data_4H97
#
_model_server_result.job_id            z3Q0gF7Owy1Kf_aEMhC1WQ 
_model_server_result.datetime_utc      '2024-11-23 21:20:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4h97 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":202}' 
#
_entry.id    4H97 
#
_exptl.entry_id    4H97 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              372.463 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5-[(3R)-3-(5-methoxy-4'-methylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4H97 
_cell.length_a            118 
_cell.length_b            118 
_cell.length_c            39.116 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4H97 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,H 1 1 
B,E,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C23 H24 N4 O' 
_chem_comp.formula_weight    372.463 
_chem_comp.id                53S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5-[(3R)-3-(5-methoxy-4'-methylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 C5 53S doub 1 n y 
C6 C10 53S sing 2 n n 
C6 C1 53S sing 3 n y 
C5 C8 53S sing 4 n n 
C5 N4 53S sing 5 n y 
C2 O17 53S sing 6 n n 
C20 C21 53S doub 7 n y 
C20 C25 53S sing 8 n y 
C21 C22 53S sing 9 n y 
C22 C26 53S sing 10 n n 
C22 C23 53S doub 11 n y 
C23 C24 53S sing 12 n y 
C24 C25 53S doub 13 n y 
C25 C18 53S sing 14 n y 
C18 C19 53S doub 15 n y 
C18 C17 53S sing 16 n y 
C19 C14 53S sing 17 n y 
C17 C16 53S doub 18 n y 
C16 O17 53S sing 19 n n 
C16 C15 53S sing 20 n y 
C15 C14 53S doub 21 n y 
C14 C12 53S sing 22 n n 
C12 C13 53S sing 23 n n 
C12 C11 53S sing 24 n n 
C11 C10 53S trip 25 n n 
N4 C3 53S doub 26 n y 
C3 N7 53S sing 27 n n 
C3 N2 53S sing 28 n y 
N2 C1 53S doub 29 n y 
C1 N9 53S sing 30 n n 
C2 H2 53S sing 31 n n 
C2 H2A 53S sing 32 n n 
C2 H2B 53S sing 33 n n 
C20 H20 53S sing 34 n n 
C21 H21 53S sing 35 n n 
C26 H26 53S sing 36 n n 
C26 H26A 53S sing 37 n n 
C26 H26B 53S sing 38 n n 
C23 H23 53S sing 39 n n 
C24 H24 53S sing 40 n n 
C19 H19 53S sing 41 n n 
C17 H17 53S sing 42 n n 
C15 H15 53S sing 43 n n 
C12 H12 53S sing 44 n n 
C13 H13 53S sing 45 n n 
C13 H13A 53S sing 46 n n 
C13 H13B 53S sing 47 n n 
C8 H8 53S sing 48 n n 
C8 H8A 53S sing 49 n n 
C8 H8B 53S sing 50 n n 
N7 HN7 53S sing 51 n n 
N7 HN7A 53S sing 52 n n 
N9 HN9 53S sing 53 n n 
N9 HN9A 53S sing 54 n n 
#
_atom_sites.entry_id                     4H97 
_atom_sites.fract_transf_matrix[1][1]    0.008475 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008475 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025565 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 201 193 NDP NAP . 
D 3 53S A 1 202 229 53S 53S . 
E 2 NDP B 1 201 193 NDP NAP . 
F 3 53S B 1 202 229 53S 53S . 
G 4 GOL B 1 203 1 GOL GOL . 
H 5 HOH A 1 301 10 HOH HOH . 
H 5 HOH A 2 302 12 HOH HOH . 
H 5 HOH A 3 303 16 HOH HOH . 
H 5 HOH A 4 304 25 HOH HOH . 
H 5 HOH A 5 305 57 HOH HOH . 
H 5 HOH A 6 306 60 HOH HOH . 
H 5 HOH A 7 307 66 HOH HOH . 
H 5 HOH A 8 308 69 HOH HOH . 
H 5 HOH A 9 309 70 HOH HOH . 
H 5 HOH A 10 310 71 HOH HOH . 
H 5 HOH A 11 311 72 HOH HOH . 
H 5 HOH A 12 312 73 HOH HOH . 
H 5 HOH A 13 313 74 HOH HOH . 
I 5 HOH B 1 301 1 HOH HOH . 
I 5 HOH B 2 302 21 HOH HOH . 
I 5 HOH B 3 303 31 HOH HOH . 
I 5 HOH B 4 304 35 HOH HOH . 
I 5 HOH B 5 305 44 HOH HOH . 
I 5 HOH B 6 306 56 HOH HOH . 
I 5 HOH B 7 307 68 HOH HOH . 
I 5 HOH B 8 308 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C6 53S . . . F 3 -12.265 40.983 -19.449 1 36.38 ? C6 53S 202 B 1 
HETATM 2 C C5 53S . . . F 3 -12.268 40.861 -20.838 1 36.27 ? C5 53S 202 B 1 
HETATM 3 C C2 53S . . . F 3 -4.01 41.747 -17.977 1 35.86 ? C2 53S 202 B 1 
HETATM 4 C C20 53S . . . F 3 -8.586 45.5 -21.691 1 35.81 ? C20 53S 202 B 1 
HETATM 5 C C21 53S . . . F 3 -8.882 46.505 -22.614 1 35.9 ? C21 53S 202 B 1 
HETATM 6 C C22 53S . . . F 3 -8.177 47.711 -22.588 1 35.67 ? C22 53S 202 B 1 
HETATM 7 C C26 53S . . . F 3 -8.497 48.811 -23.6 1 35.47 ? C26 53S 202 B 1 
HETATM 8 C C23 53S . . . F 3 -7.178 47.914 -21.638 1 35.44 ? C23 53S 202 B 1 
HETATM 9 C C24 53S . . . F 3 -6.887 46.91 -20.717 1 35.73 ? C24 53S 202 B 1 
HETATM 10 C C25 53S . . . F 3 -7.586 45.697 -20.735 1 35.5 ? C25 53S 202 B 1 
HETATM 11 C C18 53S . . . F 3 -7.273 44.707 -19.799 1 35.49 ? C18 53S 202 B 1 
HETATM 12 C C19 53S . . . F 3 -8.279 44.046 -19.081 1 35.72 ? C19 53S 202 B 1 
HETATM 13 C C17 53S . . . F 3 -5.933 44.376 -19.568 1 35.55 ? C17 53S 202 B 1 
HETATM 14 C C16 53S . . . F 3 -5.59 43.396 -18.637 1 35.73 ? C16 53S 202 B 1 
HETATM 15 O O17 53S . . . F 3 -4.272 43.095 -18.426 1 36.04 ? O17 53S 202 B 1 
HETATM 16 C C15 53S . . . F 3 -6.601 42.746 -17.929 1 35.7 ? C15 53S 202 B 1 
HETATM 17 C C14 53S . . . F 3 -7.941 43.056 -18.149 1 35.77 ? C14 53S 202 B 1 
HETATM 18 C C12 53S . . . F 3 -8.985 42.289 -17.312 1 35.53 ? C12 53S 202 B 1 
HETATM 19 C C13 53S . . . F 3 -9.498 43.205 -16.199 1 35.67 ? C13 53S 202 B 1 
HETATM 20 C C11 53S . . . F 3 -10.149 41.825 -18.086 1 35.67 ? C11 53S 202 B 1 
HETATM 21 C C10 53S . . . F 3 -11.116 41.439 -18.721 1 35.72 ? C10 53S 202 B 1 
HETATM 22 C C8 53S . . . F 3 -11.034 41.211 -21.681 1 36.45 ? C8 53S 202 B 1 
HETATM 23 N N4 53S . . . F 3 -13.382 40.429 -21.455 1 36.8 ? N4 53S 202 B 1 
HETATM 24 C C3 53S . . . F 3 -14.488 40.112 -20.758 1 36.94 ? C3 53S 202 B 1 
HETATM 25 N N7 53S . . . F 3 -15.574 39.684 -21.394 1 37.05 ? N7 53S 202 B 1 
HETATM 26 N N2 53S . . . F 3 -14.506 40.223 -19.419 1 36.89 ? N2 53S 202 B 1 
HETATM 27 C C1 53S . . . F 3 -13.423 40.647 -18.749 1 36.32 ? C1 53S 202 B 1 
HETATM 28 N N9 53S . . . F 3 -13.474 40.745 -17.424 1 36.31 ? N9 53S 202 B 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#