data_4H87
#
_model_server_result.job_id            1nA5BPqzkrNEJEZzHwAk3A 
_model_server_result.datetime_utc      '2025-02-05 07:40:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4h87 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":305}' 
#
_entry.id    4H87 
#
_exptl.entry_id    4H87 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4H87 
_cell.length_a            34.768 
_cell.length_b            82.141 
_cell.length_c            82.467 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4H87 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 
A,C,D,E,F,G,H,I,J,N 2 1 
B,K,L,M,O 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 M N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4H87 
_atom_sites.fract_transf_matrix[1][1]    0.028762 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012174 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012126 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 301 802 SO4 SO4 . 
D 2 SO4 A 1 302 803 SO4 SO4 . 
E 2 SO4 A 1 303 804 SO4 SO4 . 
F 2 SO4 A 1 304 806 SO4 SO4 . 
G 3 GOL A 1 305 807 GOL GOL . 
H 3 GOL A 1 306 808 GOL GOL . 
I 3 GOL A 1 307 810 GOL GOL . 
J 3 GOL A 1 308 811 GOL GOL . 
K 2 SO4 B 1 801 801 SO4 SO4 . 
L 2 SO4 B 1 802 805 SO4 SO4 . 
M 3 GOL B 1 803 809 GOL GOL . 
N 4 HOH A 1 401 812 HOH HOH . 
N 4 HOH A 2 402 813 HOH HOH . 
N 4 HOH A 3 403 814 HOH HOH . 
N 4 HOH A 4 404 815 HOH HOH . 
N 4 HOH A 5 405 816 HOH HOH . 
N 4 HOH A 6 406 817 HOH HOH . 
N 4 HOH A 7 407 818 HOH HOH . 
N 4 HOH A 8 408 819 HOH HOH . 
N 4 HOH A 9 409 820 HOH HOH . 
N 4 HOH A 10 410 821 HOH HOH . 
N 4 HOH A 11 411 822 HOH HOH . 
N 4 HOH A 12 412 823 HOH HOH . 
N 4 HOH A 13 413 824 HOH HOH . 
N 4 HOH A 14 414 825 HOH HOH . 
N 4 HOH A 15 415 826 HOH HOH . 
N 4 HOH A 16 416 827 HOH HOH . 
N 4 HOH A 17 417 828 HOH HOH . 
N 4 HOH A 18 418 829 HOH HOH . 
N 4 HOH A 19 419 830 HOH HOH . 
N 4 HOH A 20 420 831 HOH HOH . 
N 4 HOH A 21 421 832 HOH HOH . 
N 4 HOH A 22 422 833 HOH HOH . 
N 4 HOH A 23 423 834 HOH HOH . 
N 4 HOH A 24 424 835 HOH HOH . 
N 4 HOH A 25 425 836 HOH HOH . 
N 4 HOH A 26 426 837 HOH HOH . 
N 4 HOH A 27 427 838 HOH HOH . 
N 4 HOH A 28 428 839 HOH HOH . 
N 4 HOH A 29 429 840 HOH HOH . 
N 4 HOH A 30 430 841 HOH HOH . 
N 4 HOH A 31 431 842 HOH HOH . 
N 4 HOH A 32 432 843 HOH HOH . 
N 4 HOH A 33 433 844 HOH HOH . 
N 4 HOH A 34 434 845 HOH HOH . 
N 4 HOH A 35 435 846 HOH HOH . 
N 4 HOH A 36 436 847 HOH HOH . 
N 4 HOH A 37 437 848 HOH HOH . 
N 4 HOH A 38 438 849 HOH HOH . 
N 4 HOH A 39 439 850 HOH HOH . 
N 4 HOH A 40 440 851 HOH HOH . 
N 4 HOH A 41 441 852 HOH HOH . 
N 4 HOH A 42 442 853 HOH HOH . 
N 4 HOH A 43 443 854 HOH HOH . 
N 4 HOH A 44 444 855 HOH HOH . 
N 4 HOH A 45 445 856 HOH HOH . 
N 4 HOH A 46 446 857 HOH HOH . 
N 4 HOH A 47 447 858 HOH HOH . 
N 4 HOH A 48 448 859 HOH HOH . 
N 4 HOH A 49 449 860 HOH HOH . 
N 4 HOH A 50 450 861 HOH HOH . 
N 4 HOH A 51 451 862 HOH HOH . 
N 4 HOH A 52 452 863 HOH HOH . 
N 4 HOH A 53 453 864 HOH HOH . 
N 4 HOH A 54 454 865 HOH HOH . 
N 4 HOH A 55 455 866 HOH HOH . 
N 4 HOH A 56 456 867 HOH HOH . 
N 4 HOH A 57 457 868 HOH HOH . 
N 4 HOH A 58 458 869 HOH HOH . 
N 4 HOH A 59 459 870 HOH HOH . 
N 4 HOH A 60 460 871 HOH HOH . 
N 4 HOH A 61 461 872 HOH HOH . 
N 4 HOH A 62 462 873 HOH HOH . 
N 4 HOH A 63 463 874 HOH HOH . 
N 4 HOH A 64 464 875 HOH HOH . 
N 4 HOH A 65 465 876 HOH HOH . 
N 4 HOH A 66 466 877 HOH HOH . 
N 4 HOH A 67 467 878 HOH HOH . 
N 4 HOH A 68 468 879 HOH HOH . 
N 4 HOH A 69 469 880 HOH HOH . 
N 4 HOH A 70 470 881 HOH HOH . 
N 4 HOH A 71 471 882 HOH HOH . 
N 4 HOH A 72 472 883 HOH HOH . 
N 4 HOH A 73 473 884 HOH HOH . 
N 4 HOH A 74 474 885 HOH HOH . 
N 4 HOH A 75 475 886 HOH HOH . 
N 4 HOH A 76 476 887 HOH HOH . 
N 4 HOH A 77 477 888 HOH HOH . 
N 4 HOH A 78 478 889 HOH HOH . 
N 4 HOH A 79 479 890 HOH HOH . 
N 4 HOH A 80 480 891 HOH HOH . 
N 4 HOH A 81 481 892 HOH HOH . 
N 4 HOH A 82 482 893 HOH HOH . 
N 4 HOH A 83 483 894 HOH HOH . 
N 4 HOH A 84 484 896 HOH HOH . 
N 4 HOH A 85 485 897 HOH HOH . 
N 4 HOH A 86 486 898 HOH HOH . 
N 4 HOH A 87 487 899 HOH HOH . 
N 4 HOH A 88 488 900 HOH HOH . 
N 4 HOH A 89 489 901 HOH HOH . 
N 4 HOH A 90 490 902 HOH HOH . 
N 4 HOH A 91 491 903 HOH HOH . 
N 4 HOH A 92 492 904 HOH HOH . 
N 4 HOH A 93 493 906 HOH HOH . 
N 4 HOH A 94 494 907 HOH HOH . 
N 4 HOH A 95 495 908 HOH HOH . 
N 4 HOH A 96 496 909 HOH HOH . 
N 4 HOH A 97 497 910 HOH HOH . 
N 4 HOH A 98 498 911 HOH HOH . 
N 4 HOH A 99 499 912 HOH HOH . 
N 4 HOH A 100 500 913 HOH HOH . 
N 4 HOH A 101 501 914 HOH HOH . 
N 4 HOH A 102 502 915 HOH HOH . 
N 4 HOH A 103 503 968 HOH HOH . 
N 4 HOH A 104 504 1001 HOH HOH . 
N 4 HOH A 105 505 1014 HOH HOH . 
O 4 HOH B 1 901 895 HOH HOH . 
O 4 HOH B 2 902 905 HOH HOH . 
O 4 HOH B 3 903 916 HOH HOH . 
O 4 HOH B 4 904 917 HOH HOH . 
O 4 HOH B 5 905 918 HOH HOH . 
O 4 HOH B 6 906 919 HOH HOH . 
O 4 HOH B 7 907 920 HOH HOH . 
O 4 HOH B 8 908 921 HOH HOH . 
O 4 HOH B 9 909 922 HOH HOH . 
O 4 HOH B 10 910 923 HOH HOH . 
O 4 HOH B 11 911 924 HOH HOH . 
O 4 HOH B 12 912 925 HOH HOH . 
O 4 HOH B 13 913 926 HOH HOH . 
O 4 HOH B 14 914 927 HOH HOH . 
O 4 HOH B 15 915 928 HOH HOH . 
O 4 HOH B 16 916 929 HOH HOH . 
O 4 HOH B 17 917 930 HOH HOH . 
O 4 HOH B 18 918 931 HOH HOH . 
O 4 HOH B 19 919 932 HOH HOH . 
O 4 HOH B 20 920 933 HOH HOH . 
O 4 HOH B 21 921 934 HOH HOH . 
O 4 HOH B 22 922 935 HOH HOH . 
O 4 HOH B 23 923 936 HOH HOH . 
O 4 HOH B 24 924 937 HOH HOH . 
O 4 HOH B 25 925 938 HOH HOH . 
O 4 HOH B 26 926 939 HOH HOH . 
O 4 HOH B 27 927 940 HOH HOH . 
O 4 HOH B 28 928 941 HOH HOH . 
O 4 HOH B 29 929 942 HOH HOH . 
O 4 HOH B 30 930 943 HOH HOH . 
O 4 HOH B 31 931 944 HOH HOH . 
O 4 HOH B 32 932 945 HOH HOH . 
O 4 HOH B 33 933 946 HOH HOH . 
O 4 HOH B 34 934 947 HOH HOH . 
O 4 HOH B 35 935 948 HOH HOH . 
O 4 HOH B 36 936 949 HOH HOH . 
O 4 HOH B 37 937 950 HOH HOH . 
O 4 HOH B 38 938 951 HOH HOH . 
O 4 HOH B 39 939 952 HOH HOH . 
O 4 HOH B 40 940 953 HOH HOH . 
O 4 HOH B 41 941 954 HOH HOH . 
O 4 HOH B 42 942 955 HOH HOH . 
O 4 HOH B 43 943 956 HOH HOH . 
O 4 HOH B 44 944 957 HOH HOH . 
O 4 HOH B 45 945 958 HOH HOH . 
O 4 HOH B 46 946 959 HOH HOH . 
O 4 HOH B 47 947 960 HOH HOH . 
O 4 HOH B 48 948 961 HOH HOH . 
O 4 HOH B 49 949 962 HOH HOH . 
O 4 HOH B 50 950 963 HOH HOH . 
O 4 HOH B 51 951 964 HOH HOH . 
O 4 HOH B 52 952 965 HOH HOH . 
O 4 HOH B 53 953 966 HOH HOH . 
O 4 HOH B 54 954 967 HOH HOH . 
O 4 HOH B 55 955 969 HOH HOH . 
O 4 HOH B 56 956 970 HOH HOH . 
O 4 HOH B 57 957 971 HOH HOH . 
O 4 HOH B 58 958 972 HOH HOH . 
O 4 HOH B 59 959 973 HOH HOH . 
O 4 HOH B 60 960 974 HOH HOH . 
O 4 HOH B 61 961 975 HOH HOH . 
O 4 HOH B 62 962 976 HOH HOH . 
O 4 HOH B 63 963 977 HOH HOH . 
O 4 HOH B 64 964 978 HOH HOH . 
O 4 HOH B 65 965 979 HOH HOH . 
O 4 HOH B 66 966 980 HOH HOH . 
O 4 HOH B 67 967 981 HOH HOH . 
O 4 HOH B 68 968 982 HOH HOH . 
O 4 HOH B 69 969 983 HOH HOH . 
O 4 HOH B 70 970 984 HOH HOH . 
O 4 HOH B 71 971 985 HOH HOH . 
O 4 HOH B 72 972 986 HOH HOH . 
O 4 HOH B 73 973 987 HOH HOH . 
O 4 HOH B 74 974 988 HOH HOH . 
O 4 HOH B 75 975 989 HOH HOH . 
O 4 HOH B 76 976 990 HOH HOH . 
O 4 HOH B 77 977 991 HOH HOH . 
O 4 HOH B 78 978 992 HOH HOH . 
O 4 HOH B 79 979 993 HOH HOH . 
O 4 HOH B 80 980 994 HOH HOH . 
O 4 HOH B 81 981 995 HOH HOH . 
O 4 HOH B 82 982 996 HOH HOH . 
O 4 HOH B 83 983 997 HOH HOH . 
O 4 HOH B 84 984 998 HOH HOH . 
O 4 HOH B 85 985 999 HOH HOH . 
O 4 HOH B 86 986 1000 HOH HOH . 
O 4 HOH B 87 987 1002 HOH HOH . 
O 4 HOH B 88 988 1003 HOH HOH . 
O 4 HOH B 89 989 1004 HOH HOH . 
O 4 HOH B 90 990 1005 HOH HOH . 
O 4 HOH B 91 991 1006 HOH HOH . 
O 4 HOH B 92 992 1007 HOH HOH . 
O 4 HOH B 93 993 1008 HOH HOH . 
O 4 HOH B 94 994 1009 HOH HOH . 
O 4 HOH B 95 995 1010 HOH HOH . 
O 4 HOH B 96 996 1011 HOH HOH . 
O 4 HOH B 97 997 1012 HOH HOH . 
O 4 HOH B 98 998 1013 HOH HOH . 
O 4 HOH B 99 999 1015 HOH HOH . 
O 4 HOH B 100 1000 1016 HOH HOH . 
O 4 HOH B 101 1001 1017 HOH HOH . 
O 4 HOH B 102 1002 1018 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 30.813 39.012 7.974 1 42.32 ? C1 GOL 305 A 1 
HETATM 2 O O1 GOL . . . G 3 30.781 37.734 8.602 1 36.01 ? O1 GOL 305 A 1 
HETATM 3 C C2 GOL . . . G 3 32.123 39.73 8.192 1 48.2 ? C2 GOL 305 A 1 
HETATM 4 O O2 GOL . . . G 3 32.449 39.723 9.587 1 51.31 ? O2 GOL 305 A 1 
HETATM 5 C C3 GOL . . . G 3 31.929 41.157 7.732 1 49.09 ? C3 GOL 305 A 1 
HETATM 6 O O3 GOL . . . G 3 33.054 41.955 8.073 1 52.47 ? O3 GOL 305 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#