data_4H96 # _model_server_result.job_id psRdOdAW-GVXFxXCOLiWXA _model_server_result.datetime_utc '2024-11-23 21:21:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 4H96 # _exptl.entry_id 4H96 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H96 _cell.length_a 118.665 _cell.length_b 118.665 _cell.length_c 39.331 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 279 n n PA O2A NDP sing 280 n n PA O5B NDP sing 281 n n PA O3 NDP sing 282 n n O2A HOA2 NDP sing 283 n n O5B C5B NDP sing 284 n n C5B C4B NDP sing 285 n n C5B H51A NDP sing 286 n n C5B H52A NDP sing 287 n n C4B O4B NDP sing 288 n n C4B C3B NDP sing 289 n n C4B H4B NDP sing 290 n n O4B C1B NDP sing 291 n n C3B O3B NDP sing 292 n n C3B C2B NDP sing 293 n n C3B H3B NDP sing 294 n n O3B HO3A NDP sing 295 n n C2B O2B NDP sing 296 n n C2B C1B NDP sing 297 n n C2B H2B NDP sing 298 n n O2B P2B NDP sing 299 n n C1B N9A NDP sing 300 n n C1B H1B NDP sing 301 n n N9A C8A NDP sing 302 n y N9A C4A NDP sing 303 n y C8A N7A NDP doub 304 n y C8A H8A NDP sing 305 n n N7A C5A NDP sing 306 n y C5A C6A NDP sing 307 n y C5A C4A NDP doub 308 n y C6A N6A NDP sing 309 n n C6A N1A NDP doub 310 n y N6A H61A NDP sing 311 n n N6A H62A NDP sing 312 n n N1A C2A NDP sing 313 n y C2A N3A NDP doub 314 n y C2A H2A NDP sing 315 n n N3A C4A NDP sing 316 n y O3 PN NDP sing 317 n n PN O1N NDP doub 318 n n PN O2N NDP sing 319 n n PN O5D NDP sing 320 n n O2N H21N NDP sing 321 n n O5D C5D NDP sing 322 n n C5D C4D NDP sing 323 n n C5D H51N NDP sing 324 n n C5D H52N NDP sing 325 n n C4D O4D NDP sing 326 n n C4D C3D NDP sing 327 n n C4D H4D NDP sing 328 n n O4D C1D NDP sing 329 n n C3D O3D NDP sing 330 n n C3D C2D NDP sing 331 n n C3D H3D NDP sing 332 n n O3D HO3N NDP sing 333 n n C2D O2D NDP sing 334 n n C2D C1D NDP sing 335 n n C2D H2D NDP sing 336 n n O2D HO2N NDP sing 337 n n C1D N1N NDP sing 338 n n C1D H1D NDP sing 339 n n N1N C2N NDP sing 340 n n N1N C6N NDP sing 341 n n C2N C3N NDP doub 342 n n C2N H2N NDP sing 343 n n C3N C7N NDP sing 344 n n C3N C4N NDP sing 345 n n C7N O7N NDP doub 346 n n C7N N7N NDP sing 347 n n N7N H71N NDP sing 348 n n N7N H72N NDP sing 349 n n C4N C5N NDP sing 350 n n C4N H41N NDP sing 351 n n C4N H42N NDP sing 352 n n C5N C6N NDP doub 353 n n C5N H5N NDP sing 354 n n C6N H6N NDP sing 355 n n P2B O1X NDP doub 356 n n P2B O2X NDP sing 357 n n P2B O3X NDP sing 358 n n O2X HOP2 NDP sing 359 n n O3X HOP3 NDP sing 360 n n # _atom_sites.entry_id 4H96 _atom_sites.fract_transf_matrix[1][1] 0.008427 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 201 193 NDP NAP . D 3 14Q A 1 202 194 14Q 14Q . E 2 NDP B 1 201 193 NDP NAP . F 3 14Q B 1 202 194 14Q 14Q . G 4 HOH A 1 301 1 HOH HOH . G 4 HOH A 2 302 31 HOH HOH . G 4 HOH A 3 303 34 HOH HOH . G 4 HOH A 4 304 39 HOH HOH . H 4 HOH B 1 301 7 HOH HOH . H 4 HOH B 2 302 10 HOH HOH . H 4 HOH B 3 303 27 HOH HOH . H 4 HOH B 4 304 42 HOH HOH . H 4 HOH B 5 305 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . E 2 -20.863 -8.282 7.752 1 45.06 ? PA NDP 201 B 1 HETATM 2 O O1A NDP . . . E 2 -21.556 -9.589 7.698 1 45.07 ? O1A NDP 201 B 1 HETATM 3 O O2A NDP . . . E 2 -19.461 -8.44 8.195 1 45.02 ? O2A NDP 201 B 1 HETATM 4 O O5B NDP . . . E 2 -20.933 -7.547 6.32 1 45.02 ? O5B NDP 201 B 1 HETATM 5 C C5B NDP . . . E 2 -20.942 -8.285 5.12 1 44.94 ? C5B NDP 201 B 1 HETATM 6 C C4B NDP . . . E 2 -19.682 -7.973 4.325 1 44.87 ? C4B NDP 201 B 1 HETATM 7 O O4B NDP . . . E 2 -18.954 -9.163 4.088 1 44.83 ? O4B NDP 201 B 1 HETATM 8 C C3B NDP . . . E 2 -20.022 -7.363 2.976 1 44.83 ? C3B NDP 201 B 1 HETATM 9 O O3B NDP . . . E 2 -19.667 -5.999 2.963 1 44.87 ? O3B NDP 201 B 1 HETATM 10 C C2B NDP . . . E 2 -19.231 -8.158 1.954 1 44.82 ? C2B NDP 201 B 1 HETATM 11 O O2B NDP . . . E 2 -18.155 -7.406 1.438 1 44.75 ? O2B NDP 201 B 1 HETATM 12 C C1B NDP . . . E 2 -18.691 -9.362 2.712 1 44.82 ? C1B NDP 201 B 1 HETATM 13 N N9A NDP . . . E 2 -19.349 -10.605 2.255 1 44.85 ? N9A NDP 201 B 1 HETATM 14 C C8A NDP . . . E 2 -20.669 -10.941 2.422 1 44.85 ? C8A NDP 201 B 1 HETATM 15 N N7A NDP . . . E 2 -20.882 -12.156 1.869 1 44.83 ? N7A NDP 201 B 1 HETATM 16 C C5A NDP . . . E 2 -19.719 -12.606 1.352 1 44.83 ? C5A NDP 201 B 1 HETATM 17 C C6A NDP . . . E 2 -19.381 -13.779 0.681 1 44.84 ? C6A NDP 201 B 1 HETATM 18 N N6A NDP . . . E 2 -20.303 -14.709 0.449 1 44.83 ? N6A NDP 201 B 1 HETATM 19 N N1A NDP . . . E 2 -18.079 -13.973 0.256 1 44.84 ? N1A NDP 201 B 1 HETATM 20 C C2A NDP . . . E 2 -17.122 -13.003 0.499 1 44.83 ? C2A NDP 201 B 1 HETATM 21 N N3A NDP . . . E 2 -17.467 -11.841 1.166 1 44.83 ? N3A NDP 201 B 1 HETATM 22 C C4A NDP . . . E 2 -18.744 -11.642 1.587 1 44.82 ? C4A NDP 201 B 1 HETATM 23 O O3 NDP . . . E 2 -21.664 -7.284 8.729 1 45.11 ? O3 NDP 201 B 1 HETATM 24 P PN NDP . . . E 2 -23.241 -7.008 8.898 1 45.18 ? PN NDP 201 B 1 HETATM 25 O O1N NDP . . . E 2 -23.461 -5.543 8.888 1 45.19 ? O1N NDP 201 B 1 HETATM 26 O O2N NDP . . . E 2 -23.968 -7.862 7.932 1 45.15 ? O2N NDP 201 B 1 HETATM 27 O O5D NDP . . . E 2 -23.544 -7.56 10.381 1 45.21 ? O5D NDP 201 B 1 HETATM 28 C C5D NDP . . . E 2 -22.876 -7.039 11.509 1 45.32 ? C5D NDP 201 B 1 HETATM 29 C C4D NDP . . . E 2 -23.817 -7.052 12.707 1 45.39 ? C4D NDP 201 B 1 HETATM 30 O O4D NDP . . . E 2 -23.751 -8.306 13.361 1 45.42 ? O4D NDP 201 B 1 HETATM 31 C C3D NDP . . . E 2 -23.448 -5.974 13.716 1 45.43 ? C3D NDP 201 B 1 HETATM 32 O O3D NDP . . . E 2 -24.537 -5.098 13.887 1 45.42 ? O3D NDP 201 B 1 HETATM 33 C C2D NDP . . . E 2 -23.135 -6.715 15.004 1 45.47 ? C2D NDP 201 B 1 HETATM 34 O O2D NDP . . . E 2 -23.845 -6.174 16.095 1 45.52 ? O2D NDP 201 B 1 HETATM 35 C C1D NDP . . . E 2 -23.559 -8.157 14.757 1 45.47 ? C1D NDP 201 B 1 HETATM 36 N N1N NDP . . . E 2 -22.545 -9.106 15.267 1 45.51 ? N1N NDP 201 B 1 HETATM 37 C C2N NDP . . . E 2 -22.797 -9.778 16.435 1 45.55 ? C2N NDP 201 B 1 HETATM 38 C C3N NDP . . . E 2 -21.867 -10.681 16.95 1 45.59 ? C3N NDP 201 B 1 HETATM 39 C C7N NDP . . . E 2 -22.2 -11.502 18.165 1 45.62 ? C7N NDP 201 B 1 HETATM 40 O O7N NDP . . . E 2 -21.735 -12.83 18.252 1 45.66 ? O7N NDP 201 B 1 HETATM 41 N N7N NDP . . . E 2 -22.93 -10.957 19.139 1 45.64 ? N7N NDP 201 B 1 HETATM 42 C C4N NDP . . . E 2 -20.671 -10.899 16.266 1 45.57 ? C4N NDP 201 B 1 HETATM 43 C C5N NDP . . . E 2 -20.421 -10.213 15.078 1 45.55 ? C5N NDP 201 B 1 HETATM 44 C C6N NDP . . . E 2 -21.369 -9.317 14.587 1 45.54 ? C6N NDP 201 B 1 HETATM 45 P P2B NDP . . . E 2 -18.271 -6.651 0.02 1 44.69 ? P2B NDP 201 B 1 HETATM 46 O O1X NDP . . . E 2 -16.945 -5.992 -0.275 1 44.73 ? O1X NDP 201 B 1 HETATM 47 O O2X NDP . . . E 2 -18.595 -7.645 -1.069 1 44.78 ? O2X NDP 201 B 1 HETATM 48 O O3X NDP . . . E 2 -19.354 -5.6 0.086 1 44.72 ? O3X NDP 201 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #