data_4H7Q
#
_model_server_result.job_id            dOSnVgxbZB6zTwqL73TJHQ 
_model_server_result.datetime_utc      '2024-11-28 21:15:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4h7q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    4H7Q 
#
_exptl.entry_id    4H7Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              130.142 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXO-4-METHYLPENTANOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4H7Q 
_cell.length_a            128.516 
_cell.length_b            128.516 
_cell.length_c            73.797 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4H7Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 279 A ASN 249 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc2 A O VAL 328 A VAL 298 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? 
metalc ? metalc3 A O ASP 330 A ASP 300 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? 
metalc ? metalc4 A O PHE 333 A PHE 303 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? 
metalc ? metalc5 A O GLY 367 A GLY 337 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? 
metalc ? metalc6 B O1A ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc7 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc8 B O2A ADP . A ADP 401 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
metalc ? metalc9 D MG MG . A MG 403 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc10 D MG MG . A MG 403 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc11 D MG MG . A MG 403 1_555 F O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
#
_chem_comp.formula           'C6 H10 O3' 
_chem_comp.formula_weight    130.142 
_chem_comp.id                COI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXO-4-METHYLPENTANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'alpha-ketoisocaproic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 COI doub 114 n n 
C1 O2 COI sing 115 n n 
C1 C2 COI sing 116 n n 
O2 HO2 COI sing 117 n n 
C2 O3 COI doub 118 n n 
C2 C3 COI sing 119 n n 
C3 C4 COI sing 120 n n 
C3 H31 COI sing 121 n n 
C3 H32 COI sing 122 n n 
C4 C5 COI sing 123 n n 
C4 C6 COI sing 124 n n 
C4 H4 COI sing 125 n n 
C5 H51 COI sing 126 n n 
C5 H52 COI sing 127 n n 
C5 H53 COI sing 128 n n 
C6 H61 COI sing 129 n n 
C6 H62 COI sing 130 n n 
C6 H63 COI sing 131 n n 
#
_atom_sites.entry_id                     4H7Q 
_atom_sites.fract_transf_matrix[1][1]    0.007781 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007781 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013551 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 1 ADP ADP . 
C 3 COI A 1 402 1 COI COI . 
D 4 MG A 1 403 1 MG MG . 
E 5 K A 1 404 1 K K . 
F 6 HOH A 1 501 1 HOH HOH . 
F 6 HOH A 2 502 2 HOH HOH . 
F 6 HOH A 3 503 3 HOH HOH . 
F 6 HOH A 4 504 4 HOH HOH . 
F 6 HOH A 5 505 5 HOH HOH . 
F 6 HOH A 6 506 6 HOH HOH . 
F 6 HOH A 7 507 7 HOH HOH . 
F 6 HOH A 8 508 8 HOH HOH . 
F 6 HOH A 9 509 9 HOH HOH . 
F 6 HOH A 10 510 10 HOH HOH . 
F 6 HOH A 11 511 11 HOH HOH . 
F 6 HOH A 12 512 12 HOH HOH . 
F 6 HOH A 13 513 13 HOH HOH . 
F 6 HOH A 14 514 14 HOH HOH . 
F 6 HOH A 15 515 15 HOH HOH . 
F 6 HOH A 16 516 16 HOH HOH . 
F 6 HOH A 17 517 17 HOH HOH . 
F 6 HOH A 18 518 18 HOH HOH . 
F 6 HOH A 19 519 19 HOH HOH . 
F 6 HOH A 20 520 20 HOH HOH . 
F 6 HOH A 21 521 21 HOH HOH . 
F 6 HOH A 22 522 22 HOH HOH . 
F 6 HOH A 23 523 23 HOH HOH . 
F 6 HOH A 24 524 24 HOH HOH . 
F 6 HOH A 25 525 25 HOH HOH . 
F 6 HOH A 26 526 26 HOH HOH . 
F 6 HOH A 27 527 27 HOH HOH . 
F 6 HOH A 28 528 28 HOH HOH . 
F 6 HOH A 29 529 29 HOH HOH . 
F 6 HOH A 30 530 30 HOH HOH . 
F 6 HOH A 31 531 31 HOH HOH . 
F 6 HOH A 32 532 32 HOH HOH . 
F 6 HOH A 33 533 33 HOH HOH . 
F 6 HOH A 34 534 34 HOH HOH . 
F 6 HOH A 35 535 35 HOH HOH . 
F 6 HOH A 36 536 36 HOH HOH . 
F 6 HOH A 37 537 37 HOH HOH . 
F 6 HOH A 38 538 38 HOH HOH . 
F 6 HOH A 39 539 39 HOH HOH . 
F 6 HOH A 40 540 40 HOH HOH . 
F 6 HOH A 41 541 41 HOH HOH . 
F 6 HOH A 42 542 42 HOH HOH . 
F 6 HOH A 43 543 43 HOH HOH . 
F 6 HOH A 44 544 44 HOH HOH . 
F 6 HOH A 45 545 45 HOH HOH . 
F 6 HOH A 46 546 46 HOH HOH . 
F 6 HOH A 47 547 47 HOH HOH . 
F 6 HOH A 48 548 48 HOH HOH . 
F 6 HOH A 49 549 49 HOH HOH . 
F 6 HOH A 50 550 50 HOH HOH . 
F 6 HOH A 51 551 51 HOH HOH . 
F 6 HOH A 52 552 52 HOH HOH . 
F 6 HOH A 53 553 53 HOH HOH . 
F 6 HOH A 54 554 54 HOH HOH . 
F 6 HOH A 55 555 55 HOH HOH . 
F 6 HOH A 56 556 56 HOH HOH . 
F 6 HOH A 57 557 58 HOH HOH . 
F 6 HOH A 58 558 59 HOH HOH . 
F 6 HOH A 59 559 60 HOH HOH . 
F 6 HOH A 60 560 61 HOH HOH . 
F 6 HOH A 61 561 63 HOH HOH . 
F 6 HOH A 62 562 64 HOH HOH . 
F 6 HOH A 63 563 65 HOH HOH . 
F 6 HOH A 64 564 68 HOH HOH . 
F 6 HOH A 65 565 69 HOH HOH . 
F 6 HOH A 66 566 70 HOH HOH . 
F 6 HOH A 67 567 71 HOH HOH . 
F 6 HOH A 68 568 72 HOH HOH . 
F 6 HOH A 69 569 74 HOH HOH . 
F 6 HOH A 70 570 79 HOH HOH . 
F 6 HOH A 71 571 82 HOH HOH . 
F 6 HOH A 72 572 85 HOH HOH . 
F 6 HOH A 73 573 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 COI . A . C 3 -7.986 -31.942 13.375 0.5 57.96 ? C1 COI 402 A 1 
HETATM 2 C C1 COI . B . C 3 -7.908 -31.945 13.62 0.5 57.77 ? C1 COI 402 A 1 
HETATM 3 O O1 COI . A . C 3 -8.589 -31.478 12.376 0.5 58.93 ? O1 COI 402 A 1 
HETATM 4 O O1 COI . B . C 3 -8.383 -30.848 13.26 0.5 59.72 ? O1 COI 402 A 1 
HETATM 5 O O2 COI . A . C 3 -7.065 -32.795 13.236 0.5 54.45 ? O2 COI 402 A 1 
HETATM 6 O O2 COI . B . C 3 -7.308 -32.696 12.8 0.5 56.72 ? O2 COI 402 A 1 
HETATM 7 C C2 COI . A . C 3 -8.337 -31.53 14.747 0.5 61.39 ? C2 COI 402 A 1 
HETATM 8 C C2 COI . B . C 3 -8.059 -32.377 15.017 0.5 63.53 ? C2 COI 402 A 1 
HETATM 9 O O3 COI . A . C 3 -8.668 -30.395 14.973 0.5 60.39 ? O3 COI 402 A 1 
HETATM 10 O O3 COI . B . C 3 -7.696 -33.475 15.35 0.5 64.73 ? O3 COI 402 A 1 
HETATM 11 C C3 COI . A . C 3 -8.257 -32.584 15.836 0.5 65.76 ? C3 COI 402 A 1 
HETATM 12 C C3 COI . B . C 3 -8.692 -31.427 16.008 0.5 65.77 ? C3 COI 402 A 1 
HETATM 13 C C4 COI . A . C 3 -9.353 -32.667 16.902 0.5 67.26 ? C4 COI 402 A 1 
HETATM 14 C C4 COI . B . C 3 -9.633 -32.037 17.043 0.5 67.74 ? C4 COI 402 A 1 
HETATM 15 C C5 COI . A . C 3 -8.989 -32.143 18.2 0.5 66.69 ? C5 COI 402 A 1 
HETATM 16 C C5 COI . B . C 3 -8.973 -32.404 18.275 0.5 66.29 ? C5 COI 402 A 1 
HETATM 17 C C6 COI . A . C 3 -10.697 -32.266 16.424 0.5 70.62 ? C6 COI 402 A 1 
HETATM 18 C C6 COI . B . C 3 -10.495 -33.1 16.475 0.5 72.25 ? C6 COI 402 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           18 
#