data_4H98 # _model_server_result.job_id XFipTFn7LoABT8JvhjEHJw _model_server_result.datetime_utc '2024-11-06 03:15:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4H98 # _exptl.entry_id 4H98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H98 _cell.length_a 42.706 _cell.length_b 42.706 _cell.length_c 230.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 292 n n PA O2A NDP sing 293 n n PA O5B NDP sing 294 n n PA O3 NDP sing 295 n n O2A HOA2 NDP sing 296 n n O5B C5B NDP sing 297 n n C5B C4B NDP sing 298 n n C5B H51A NDP sing 299 n n C5B H52A NDP sing 300 n n C4B O4B NDP sing 301 n n C4B C3B NDP sing 302 n n C4B H4B NDP sing 303 n n O4B C1B NDP sing 304 n n C3B O3B NDP sing 305 n n C3B C2B NDP sing 306 n n C3B H3B NDP sing 307 n n O3B HO3A NDP sing 308 n n C2B O2B NDP sing 309 n n C2B C1B NDP sing 310 n n C2B H2B NDP sing 311 n n O2B P2B NDP sing 312 n n C1B N9A NDP sing 313 n n C1B H1B NDP sing 314 n n N9A C8A NDP sing 315 n y N9A C4A NDP sing 316 n y C8A N7A NDP doub 317 n y C8A H8A NDP sing 318 n n N7A C5A NDP sing 319 n y C5A C6A NDP sing 320 n y C5A C4A NDP doub 321 n y C6A N6A NDP sing 322 n n C6A N1A NDP doub 323 n y N6A H61A NDP sing 324 n n N6A H62A NDP sing 325 n n N1A C2A NDP sing 326 n y C2A N3A NDP doub 327 n y C2A H2A NDP sing 328 n n N3A C4A NDP sing 329 n y O3 PN NDP sing 330 n n PN O1N NDP doub 331 n n PN O2N NDP sing 332 n n PN O5D NDP sing 333 n n O2N H21N NDP sing 334 n n O5D C5D NDP sing 335 n n C5D C4D NDP sing 336 n n C5D H51N NDP sing 337 n n C5D H52N NDP sing 338 n n C4D O4D NDP sing 339 n n C4D C3D NDP sing 340 n n C4D H4D NDP sing 341 n n O4D C1D NDP sing 342 n n C3D O3D NDP sing 343 n n C3D C2D NDP sing 344 n n C3D H3D NDP sing 345 n n O3D HO3N NDP sing 346 n n C2D O2D NDP sing 347 n n C2D C1D NDP sing 348 n n C2D H2D NDP sing 349 n n O2D HO2N NDP sing 350 n n C1D N1N NDP sing 351 n n C1D H1D NDP sing 352 n n N1N C2N NDP sing 353 n n N1N C6N NDP sing 354 n n C2N C3N NDP doub 355 n n C2N H2N NDP sing 356 n n C3N C7N NDP sing 357 n n C3N C4N NDP sing 358 n n C7N O7N NDP doub 359 n n C7N N7N NDP sing 360 n n N7N H71N NDP sing 361 n n N7N H72N NDP sing 362 n n C4N C5N NDP sing 363 n n C4N H41N NDP sing 364 n n C4N H42N NDP sing 365 n n C5N C6N NDP doub 366 n n C5N H5N NDP sing 367 n n C6N H6N NDP sing 368 n n P2B O1X NDP doub 369 n n P2B O2X NDP sing 370 n n P2B O3X NDP sing 371 n n O2X HOP2 NDP sing 372 n n O3X HOP3 NDP sing 373 n n # _atom_sites.entry_id 4H98 _atom_sites.fract_transf_matrix[1][1] 0.023416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 301 193 NDP NAP . D 3 14Q A 1 302 194 14Q 14Q . E 2 NDP B 1 301 193 NDP NAP . F 3 14Q B 1 302 194 14Q 14Q . G 4 HOH A 1 401 3 HOH HOH . G 4 HOH A 2 402 5 HOH HOH . G 4 HOH A 3 403 6 HOH HOH . G 4 HOH A 4 404 7 HOH HOH . G 4 HOH A 5 405 8 HOH HOH . G 4 HOH A 6 406 10 HOH HOH . G 4 HOH A 7 407 11 HOH HOH . G 4 HOH A 8 408 13 HOH HOH . G 4 HOH A 9 409 23 HOH HOH . G 4 HOH A 10 410 27 HOH HOH . G 4 HOH A 11 411 28 HOH HOH . G 4 HOH A 12 412 36 HOH HOH . G 4 HOH A 13 413 43 HOH HOH . G 4 HOH A 14 414 46 HOH HOH . G 4 HOH A 15 415 49 HOH HOH . H 4 HOH B 1 401 1 HOH HOH . H 4 HOH B 2 402 2 HOH HOH . H 4 HOH B 3 403 9 HOH HOH . H 4 HOH B 4 404 12 HOH HOH . H 4 HOH B 5 405 17 HOH HOH . H 4 HOH B 6 406 18 HOH HOH . H 4 HOH B 7 407 26 HOH HOH . H 4 HOH B 8 408 38 HOH HOH . H 4 HOH B 9 409 41 HOH HOH . H 4 HOH B 10 410 42 HOH HOH . H 4 HOH B 11 411 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 17.129 1.697 2.711 1 32.56 ? PA NDP 301 A 1 HETATM 2 O O1A NDP . . . C 2 17.881 0.785 3.65 1 32.95 ? O1A NDP 301 A 1 HETATM 3 O O2A NDP . . . C 2 15.676 1.439 2.405 1 32.63 ? O2A NDP 301 A 1 HETATM 4 O O5B NDP . . . C 2 17.289 3.216 3.217 1 32.74 ? O5B NDP 301 A 1 HETATM 5 C C5B NDP . . . C 2 17.558 3.524 4.582 1 32.89 ? C5B NDP 301 A 1 HETATM 6 C C4B NDP . . . C 2 16.373 4.27 5.174 1 32.98 ? C4B NDP 301 A 1 HETATM 7 O O4B NDP . . . C 2 15.692 3.427 6.108 1 33.14 ? O4B NDP 301 A 1 HETATM 8 C C3B NDP . . . C 2 16.799 5.514 5.943 1 33.09 ? C3B NDP 301 A 1 HETATM 9 O O3B NDP . . . C 2 16.738 6.688 5.125 1 32.75 ? O3B NDP 301 A 1 HETATM 10 C C2B NDP . . . C 2 15.845 5.575 7.124 1 33.27 ? C2B NDP 301 A 1 HETATM 11 O O2B NDP . . . C 2 14.665 6.307 6.794 1 33.41 ? O2B NDP 301 A 1 HETATM 12 C C1B NDP . . . C 2 15.444 4.12 7.34 1 33.16 ? C1B NDP 301 A 1 HETATM 13 N N9A NDP . . . C 2 16.216 3.5 8.452 1 32.84 ? N9A NDP 301 A 1 HETATM 14 C C8A NDP . . . C 2 17.491 3.065 8.388 1 32.88 ? C8A NDP 301 A 1 HETATM 15 N N7A NDP . . . C 2 17.901 2.548 9.573 1 32.87 ? N7A NDP 301 A 1 HETATM 16 C C5A NDP . . . C 2 16.868 2.647 10.431 1 32.94 ? C5A NDP 301 A 1 HETATM 17 C C6A NDP . . . C 2 16.616 2.291 11.853 1 32.51 ? C6A NDP 301 A 1 HETATM 18 N N6A NDP . . . C 2 17.577 1.709 12.607 1 32.44 ? N6A NDP 301 A 1 HETATM 19 N N1A NDP . . . C 2 15.396 2.562 12.369 1 32.45 ? N1A NDP 301 A 1 HETATM 20 C C2A NDP . . . C 2 14.426 3.138 11.63 1 32.71 ? C2A NDP 301 A 1 HETATM 21 N N3A NDP . . . C 2 14.585 3.487 10.336 1 32.91 ? N3A NDP 301 A 1 HETATM 22 C C4A NDP . . . C 2 15.76 3.273 9.687 1 32.86 ? C4A NDP 301 A 1 HETATM 23 O O3 NDP . . . C 2 17.885 1.695 1.292 1 33.42 ? O3 NDP 301 A 1 HETATM 24 P PN NDP . . . C 2 19.282 2.457 1.037 1 33.63 ? PN NDP 301 A 1 HETATM 25 O O1N NDP . . . C 2 19.002 3.935 0.924 1 33.78 ? O1N NDP 301 A 1 HETATM 26 O O2N NDP . . . C 2 20.306 1.955 2.028 1 33.66 ? O2N NDP 301 A 1 HETATM 27 O O5D NDP . . . C 2 19.678 1.922 -0.429 1 33.55 ? O5D NDP 301 A 1 HETATM 28 C C5D NDP . . . C 2 18.67 1.723 -1.419 1 33.85 ? C5D NDP 301 A 1 HETATM 29 C C4D NDP . . . C 2 19.215 0.803 -2.501 1 34.07 ? C4D NDP 301 A 1 HETATM 30 O O4D NDP . . . C 2 19.144 -0.565 -2.087 1 34.05 ? O4D NDP 301 A 1 HETATM 31 C C3D NDP . . . C 2 18.414 0.922 -3.785 1 34.28 ? C3D NDP 301 A 1 HETATM 32 O O3D NDP . . . C 2 19.304 1.339 -4.827 1 34.24 ? O3D NDP 301 A 1 HETATM 33 C C2D NDP . . . C 2 17.867 -0.475 -4.036 1 34.47 ? C2D NDP 301 A 1 HETATM 34 O O2D NDP . . . C 2 17.929 -0.845 -5.414 1 34.93 ? O2D NDP 301 A 1 HETATM 35 C C1D NDP . . . C 2 18.77 -1.372 -3.204 1 34.21 ? C1D NDP 301 A 1 HETATM 36 N N1N NDP . . . C 2 18.14 -2.642 -2.815 1 34.26 ? N1N NDP 301 A 1 HETATM 37 C C2N NDP . . . C 2 18.664 -3.773 -3.325 1 34.44 ? C2N NDP 301 A 1 HETATM 38 C C3N NDP . . . C 2 18.14 -5.03 -3.017 1 34.21 ? C3N NDP 301 A 1 HETATM 39 C C7N NDP . . . C 2 18.753 -6.275 -3.607 1 34.22 ? C7N NDP 301 A 1 HETATM 40 O O7N NDP . . . C 2 18.718 -7.321 -2.981 1 34.64 ? O7N NDP 301 A 1 HETATM 41 N N7N NDP . . . C 2 19.334 -6.222 -4.805 1 34.07 ? N7N NDP 301 A 1 HETATM 42 C C4N NDP . . . C 2 17.047 -5.104 -2.153 1 33.99 ? C4N NDP 301 A 1 HETATM 43 C C5N NDP . . . C 2 16.518 -3.923 -1.631 1 33.8 ? C5N NDP 301 A 1 HETATM 44 C C6N NDP . . . C 2 17.085 -2.694 -1.976 1 33.91 ? C6N NDP 301 A 1 HETATM 45 P P2B NDP . . . C 2 14.425 7.844 7.211 1 33.76 ? P2B NDP 301 A 1 HETATM 46 O O1X NDP . . . C 2 15.549 8.607 6.548 1 33.34 ? O1X NDP 301 A 1 HETATM 47 O O2X NDP . . . C 2 13.057 8.136 6.641 1 33.84 ? O2X NDP 301 A 1 HETATM 48 O O3X NDP . . . C 2 14.476 7.839 8.722 1 33.77 ? O3X NDP 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #