data_4H8E # _model_server_result.job_id Ey8uJF-edo2YHHbbwpaS4Q _model_server_result.datetime_utc '2024-11-23 23:33:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h8e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4H8E # _exptl.entry_id 4H8E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.326 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FARNESYL DIPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H8E _cell.length_a 57.303 _cell.length_b 57.303 _cell.length_c 158.824 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H8E _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 33 A ASP 33 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc2 B MG MG . A MG 301 1_555 C O3B FPP . A FPP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc3 B MG MG . A MG 301 1_555 C O2A FPP . A FPP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc4 B MG MG . A MG 301 1_555 E O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc5 B MG MG . A MG 301 1_555 E O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? # _chem_comp.formula 'C15 H28 O7 P2' _chem_comp.formula_weight 382.326 _chem_comp.id FPP _chem_comp.mon_nstd_flag . _chem_comp.name 'FARNESYL DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 FPP sing 83 n n C1 C2 FPP sing 84 n n C1 H11 FPP sing 85 n n C1 H12A FPP sing 86 n n O1 PA FPP sing 87 n n C2 C3 FPP doub 88 e n C2 H2 FPP sing 89 n n C3 C4 FPP sing 90 n n C3 C5 FPP sing 91 n n C4 H41 FPP sing 92 n n C4 H42 FPP sing 93 n n C4 H43 FPP sing 94 n n C5 C6 FPP sing 95 n n C5 H51 FPP sing 96 n n C5 H52 FPP sing 97 n n C6 C7 FPP sing 98 n n C6 H61 FPP sing 99 n n C6 H62 FPP sing 100 n n C7 C8 FPP doub 101 e n C7 H7 FPP sing 102 n n C8 C10 FPP sing 103 n n C8 C9 FPP sing 104 n n C10 H101 FPP sing 105 n n C10 H102 FPP sing 106 n n C10 H103 FPP sing 107 n n C9 C11 FPP sing 108 n n C9 H91 FPP sing 109 n n C9 H92 FPP sing 110 n n C11 C12 FPP sing 111 n n C11 H111 FPP sing 112 n n C11 H112 FPP sing 113 n n C12 C13 FPP doub 114 n n C12 H12 FPP sing 115 n n C13 C14 FPP sing 116 n n C13 C15 FPP sing 117 n n C14 H141 FPP sing 118 n n C14 H142 FPP sing 119 n n C14 H143 FPP sing 120 n n C15 H151 FPP sing 121 n n C15 H152 FPP sing 122 n n C15 H153 FPP sing 123 n n PA O1A FPP doub 124 n n PA O2A FPP sing 125 n n PA O3A FPP sing 126 n n O2A HOA2 FPP sing 127 n n O3A PB FPP sing 128 n n PB O1B FPP doub 129 n n PB O2B FPP sing 130 n n PB O3B FPP sing 131 n n O2B HOB2 FPP sing 132 n n O3B HOB3 FPP sing 133 n n # _atom_sites.entry_id 4H8E _atom_sites.fract_transf_matrix[1][1] 0.017451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 1 MG MG . C 3 FPP A 1 302 2 FPP FPP . D 4 SO4 A 1 303 3 SO4 SO4 . E 5 HOH A 1 401 1 HOH HOH . E 5 HOH A 2 402 2 HOH HOH . E 5 HOH A 3 403 3 HOH HOH . E 5 HOH A 4 404 4 HOH HOH . E 5 HOH A 5 405 5 HOH HOH . E 5 HOH A 6 406 6 HOH HOH . E 5 HOH A 7 407 7 HOH HOH . E 5 HOH A 8 408 8 HOH HOH . E 5 HOH A 9 409 9 HOH HOH . E 5 HOH A 10 410 10 HOH HOH . E 5 HOH A 11 411 11 HOH HOH . E 5 HOH A 12 412 12 HOH HOH . E 5 HOH A 13 413 13 HOH HOH . E 5 HOH A 14 414 14 HOH HOH . E 5 HOH A 15 415 15 HOH HOH . E 5 HOH A 16 416 16 HOH HOH . E 5 HOH A 17 417 17 HOH HOH . E 5 HOH A 18 418 18 HOH HOH . E 5 HOH A 19 419 19 HOH HOH . E 5 HOH A 20 420 20 HOH HOH . E 5 HOH A 21 421 21 HOH HOH . E 5 HOH A 22 422 22 HOH HOH . E 5 HOH A 23 423 23 HOH HOH . E 5 HOH A 24 424 24 HOH HOH . E 5 HOH A 25 425 25 HOH HOH . E 5 HOH A 26 426 26 HOH HOH . E 5 HOH A 27 427 27 HOH HOH . E 5 HOH A 28 428 28 HOH HOH . E 5 HOH A 29 429 29 HOH HOH . E 5 HOH A 30 430 30 HOH HOH . E 5 HOH A 31 431 31 HOH HOH . E 5 HOH A 32 432 32 HOH HOH . E 5 HOH A 33 433 33 HOH HOH . E 5 HOH A 34 434 34 HOH HOH . E 5 HOH A 35 435 35 HOH HOH . E 5 HOH A 36 436 36 HOH HOH . E 5 HOH A 37 437 37 HOH HOH . E 5 HOH A 38 438 38 HOH HOH . E 5 HOH A 39 439 39 HOH HOH . E 5 HOH A 40 440 40 HOH HOH . E 5 HOH A 41 441 41 HOH HOH . E 5 HOH A 42 442 42 HOH HOH . E 5 HOH A 43 443 43 HOH HOH . E 5 HOH A 44 444 44 HOH HOH . E 5 HOH A 45 445 45 HOH HOH . E 5 HOH A 46 446 46 HOH HOH . E 5 HOH A 47 447 47 HOH HOH . E 5 HOH A 48 448 48 HOH HOH . E 5 HOH A 49 449 49 HOH HOH . E 5 HOH A 50 450 50 HOH HOH . E 5 HOH A 51 451 51 HOH HOH . E 5 HOH A 52 452 52 HOH HOH . E 5 HOH A 53 453 53 HOH HOH . E 5 HOH A 54 454 54 HOH HOH . E 5 HOH A 55 455 55 HOH HOH . E 5 HOH A 56 456 56 HOH HOH . E 5 HOH A 57 457 57 HOH HOH . E 5 HOH A 58 458 58 HOH HOH . E 5 HOH A 59 459 59 HOH HOH . E 5 HOH A 60 460 60 HOH HOH . E 5 HOH A 61 461 61 HOH HOH . E 5 HOH A 62 462 62 HOH HOH . E 5 HOH A 63 463 63 HOH HOH . E 5 HOH A 64 464 64 HOH HOH . E 5 HOH A 65 465 65 HOH HOH . E 5 HOH A 66 466 66 HOH HOH . E 5 HOH A 67 467 67 HOH HOH . E 5 HOH A 68 468 68 HOH HOH . E 5 HOH A 69 469 69 HOH HOH . E 5 HOH A 70 470 70 HOH HOH . E 5 HOH A 71 471 71 HOH HOH . E 5 HOH A 72 472 72 HOH HOH . E 5 HOH A 73 473 73 HOH HOH . E 5 HOH A 74 474 74 HOH HOH . E 5 HOH A 75 475 75 HOH HOH . E 5 HOH A 76 476 76 HOH HOH . E 5 HOH A 77 477 77 HOH HOH . E 5 HOH A 78 478 78 HOH HOH . E 5 HOH A 79 479 79 HOH HOH . E 5 HOH A 80 480 80 HOH HOH . E 5 HOH A 81 481 81 HOH HOH . E 5 HOH A 82 482 82 HOH HOH . E 5 HOH A 83 483 83 HOH HOH . E 5 HOH A 84 484 84 HOH HOH . E 5 HOH A 85 485 85 HOH HOH . E 5 HOH A 86 486 86 HOH HOH . E 5 HOH A 87 487 87 HOH HOH . E 5 HOH A 88 488 88 HOH HOH . E 5 HOH A 89 489 89 HOH HOH . E 5 HOH A 90 490 90 HOH HOH . E 5 HOH A 91 491 91 HOH HOH . E 5 HOH A 92 492 92 HOH HOH . E 5 HOH A 93 493 93 HOH HOH . E 5 HOH A 94 494 94 HOH HOH . E 5 HOH A 95 495 95 HOH HOH . E 5 HOH A 96 496 96 HOH HOH . E 5 HOH A 97 497 97 HOH HOH . E 5 HOH A 98 498 98 HOH HOH . E 5 HOH A 99 499 99 HOH HOH . E 5 HOH A 100 500 100 HOH HOH . E 5 HOH A 101 501 101 HOH HOH . E 5 HOH A 102 502 102 HOH HOH . E 5 HOH A 103 503 103 HOH HOH . E 5 HOH A 104 504 104 HOH HOH . E 5 HOH A 105 505 105 HOH HOH . E 5 HOH A 106 506 106 HOH HOH . E 5 HOH A 107 507 107 HOH HOH . E 5 HOH A 108 508 108 HOH HOH . E 5 HOH A 109 509 109 HOH HOH . E 5 HOH A 110 510 110 HOH HOH . E 5 HOH A 111 511 111 HOH HOH . E 5 HOH A 112 512 112 HOH HOH . E 5 HOH A 113 513 113 HOH HOH . E 5 HOH A 114 514 114 HOH HOH . E 5 HOH A 115 515 115 HOH HOH . E 5 HOH A 116 516 116 HOH HOH . E 5 HOH A 117 517 117 HOH HOH . E 5 HOH A 118 518 118 HOH HOH . E 5 HOH A 119 519 119 HOH HOH . E 5 HOH A 120 520 120 HOH HOH . E 5 HOH A 121 521 121 HOH HOH . E 5 HOH A 122 522 122 HOH HOH . E 5 HOH A 123 523 123 HOH HOH . E 5 HOH A 124 524 124 HOH HOH . E 5 HOH A 125 525 125 HOH HOH . E 5 HOH A 126 526 126 HOH HOH . E 5 HOH A 127 527 127 HOH HOH . E 5 HOH A 128 528 128 HOH HOH . E 5 HOH A 129 529 129 HOH HOH . E 5 HOH A 130 530 130 HOH HOH . E 5 HOH A 131 531 131 HOH HOH . E 5 HOH A 132 532 132 HOH HOH . E 5 HOH A 133 533 133 HOH HOH . E 5 HOH A 134 534 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FPP . . . C 3 21.157 2.089 10.038 1 12.81 ? C1 FPP 302 A 1 HETATM 2 O O1 FPP . . . C 3 20.382 1.049 10.579 1 10.13 ? O1 FPP 302 A 1 HETATM 3 C C2 FPP . . . C 3 22.222 1.463 9.304 1 13.3 ? C2 FPP 302 A 1 HETATM 4 C C3 FPP . . . C 3 23.584 1.96 9.441 1 14.37 ? C3 FPP 302 A 1 HETATM 5 C C4 FPP . . . C 3 23.971 3.106 10.37 1 15.35 ? C4 FPP 302 A 1 HETATM 6 C C5 FPP . . . C 3 24.593 1.302 8.547 1 13.67 ? C5 FPP 302 A 1 HETATM 7 C C6 FPP . . . C 3 25.761 0.797 9.376 1 13.29 ? C6 FPP 302 A 1 HETATM 8 C C7 FPP . . . C 3 26.77 0.418 8.297 1 11.3 ? C7 FPP 302 A 1 HETATM 9 C C8 FPP . . . C 3 27.447 -0.883 8.306 1 10.25 ? C8 FPP 302 A 1 HETATM 10 C C10 FPP . . . C 3 27.116 -1.916 9.417 1 15.13 ? C10 FPP 302 A 1 HETATM 11 C C9 FPP . . . C 3 28.405 -1.221 7.24 1 12.66 ? C9 FPP 302 A 1 HETATM 12 C C11 FPP . . . C 3 29.869 -1.09 7.74 1 14.06 ? C11 FPP 302 A 1 HETATM 13 C C12 FPP . . . C 3 30.792 -1.785 6.73 1 13.64 ? C12 FPP 302 A 1 HETATM 14 C C13 FPP . . . C 3 31.367 -1.039 5.618 1 13.41 ? C13 FPP 302 A 1 HETATM 15 C C14 FPP . . . C 3 31.052 0.429 5.401 1 16.27 ? C14 FPP 302 A 1 HETATM 16 C C15 FPP . . . C 3 32.212 -1.773 4.635 1 16.02 ? C15 FPP 302 A 1 HETATM 17 P PA FPP . . . C 3 19.895 1.463 12.018 1 8.78 ? PA FPP 302 A 1 HETATM 18 O O1A FPP . . . C 3 21.017 1.168 13.073 1 8.88 ? O1A FPP 302 A 1 HETATM 19 O O2A FPP . . . C 3 19.371 2.851 12.04 1 10.01 ? O2A FPP 302 A 1 HETATM 20 O O3A FPP . . . C 3 18.671 0.408 12.218 1 9.32 ? O3A FPP 302 A 1 HETATM 21 P PB FPP . . . C 3 17.274 0.739 13.08 1 8.45 ? PB FPP 302 A 1 HETATM 22 O O1B FPP . . . C 3 16.385 -0.56 12.82 1 9.54 ? O1B FPP 302 A 1 HETATM 23 O O2B FPP . . . C 3 17.762 0.844 14.539 1 8.71 ? O2B FPP 302 A 1 HETATM 24 O O3B FPP . . . C 3 16.674 1.992 12.457 1 9.29 ? O3B FPP 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 560 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 24 #