data_4H75 # _model_server_result.job_id mD7y5IPPh04DmG-fc9X8ow _model_server_result.datetime_utc '2024-11-16 00:44:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h75 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4H75 # _exptl.entry_id 4H75 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H75 _cell.length_a 122.429 _cell.length_b 42.685 _cell.length_c 50.307 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H75 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C THR 3 B THR 3 1_555 B N M3L 4 B M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C M3L 4 B M3L 4 1_555 B N GLN 5 B GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4H75 _atom_sites.fract_transf_matrix[1][1] 0.008168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 301 1 GOL GOL . D 4 SO4 A 1 302 1 SO4 SO4 . E 4 SO4 A 1 303 2 SO4 SO4 . F 5 NHE A 1 304 1 NHE NHE . G 4 SO4 B 1 101 3 SO4 SO4 . H 6 HOH A 1 401 1 HOH HOH . H 6 HOH A 2 402 2 HOH HOH . H 6 HOH A 3 403 3 HOH HOH . H 6 HOH A 4 404 4 HOH HOH . H 6 HOH A 5 405 5 HOH HOH . H 6 HOH A 6 406 6 HOH HOH . H 6 HOH A 7 407 7 HOH HOH . H 6 HOH A 8 408 8 HOH HOH . H 6 HOH A 9 409 9 HOH HOH . H 6 HOH A 10 410 10 HOH HOH . H 6 HOH A 11 411 11 HOH HOH . H 6 HOH A 12 412 12 HOH HOH . H 6 HOH A 13 413 13 HOH HOH . H 6 HOH A 14 414 15 HOH HOH . H 6 HOH A 15 415 16 HOH HOH . H 6 HOH A 16 416 17 HOH HOH . H 6 HOH A 17 417 18 HOH HOH . H 6 HOH A 18 418 19 HOH HOH . H 6 HOH A 19 419 20 HOH HOH . H 6 HOH A 20 420 21 HOH HOH . H 6 HOH A 21 421 23 HOH HOH . H 6 HOH A 22 422 24 HOH HOH . H 6 HOH A 23 423 25 HOH HOH . H 6 HOH A 24 424 26 HOH HOH . H 6 HOH A 25 425 27 HOH HOH . H 6 HOH A 26 426 28 HOH HOH . H 6 HOH A 27 427 30 HOH HOH . H 6 HOH A 28 428 32 HOH HOH . H 6 HOH A 29 429 34 HOH HOH . H 6 HOH A 30 430 36 HOH HOH . H 6 HOH A 31 431 37 HOH HOH . H 6 HOH A 32 432 38 HOH HOH . H 6 HOH A 33 433 39 HOH HOH . H 6 HOH A 34 434 40 HOH HOH . H 6 HOH A 35 435 41 HOH HOH . H 6 HOH A 36 436 42 HOH HOH . H 6 HOH A 37 437 43 HOH HOH . H 6 HOH A 38 438 44 HOH HOH . H 6 HOH A 39 439 45 HOH HOH . H 6 HOH A 40 440 46 HOH HOH . H 6 HOH A 41 441 47 HOH HOH . H 6 HOH A 42 442 48 HOH HOH . H 6 HOH A 43 443 49 HOH HOH . H 6 HOH A 44 444 50 HOH HOH . H 6 HOH A 45 445 51 HOH HOH . H 6 HOH A 46 446 52 HOH HOH . H 6 HOH A 47 447 53 HOH HOH . H 6 HOH A 48 448 55 HOH HOH . H 6 HOH A 49 449 56 HOH HOH . H 6 HOH A 50 450 57 HOH HOH . H 6 HOH A 51 451 58 HOH HOH . H 6 HOH A 52 452 59 HOH HOH . H 6 HOH A 53 453 60 HOH HOH . H 6 HOH A 54 454 61 HOH HOH . H 6 HOH A 55 455 63 HOH HOH . H 6 HOH A 56 456 64 HOH HOH . H 6 HOH A 57 457 65 HOH HOH . H 6 HOH A 58 458 66 HOH HOH . H 6 HOH A 59 459 67 HOH HOH . H 6 HOH A 60 460 68 HOH HOH . H 6 HOH A 61 461 70 HOH HOH . H 6 HOH A 62 462 71 HOH HOH . H 6 HOH A 63 463 72 HOH HOH . H 6 HOH A 64 464 73 HOH HOH . H 6 HOH A 65 465 74 HOH HOH . H 6 HOH A 66 466 75 HOH HOH . H 6 HOH A 67 467 76 HOH HOH . H 6 HOH A 68 468 77 HOH HOH . H 6 HOH A 69 469 78 HOH HOH . H 6 HOH A 70 470 80 HOH HOH . H 6 HOH A 71 471 81 HOH HOH . H 6 HOH A 72 472 82 HOH HOH . H 6 HOH A 73 473 83 HOH HOH . H 6 HOH A 74 474 84 HOH HOH . H 6 HOH A 75 475 85 HOH HOH . H 6 HOH A 76 476 86 HOH HOH . H 6 HOH A 77 477 87 HOH HOH . H 6 HOH A 78 478 89 HOH HOH . H 6 HOH A 79 479 90 HOH HOH . H 6 HOH A 80 480 91 HOH HOH . H 6 HOH A 81 481 92 HOH HOH . H 6 HOH A 82 482 93 HOH HOH . H 6 HOH A 83 483 94 HOH HOH . H 6 HOH A 84 484 95 HOH HOH . H 6 HOH A 85 485 96 HOH HOH . H 6 HOH A 86 486 97 HOH HOH . H 6 HOH A 87 487 98 HOH HOH . H 6 HOH A 88 488 99 HOH HOH . H 6 HOH A 89 489 100 HOH HOH . H 6 HOH A 90 490 102 HOH HOH . H 6 HOH A 91 491 103 HOH HOH . H 6 HOH A 92 492 104 HOH HOH . H 6 HOH A 93 493 108 HOH HOH . H 6 HOH A 94 494 109 HOH HOH . H 6 HOH A 95 495 110 HOH HOH . I 6 HOH B 1 201 14 HOH HOH . I 6 HOH B 2 202 22 HOH HOH . I 6 HOH B 3 203 29 HOH HOH . I 6 HOH B 4 204 31 HOH HOH . I 6 HOH B 5 205 33 HOH HOH . I 6 HOH B 6 206 35 HOH HOH . I 6 HOH B 7 207 54 HOH HOH . I 6 HOH B 8 208 62 HOH HOH . I 6 HOH B 9 209 69 HOH HOH . I 6 HOH B 10 210 79 HOH HOH . I 6 HOH B 11 211 88 HOH HOH . I 6 HOH B 12 212 101 HOH HOH . I 6 HOH B 13 213 105 HOH HOH . I 6 HOH B 14 214 106 HOH HOH . I 6 HOH B 15 215 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 19.013 23.025 4.585 1 59.37 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . C 3 18.588 22.18 5.62 1 53.39 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . C 3 19.88 22.224 3.636 1 54.5 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . C 3 21.105 22.909 3.497 1 70.38 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . C 3 19.177 22.131 2.287 1 50.66 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . C 3 19.185 20.793 1.823 1 54.12 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 404 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 6 #