data_4H97
#
_model_server_result.job_id            lr1-ujjeHD_8TdM9wC5T-g 
_model_server_result.datetime_utc      '2024-11-23 21:24:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4h97 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    4H97 
#
_exptl.entry_id    4H97 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              372.463 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5-[(3R)-3-(5-methoxy-4'-methylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4H97 
_cell.length_a            118 
_cell.length_b            118 
_cell.length_c            39.116 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4H97 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,H 1 1 
B,E,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C23 H24 N4 O' 
_chem_comp.formula_weight    372.463 
_chem_comp.id                53S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5-[(3R)-3-(5-methoxy-4'-methylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 C5 53S doub 1 n y 
C6 C10 53S sing 2 n n 
C6 C1 53S sing 3 n y 
C5 C8 53S sing 4 n n 
C5 N4 53S sing 5 n y 
C2 O17 53S sing 6 n n 
C20 C21 53S doub 7 n y 
C20 C25 53S sing 8 n y 
C21 C22 53S sing 9 n y 
C22 C26 53S sing 10 n n 
C22 C23 53S doub 11 n y 
C23 C24 53S sing 12 n y 
C24 C25 53S doub 13 n y 
C25 C18 53S sing 14 n y 
C18 C19 53S doub 15 n y 
C18 C17 53S sing 16 n y 
C19 C14 53S sing 17 n y 
C17 C16 53S doub 18 n y 
C16 O17 53S sing 19 n n 
C16 C15 53S sing 20 n y 
C15 C14 53S doub 21 n y 
C14 C12 53S sing 22 n n 
C12 C13 53S sing 23 n n 
C12 C11 53S sing 24 n n 
C11 C10 53S trip 25 n n 
N4 C3 53S doub 26 n y 
C3 N7 53S sing 27 n n 
C3 N2 53S sing 28 n y 
N2 C1 53S doub 29 n y 
C1 N9 53S sing 30 n n 
C2 H2 53S sing 31 n n 
C2 H2A 53S sing 32 n n 
C2 H2B 53S sing 33 n n 
C20 H20 53S sing 34 n n 
C21 H21 53S sing 35 n n 
C26 H26 53S sing 36 n n 
C26 H26A 53S sing 37 n n 
C26 H26B 53S sing 38 n n 
C23 H23 53S sing 39 n n 
C24 H24 53S sing 40 n n 
C19 H19 53S sing 41 n n 
C17 H17 53S sing 42 n n 
C15 H15 53S sing 43 n n 
C12 H12 53S sing 44 n n 
C13 H13 53S sing 45 n n 
C13 H13A 53S sing 46 n n 
C13 H13B 53S sing 47 n n 
C8 H8 53S sing 48 n n 
C8 H8A 53S sing 49 n n 
C8 H8B 53S sing 50 n n 
N7 HN7 53S sing 51 n n 
N7 HN7A 53S sing 52 n n 
N9 HN9 53S sing 53 n n 
N9 HN9A 53S sing 54 n n 
#
_atom_sites.entry_id                     4H97 
_atom_sites.fract_transf_matrix[1][1]    0.008475 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008475 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025565 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 201 193 NDP NAP . 
D 3 53S A 1 202 229 53S 53S . 
E 2 NDP B 1 201 193 NDP NAP . 
F 3 53S B 1 202 229 53S 53S . 
G 4 GOL B 1 203 1 GOL GOL . 
H 5 HOH A 1 301 10 HOH HOH . 
H 5 HOH A 2 302 12 HOH HOH . 
H 5 HOH A 3 303 16 HOH HOH . 
H 5 HOH A 4 304 25 HOH HOH . 
H 5 HOH A 5 305 57 HOH HOH . 
H 5 HOH A 6 306 60 HOH HOH . 
H 5 HOH A 7 307 66 HOH HOH . 
H 5 HOH A 8 308 69 HOH HOH . 
H 5 HOH A 9 309 70 HOH HOH . 
H 5 HOH A 10 310 71 HOH HOH . 
H 5 HOH A 11 311 72 HOH HOH . 
H 5 HOH A 12 312 73 HOH HOH . 
H 5 HOH A 13 313 74 HOH HOH . 
I 5 HOH B 1 301 1 HOH HOH . 
I 5 HOH B 2 302 21 HOH HOH . 
I 5 HOH B 3 303 31 HOH HOH . 
I 5 HOH B 4 304 35 HOH HOH . 
I 5 HOH B 5 305 44 HOH HOH . 
I 5 HOH B 6 306 56 HOH HOH . 
I 5 HOH B 7 307 68 HOH HOH . 
I 5 HOH B 8 308 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C6 53S . . . D 3 16.996 45.134 -2.132 1 37.36 ? C6 53S 202 A 1 
HETATM 2 C C5 53S . . . D 3 17.1 45.214 -3.519 1 36.88 ? C5 53S 202 A 1 
HETATM 3 C C2 53S . . . D 3 15.725 53.324 -1.01 1 44.87 ? C2 53S 202 A 1 
HETATM 4 C C20 53S . . . D 3 12.454 48.384 -4.32 1 46.08 ? C20 53S 202 A 1 
HETATM 5 C C21 53S . . . D 3 11.557 47.974 -5.305 1 46.46 ? C21 53S 202 A 1 
HETATM 6 C C22 53S . . . D 3 10.309 48.587 -5.412 1 46.5 ? C22 53S 202 A 1 
HETATM 7 C C26 53S . . . D 3 9.334 48.136 -6.505 1 46.41 ? C26 53S 202 A 1 
HETATM 8 C C23 53S . . . D 3 9.956 49.606 -4.527 1 46.23 ? C23 53S 202 A 1 
HETATM 9 C C24 53S . . . D 3 10.851 50.011 -3.535 1 45.95 ? C24 53S 202 A 1 
HETATM 10 C C25 53S . . . D 3 12.105 49.399 -3.424 1 45.68 ? C25 53S 202 A 1 
HETATM 11 C C18 53S . . . D 3 13.017 49.8 -2.443 1 44.82 ? C18 53S 202 A 1 
HETATM 12 C C19 53S . . . D 3 13.729 48.849 -1.704 1 43.89 ? C19 53S 202 A 1 
HETATM 13 C C17 53S . . . D 3 13.237 51.162 -2.209 1 44.42 ? C17 53S 202 A 1 
HETATM 14 C C16 53S . . . D 3 14.155 51.576 -1.241 1 44.4 ? C16 53S 202 A 1 
HETATM 15 O O17 53S . . . D 3 14.344 52.914 -1.018 1 44.66 ? O17 53S 202 A 1 
HETATM 16 C C15 53S . . . D 3 14.854 50.614 -0.503 1 43.56 ? C15 53S 202 A 1 
HETATM 17 C C14 53S . . . D 3 14.653 49.254 -0.734 1 42.91 ? C14 53S 202 A 1 
HETATM 18 C C12 53S . . . D 3 15.451 48.24 0.111 1 41.49 ? C12 53S 202 A 1 
HETATM 19 C C13 53S . . . D 3 14.541 47.658 1.196 1 41.43 ? C13 53S 202 A 1 
HETATM 20 C C11 53S . . . D 3 15.999 47.136 -0.696 1 40.08 ? C11 53S 202 A 1 
HETATM 21 C C10 53S . . . D 3 16.456 46.222 -1.37 1 38.32 ? C10 53S 202 A 1 
HETATM 22 C C8 53S . . . D 3 16.643 46.465 -4.283 1 36.78 ? C8 53S 202 A 1 
HETATM 23 N N4 53S . . . D 3 17.613 44.175 -4.198 1 36.42 ? N4 53S 202 A 1 
HETATM 24 C C3 53S . . . D 3 18.025 43.062 -3.569 1 36.65 ? C3 53S 202 A 1 
HETATM 25 N N7 53S . . . D 3 18.529 42.054 -4.276 1 36.42 ? N7 53S 202 A 1 
HETATM 26 N N2 53S . . . D 3 17.932 42.959 -2.232 1 36.59 ? N2 53S 202 A 1 
HETATM 27 C C1 53S . . . D 3 17.433 43.966 -1.499 1 36.81 ? C1 53S 202 A 1 
HETATM 28 N N9 53S . . . D 3 17.362 43.831 -0.181 1 36.5 ? N9 53S 202 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#