data_4H7Q
#
_model_server_result.job_id            OcgUd0JfEi5mbSQWLhEZ0g 
_model_server_result.datetime_utc      '2025-06-24 11:53:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4h7q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    4H7Q 
#
_exptl.entry_id    4H7Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4H7Q 
_cell.length_a            128.516 
_cell.length_b            128.516 
_cell.length_c            73.797 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4H7Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 279 A ASN 249 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc2 A O VAL 328 A VAL 298 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? 
metalc ? metalc3 A O ASP 330 A ASP 300 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? 
metalc ? metalc4 A O PHE 333 A PHE 303 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? 
metalc ? metalc5 A O GLY 367 A GLY 337 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? 
metalc ? metalc6 B O1A ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc7 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc8 B O2A ADP . A ADP 401 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
metalc ? metalc9 D MG MG . A MG 403 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc10 D MG MG . A MG 403 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc11 D MG MG . A MG 403 1_555 F O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     4H7Q 
_atom_sites.fract_transf_matrix[1][1]    0.007781 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007781 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013551 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 1 ADP ADP . 
C 3 COI A 1 402 1 COI COI . 
D 4 MG A 1 403 1 MG MG . 
E 5 K A 1 404 1 K K . 
F 6 HOH A 1 501 1 HOH HOH . 
F 6 HOH A 2 502 2 HOH HOH . 
F 6 HOH A 3 503 3 HOH HOH . 
F 6 HOH A 4 504 4 HOH HOH . 
F 6 HOH A 5 505 5 HOH HOH . 
F 6 HOH A 6 506 6 HOH HOH . 
F 6 HOH A 7 507 7 HOH HOH . 
F 6 HOH A 8 508 8 HOH HOH . 
F 6 HOH A 9 509 9 HOH HOH . 
F 6 HOH A 10 510 10 HOH HOH . 
F 6 HOH A 11 511 11 HOH HOH . 
F 6 HOH A 12 512 12 HOH HOH . 
F 6 HOH A 13 513 13 HOH HOH . 
F 6 HOH A 14 514 14 HOH HOH . 
F 6 HOH A 15 515 15 HOH HOH . 
F 6 HOH A 16 516 16 HOH HOH . 
F 6 HOH A 17 517 17 HOH HOH . 
F 6 HOH A 18 518 18 HOH HOH . 
F 6 HOH A 19 519 19 HOH HOH . 
F 6 HOH A 20 520 20 HOH HOH . 
F 6 HOH A 21 521 21 HOH HOH . 
F 6 HOH A 22 522 22 HOH HOH . 
F 6 HOH A 23 523 23 HOH HOH . 
F 6 HOH A 24 524 24 HOH HOH . 
F 6 HOH A 25 525 25 HOH HOH . 
F 6 HOH A 26 526 26 HOH HOH . 
F 6 HOH A 27 527 27 HOH HOH . 
F 6 HOH A 28 528 28 HOH HOH . 
F 6 HOH A 29 529 29 HOH HOH . 
F 6 HOH A 30 530 30 HOH HOH . 
F 6 HOH A 31 531 31 HOH HOH . 
F 6 HOH A 32 532 32 HOH HOH . 
F 6 HOH A 33 533 33 HOH HOH . 
F 6 HOH A 34 534 34 HOH HOH . 
F 6 HOH A 35 535 35 HOH HOH . 
F 6 HOH A 36 536 36 HOH HOH . 
F 6 HOH A 37 537 37 HOH HOH . 
F 6 HOH A 38 538 38 HOH HOH . 
F 6 HOH A 39 539 39 HOH HOH . 
F 6 HOH A 40 540 40 HOH HOH . 
F 6 HOH A 41 541 41 HOH HOH . 
F 6 HOH A 42 542 42 HOH HOH . 
F 6 HOH A 43 543 43 HOH HOH . 
F 6 HOH A 44 544 44 HOH HOH . 
F 6 HOH A 45 545 45 HOH HOH . 
F 6 HOH A 46 546 46 HOH HOH . 
F 6 HOH A 47 547 47 HOH HOH . 
F 6 HOH A 48 548 48 HOH HOH . 
F 6 HOH A 49 549 49 HOH HOH . 
F 6 HOH A 50 550 50 HOH HOH . 
F 6 HOH A 51 551 51 HOH HOH . 
F 6 HOH A 52 552 52 HOH HOH . 
F 6 HOH A 53 553 53 HOH HOH . 
F 6 HOH A 54 554 54 HOH HOH . 
F 6 HOH A 55 555 55 HOH HOH . 
F 6 HOH A 56 556 56 HOH HOH . 
F 6 HOH A 57 557 58 HOH HOH . 
F 6 HOH A 58 558 59 HOH HOH . 
F 6 HOH A 59 559 60 HOH HOH . 
F 6 HOH A 60 560 61 HOH HOH . 
F 6 HOH A 61 561 63 HOH HOH . 
F 6 HOH A 62 562 64 HOH HOH . 
F 6 HOH A 63 563 65 HOH HOH . 
F 6 HOH A 64 564 68 HOH HOH . 
F 6 HOH A 65 565 69 HOH HOH . 
F 6 HOH A 66 566 70 HOH HOH . 
F 6 HOH A 67 567 71 HOH HOH . 
F 6 HOH A 68 568 72 HOH HOH . 
F 6 HOH A 69 569 74 HOH HOH . 
F 6 HOH A 70 570 79 HOH HOH . 
F 6 HOH A 71 571 82 HOH HOH . 
F 6 HOH A 72 572 85 HOH HOH . 
F 6 HOH A 73 573 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 4.954 -32.857 -4.784 1 45.67 ? PB ADP 401 A 1 
HETATM 2 O O1B ADP . . . B 2 6.221 -33.486 -4.261 1 46.38 ? O1B ADP 401 A 1 
HETATM 3 O O2B ADP . . . B 2 5.014 -32.486 -6.261 1 45.59 ? O2B ADP 401 A 1 
HETATM 4 O O3B ADP . . . B 2 3.726 -33.632 -4.326 1 45.79 ? O3B ADP 401 A 1 
HETATM 5 P PA ADP . . . B 2 5.683 -30.48 -3.306 1 39.67 ? PA ADP 401 A 1 
HETATM 6 O O1A ADP . . . B 2 6.5 -31.196 -2.26 1 41.12 ? O1A ADP 401 A 1 
HETATM 7 O O2A ADP . . . B 2 4.905 -29.319 -2.796 1 37.25 ? O2A ADP 401 A 1 
HETATM 8 O O3A ADP . . . B 2 4.632 -31.459 -4.036 1 42.85 ? O3A ADP 401 A 1 
HETATM 9 O O5' ADP . . . B 2 6.656 -30.015 -4.509 1 42.58 ? O5' ADP 401 A 1 
HETATM 10 C C5' ADP . . . B 2 6.194 -29.16 -5.556 1 39.48 ? C5' ADP 401 A 1 
HETATM 11 C C4' ADP . . . B 2 7.126 -29.288 -6.757 1 44.06 ? C4' ADP 401 A 1 
HETATM 12 O O4' ADP . . . B 2 8.355 -28.645 -6.446 1 41.14 ? O4' ADP 401 A 1 
HETATM 13 C C3' ADP . . . B 2 7.522 -30.722 -7.09 1 42.74 ? C3' ADP 401 A 1 
HETATM 14 O O3' ADP . . . B 2 6.563 -31.392 -7.924 1 43.35 ? O3' ADP 401 A 1 
HETATM 15 C C2' ADP . . . B 2 8.838 -30.533 -7.812 1 48.02 ? C2' ADP 401 A 1 
HETATM 16 O O2' ADP . . . B 2 8.572 -30.192 -9.183 1 45.01 ? O2' ADP 401 A 1 
HETATM 17 C C1' ADP . . . B 2 9.407 -29.281 -7.169 1 40.47 ? C1' ADP 401 A 1 
HETATM 18 N N9 ADP . . . B 2 10.48 -29.569 -6.195 1 40.31 ? N9 ADP 401 A 1 
HETATM 19 C C8 ADP . . . B 2 10.357 -29.597 -4.849 1 41.29 ? C8 ADP 401 A 1 
HETATM 20 N N7 ADP . . . B 2 11.548 -29.878 -4.261 1 41.5 ? N7 ADP 401 A 1 
HETATM 21 C C5 ADP . . . B 2 12.443 -30.024 -5.259 1 41.08 ? C5 ADP 401 A 1 
HETATM 22 C C6 ADP . . . B 2 13.883 -30.321 -5.338 1 34.03 ? C6 ADP 401 A 1 
HETATM 23 N N6 ADP . . . B 2 14.582 -30.525 -4.196 1 33.96 ? N6 ADP 401 A 1 
HETATM 24 N N1 ADP . . . B 2 14.444 -30.388 -6.571 1 35.32 ? N1 ADP 401 A 1 
HETATM 25 C C2 ADP . . . B 2 13.725 -30.206 -7.7 1 42.68 ? C2 ADP 401 A 1 
HETATM 26 N N3 ADP . . . B 2 12.405 -29.93 -7.709 1 44.05 ? N3 ADP 401 A 1 
HETATM 27 C C4 ADP . . . B 2 11.739 -29.82 -6.53 1 39.91 ? C4 ADP 401 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           225 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#