data_4H8Q # _model_server_result.job_id NrVxYARHkttl7OZ5Kw6KoA _model_server_result.datetime_utc '2024-11-05 00:58:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h8q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4H8Q # _exptl.entry_id 4H8Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H8Q _cell.length_a 109.09 _cell.length_b 109.09 _cell.length_c 109.09 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H8Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 114 A TYR 108 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc2 A ND1 HIS 116 A HIS 110 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc3 C ZN ZN . A ZN 202 1_555 D O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 4H8Q _atom_sites.fract_transf_matrix[1][1] 0.009167 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 154 HEM HEM . C 3 ZN A 1 202 1 ZN ZN . D 4 HOH A 1 301 1 HOH HOH . D 4 HOH A 2 302 2 HOH HOH . D 4 HOH A 3 303 3 HOH HOH . D 4 HOH A 4 304 4 HOH HOH . D 4 HOH A 5 305 5 HOH HOH . D 4 HOH A 6 306 6 HOH HOH . D 4 HOH A 7 307 7 HOH HOH . D 4 HOH A 8 308 8 HOH HOH . D 4 HOH A 9 309 9 HOH HOH . D 4 HOH A 10 310 10 HOH HOH . D 4 HOH A 11 311 11 HOH HOH . D 4 HOH A 12 312 12 HOH HOH . D 4 HOH A 13 313 13 HOH HOH . D 4 HOH A 14 314 14 HOH HOH . D 4 HOH A 15 315 15 HOH HOH . D 4 HOH A 16 316 16 HOH HOH . D 4 HOH A 17 317 17 HOH HOH . D 4 HOH A 18 318 18 HOH HOH . D 4 HOH A 19 319 19 HOH HOH . D 4 HOH A 20 320 20 HOH HOH . D 4 HOH A 21 321 21 HOH HOH . D 4 HOH A 22 322 22 HOH HOH . D 4 HOH A 23 323 23 HOH HOH . D 4 HOH A 24 324 24 HOH HOH . D 4 HOH A 25 325 25 HOH HOH . D 4 HOH A 26 326 26 HOH HOH . D 4 HOH A 27 327 27 HOH HOH . D 4 HOH A 28 328 28 HOH HOH . D 4 HOH A 29 329 29 HOH HOH . D 4 HOH A 30 330 30 HOH HOH . D 4 HOH A 31 331 31 HOH HOH . D 4 HOH A 32 332 32 HOH HOH . D 4 HOH A 33 333 33 HOH HOH . D 4 HOH A 34 334 34 HOH HOH . D 4 HOH A 35 335 35 HOH HOH . D 4 HOH A 36 336 36 HOH HOH . D 4 HOH A 37 337 37 HOH HOH . D 4 HOH A 38 338 38 HOH HOH . D 4 HOH A 39 339 39 HOH HOH . D 4 HOH A 40 340 40 HOH HOH . D 4 HOH A 41 341 41 HOH HOH . D 4 HOH A 42 342 42 HOH HOH . D 4 HOH A 43 343 43 HOH HOH . D 4 HOH A 44 344 44 HOH HOH . D 4 HOH A 45 345 45 HOH HOH . D 4 HOH A 46 346 46 HOH HOH . D 4 HOH A 47 347 47 HOH HOH . D 4 HOH A 48 348 48 HOH HOH . D 4 HOH A 49 349 49 HOH HOH . D 4 HOH A 50 350 50 HOH HOH . D 4 HOH A 51 351 51 HOH HOH . D 4 HOH A 52 352 52 HOH HOH . D 4 HOH A 53 353 53 HOH HOH . D 4 HOH A 54 354 54 HOH HOH . D 4 HOH A 55 355 55 HOH HOH . D 4 HOH A 56 356 56 HOH HOH . D 4 HOH A 57 357 57 HOH HOH . D 4 HOH A 58 358 58 HOH HOH . D 4 HOH A 59 359 59 HOH HOH . D 4 HOH A 60 360 60 HOH HOH . D 4 HOH A 61 361 61 HOH HOH . D 4 HOH A 62 362 62 HOH HOH . D 4 HOH A 63 363 63 HOH HOH . D 4 HOH A 64 364 64 HOH HOH . D 4 HOH A 65 365 65 HOH HOH . D 4 HOH A 66 366 66 HOH HOH . D 4 HOH A 67 367 67 HOH HOH . D 4 HOH A 68 368 68 HOH HOH . D 4 HOH A 69 369 69 HOH HOH . D 4 HOH A 70 370 70 HOH HOH . D 4 HOH A 71 371 71 HOH HOH . D 4 HOH A 72 372 72 HOH HOH . D 4 HOH A 73 373 73 HOH HOH . D 4 HOH A 74 374 74 HOH HOH . D 4 HOH A 75 375 75 HOH HOH . D 4 HOH A 76 376 76 HOH HOH . D 4 HOH A 77 377 77 HOH HOH . D 4 HOH A 78 378 78 HOH HOH . D 4 HOH A 79 379 79 HOH HOH . D 4 HOH A 80 380 80 HOH HOH . D 4 HOH A 81 381 81 HOH HOH . D 4 HOH A 82 382 82 HOH HOH . D 4 HOH A 83 383 83 HOH HOH . D 4 HOH A 84 384 84 HOH HOH . D 4 HOH A 85 385 85 HOH HOH . D 4 HOH A 86 386 86 HOH HOH . D 4 HOH A 87 387 87 HOH HOH . D 4 HOH A 88 388 88 HOH HOH . D 4 HOH A 89 389 89 HOH HOH . D 4 HOH A 90 390 90 HOH HOH . D 4 HOH A 91 391 91 HOH HOH . D 4 HOH A 92 392 92 HOH HOH . D 4 HOH A 93 393 93 HOH HOH . D 4 HOH A 94 394 94 HOH HOH . D 4 HOH A 95 395 95 HOH HOH . D 4 HOH A 96 396 96 HOH HOH . D 4 HOH A 97 397 97 HOH HOH . D 4 HOH A 98 398 98 HOH HOH . D 4 HOH A 99 399 99 HOH HOH . D 4 HOH A 100 400 100 HOH HOH . D 4 HOH A 101 401 101 HOH HOH . D 4 HOH A 102 402 102 HOH HOH . D 4 HOH A 103 403 103 HOH HOH . D 4 HOH A 104 404 104 HOH HOH . D 4 HOH A 105 405 105 HOH HOH . D 4 HOH A 106 406 106 HOH HOH . D 4 HOH A 107 407 107 HOH HOH . D 4 HOH A 108 408 108 HOH HOH . D 4 HOH A 109 409 109 HOH HOH . D 4 HOH A 110 410 110 HOH HOH . D 4 HOH A 111 411 111 HOH HOH . D 4 HOH A 112 412 112 HOH HOH . D 4 HOH A 113 413 113 HOH HOH . D 4 HOH A 114 414 114 HOH HOH . D 4 HOH A 115 415 115 HOH HOH . D 4 HOH A 116 416 116 HOH HOH . D 4 HOH A 117 417 117 HOH HOH . D 4 HOH A 118 418 118 HOH HOH . D 4 HOH A 119 419 119 HOH HOH . D 4 HOH A 120 420 120 HOH HOH . D 4 HOH A 121 421 121 HOH HOH . D 4 HOH A 122 422 122 HOH HOH . D 4 HOH A 123 423 123 HOH HOH . D 4 HOH A 124 424 124 HOH HOH . D 4 HOH A 125 425 125 HOH HOH . D 4 HOH A 126 426 126 HOH HOH . D 4 HOH A 127 427 127 HOH HOH . D 4 HOH A 128 428 128 HOH HOH . D 4 HOH A 129 429 129 HOH HOH . D 4 HOH A 130 430 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -1.145 -49.769 -31.996 1 23.25 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 0.466 -52.414 -35.733 1 22.75 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 -2.069 -49.663 -38.847 1 22.11 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 -3.206 -46.657 -35.199 1 20.78 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 -0.503 -50.722 -32.74 1 21.03 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 0.339 -51.783 -32.218 1 20.33 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 0.78 -52.497 -33.259 1 20.3 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 0.228 -51.934 -34.469 1 22.42 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 1.71 -53.728 -33.211 1 21.9 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 0.677 -52.011 -30.722 1 22.49 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 1.584 -50.883 -30.229 1 31.07 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 2.876 -50.798 -31.014 1 35.96 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 3.51 -51.855 -31.259 1 39.74 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 3.305 -49.674 -31.387 1 36.76 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 -0.06 -51.883 -36.889 1 21.91 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 0.236 -52.348 -38.223 1 21.13 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 -0.451 -51.601 -39.084 1 20.98 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 -1.223 -50.627 -38.331 1 21.95 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 1.207 -53.499 -38.578 1 20.16 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 -0.412 -51.777 -40.618 1 24.12 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 -1.03 -50.901 -41.404 1 34.63 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 -2.574 -48.59 -38.138 1 21.06 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 -3.317 -47.474 -38.694 1 19.01 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 -3.636 -46.644 -37.693 1 18.4 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 -3.105 -47.202 -36.458 1 19.28 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 -3.683 -47.303 -40.19 1 22.61 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 -4.428 -45.326 -37.82 1 21.28 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 -4.808 -44.686 -36.715 1 31.07 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 -2.764 -47.238 -34.034 1 18.92 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 -2.975 -46.658 -32.734 1 19.12 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 -2.34 -47.611 -31.742 1 19.93 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 -1.804 -48.69 -32.534 1 19.35 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 -3.689 -45.338 -32.412 1 16.31 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 -2.293 -47.458 -30.211 1 18.56 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 -0.894 -47.049 -29.775 1 20.52 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 -0.467 -45.758 -30.414 1 22.7 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 -1.216 -44.738 -30.349 1 18.31 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 0.657 -45.747 -30.98 1 19.99 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 -0.55 -50.845 -34.11 1 17.31 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 -0.955 -50.829 -36.989 1 18.61 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 -2.458 -48.378 -36.777 1 17.08 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 -2.07 -48.44 -33.883 1 18.38 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 -1.699 -49.751 -35.407 1 20.52 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #