data_4H7D # _model_server_result.job_id VSY4cqhN37aIXpEyVOYaOw _model_server_result.datetime_utc '2024-11-13 20:52:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h7d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4H7D # _exptl.entry_id 4H7D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H7D _cell.length_a 50.44 _cell.length_b 72.057 _cell.length_c 73.544 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H7D _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 175 A PRO 175 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 A O ILE 178 A ILE 178 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 D CA CA . A CA 403 1_555 G O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc4 D CA CA . A CA 403 1_555 G O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4H7D _atom_sites.fract_transf_matrix[1][1] 0.019826 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 500 GOL GOL . C 2 GOL A 1 402 502 GOL GOL . D 3 CA A 1 403 1 CA CA . E 4 CL A 1 404 1 CL CL . F 4 CL A 1 405 2 CL CL . G 5 HOH A 1 501 1 HOH HOH . G 5 HOH A 2 502 2 HOH HOH . G 5 HOH A 3 503 3 HOH HOH . G 5 HOH A 4 504 4 HOH HOH . G 5 HOH A 5 505 5 HOH HOH . G 5 HOH A 6 506 6 HOH HOH . G 5 HOH A 7 507 7 HOH HOH . G 5 HOH A 8 508 8 HOH HOH . G 5 HOH A 9 509 9 HOH HOH . G 5 HOH A 10 510 10 HOH HOH . G 5 HOH A 11 511 11 HOH HOH . G 5 HOH A 12 512 12 HOH HOH . G 5 HOH A 13 513 13 HOH HOH . G 5 HOH A 14 514 14 HOH HOH . G 5 HOH A 15 515 15 HOH HOH . G 5 HOH A 16 516 16 HOH HOH . G 5 HOH A 17 517 17 HOH HOH . G 5 HOH A 18 518 18 HOH HOH . G 5 HOH A 19 519 19 HOH HOH . G 5 HOH A 20 520 20 HOH HOH . G 5 HOH A 21 521 21 HOH HOH . G 5 HOH A 22 522 22 HOH HOH . G 5 HOH A 23 523 23 HOH HOH . G 5 HOH A 24 524 24 HOH HOH . G 5 HOH A 25 525 25 HOH HOH . G 5 HOH A 26 526 26 HOH HOH . G 5 HOH A 27 527 27 HOH HOH . G 5 HOH A 28 528 28 HOH HOH . G 5 HOH A 29 529 29 HOH HOH . G 5 HOH A 30 530 30 HOH HOH . G 5 HOH A 31 531 31 HOH HOH . G 5 HOH A 32 532 32 HOH HOH . G 5 HOH A 33 533 33 HOH HOH . G 5 HOH A 34 534 34 HOH HOH . G 5 HOH A 35 535 35 HOH HOH . G 5 HOH A 36 536 36 HOH HOH . G 5 HOH A 37 537 37 HOH HOH . G 5 HOH A 38 538 38 HOH HOH . G 5 HOH A 39 539 39 HOH HOH . G 5 HOH A 40 540 40 HOH HOH . G 5 HOH A 41 541 41 HOH HOH . G 5 HOH A 42 542 42 HOH HOH . G 5 HOH A 43 543 43 HOH HOH . G 5 HOH A 44 544 44 HOH HOH . G 5 HOH A 45 545 45 HOH HOH . G 5 HOH A 46 546 46 HOH HOH . G 5 HOH A 47 547 47 HOH HOH . G 5 HOH A 48 548 48 HOH HOH . G 5 HOH A 49 549 49 HOH HOH . G 5 HOH A 50 550 50 HOH HOH . G 5 HOH A 51 551 51 HOH HOH . G 5 HOH A 52 552 52 HOH HOH . G 5 HOH A 53 553 53 HOH HOH . G 5 HOH A 54 554 54 HOH HOH . G 5 HOH A 55 555 55 HOH HOH . G 5 HOH A 56 556 56 HOH HOH . G 5 HOH A 57 557 57 HOH HOH . G 5 HOH A 58 558 59 HOH HOH . G 5 HOH A 59 559 60 HOH HOH . G 5 HOH A 60 560 61 HOH HOH . G 5 HOH A 61 561 62 HOH HOH . G 5 HOH A 62 562 63 HOH HOH . G 5 HOH A 63 563 64 HOH HOH . G 5 HOH A 64 564 65 HOH HOH . G 5 HOH A 65 565 66 HOH HOH . G 5 HOH A 66 566 67 HOH HOH . G 5 HOH A 67 567 68 HOH HOH . G 5 HOH A 68 568 69 HOH HOH . G 5 HOH A 69 569 71 HOH HOH . G 5 HOH A 70 570 72 HOH HOH . G 5 HOH A 71 571 73 HOH HOH . G 5 HOH A 72 572 76 HOH HOH . G 5 HOH A 73 573 77 HOH HOH . G 5 HOH A 74 574 78 HOH HOH . G 5 HOH A 75 575 79 HOH HOH . G 5 HOH A 76 576 80 HOH HOH . G 5 HOH A 77 577 81 HOH HOH . G 5 HOH A 78 578 83 HOH HOH . G 5 HOH A 79 579 84 HOH HOH . G 5 HOH A 80 580 85 HOH HOH . G 5 HOH A 81 581 86 HOH HOH . G 5 HOH A 82 582 88 HOH HOH . G 5 HOH A 83 583 89 HOH HOH . G 5 HOH A 84 584 90 HOH HOH . G 5 HOH A 85 585 91 HOH HOH . G 5 HOH A 86 586 92 HOH HOH . G 5 HOH A 87 587 93 HOH HOH . G 5 HOH A 88 588 94 HOH HOH . G 5 HOH A 89 589 95 HOH HOH . G 5 HOH A 90 590 96 HOH HOH . G 5 HOH A 91 591 97 HOH HOH . G 5 HOH A 92 592 98 HOH HOH . G 5 HOH A 93 593 99 HOH HOH . G 5 HOH A 94 594 100 HOH HOH . G 5 HOH A 95 595 101 HOH HOH . G 5 HOH A 96 596 103 HOH HOH . G 5 HOH A 97 597 104 HOH HOH . G 5 HOH A 98 598 105 HOH HOH . G 5 HOH A 99 599 106 HOH HOH . G 5 HOH A 100 600 107 HOH HOH . G 5 HOH A 101 601 108 HOH HOH . G 5 HOH A 102 602 109 HOH HOH . G 5 HOH A 103 603 110 HOH HOH . G 5 HOH A 104 604 111 HOH HOH . G 5 HOH A 105 605 112 HOH HOH . G 5 HOH A 106 606 113 HOH HOH . G 5 HOH A 107 607 114 HOH HOH . G 5 HOH A 108 608 115 HOH HOH . G 5 HOH A 109 609 116 HOH HOH . G 5 HOH A 110 610 117 HOH HOH . G 5 HOH A 111 611 118 HOH HOH . G 5 HOH A 112 612 119 HOH HOH . G 5 HOH A 113 613 120 HOH HOH . G 5 HOH A 114 614 121 HOH HOH . G 5 HOH A 115 615 122 HOH HOH . G 5 HOH A 116 616 123 HOH HOH . G 5 HOH A 117 617 124 HOH HOH . G 5 HOH A 118 618 125 HOH HOH . G 5 HOH A 119 619 126 HOH HOH . G 5 HOH A 120 620 127 HOH HOH . G 5 HOH A 121 621 128 HOH HOH . G 5 HOH A 122 622 129 HOH HOH . G 5 HOH A 123 623 130 HOH HOH . G 5 HOH A 124 624 132 HOH HOH . G 5 HOH A 125 625 133 HOH HOH . G 5 HOH A 126 626 134 HOH HOH . G 5 HOH A 127 627 135 HOH HOH . G 5 HOH A 128 628 136 HOH HOH . G 5 HOH A 129 629 137 HOH HOH . G 5 HOH A 130 630 138 HOH HOH . G 5 HOH A 131 631 140 HOH HOH . G 5 HOH A 132 632 141 HOH HOH . G 5 HOH A 133 633 142 HOH HOH . G 5 HOH A 134 634 143 HOH HOH . G 5 HOH A 135 635 144 HOH HOH . G 5 HOH A 136 636 145 HOH HOH . G 5 HOH A 137 637 148 HOH HOH . G 5 HOH A 138 638 149 HOH HOH . G 5 HOH A 139 639 150 HOH HOH . G 5 HOH A 140 640 152 HOH HOH . G 5 HOH A 141 641 154 HOH HOH . G 5 HOH A 142 642 158 HOH HOH . G 5 HOH A 143 643 159 HOH HOH . G 5 HOH A 144 644 161 HOH HOH . G 5 HOH A 145 645 166 HOH HOH . G 5 HOH A 146 646 167 HOH HOH . G 5 HOH A 147 647 168 HOH HOH . G 5 HOH A 148 648 172 HOH HOH . G 5 HOH A 149 649 177 HOH HOH . G 5 HOH A 150 650 178 HOH HOH . G 5 HOH A 151 651 179 HOH HOH . G 5 HOH A 152 652 182 HOH HOH . G 5 HOH A 153 653 203 HOH HOH . G 5 HOH A 154 654 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 32.078 -9.358 -18.747 1 30.13 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 2 31.887 -8.305 -19.691 1 32.88 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 2 32.025 -10.676 -19.497 1 28.96 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 2 33.181 -11.446 -19.149 1 29.52 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 2 30.759 -11.416 -19.087 1 27.93 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 2 30.718 -12.703 -19.72 1 27.99 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 6 #