24 C C2 YS4 . . . B 2 19.19 24.486 -4.42 1 35.82 ? C2 YS4 401 F 1 HETATM 25 C C1 YS4 . . . B 2 20.541 24.986 -4.84 1 38.16 ? C1 YS4 401 F 1 HETATM 26 C C3 YS4 . . . B 2 19.414 23.065 -3.929 1 40.19 ? C3 YS4 401 F 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 26 #