data_4H98 # _model_server_result.job_id atVXAHpLlbilmoSl0Y9w5A _model_server_result.datetime_utc '2024-11-06 03:09:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4H98 # _exptl.entry_id 4H98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H98 _cell.length_a 42.706 _cell.length_b 42.706 _cell.length_c 230.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 292 n n PA O2A NDP sing 293 n n PA O5B NDP sing 294 n n PA O3 NDP sing 295 n n O2A HOA2 NDP sing 296 n n O5B C5B NDP sing 297 n n C5B C4B NDP sing 298 n n C5B H51A NDP sing 299 n n C5B H52A NDP sing 300 n n C4B O4B NDP sing 301 n n C4B C3B NDP sing 302 n n C4B H4B NDP sing 303 n n O4B C1B NDP sing 304 n n C3B O3B NDP sing 305 n n C3B C2B NDP sing 306 n n C3B H3B NDP sing 307 n n O3B HO3A NDP sing 308 n n C2B O2B NDP sing 309 n n C2B C1B NDP sing 310 n n C2B H2B NDP sing 311 n n O2B P2B NDP sing 312 n n C1B N9A NDP sing 313 n n C1B H1B NDP sing 314 n n N9A C8A NDP sing 315 n y N9A C4A NDP sing 316 n y C8A N7A NDP doub 317 n y C8A H8A NDP sing 318 n n N7A C5A NDP sing 319 n y C5A C6A NDP sing 320 n y C5A C4A NDP doub 321 n y C6A N6A NDP sing 322 n n C6A N1A NDP doub 323 n y N6A H61A NDP sing 324 n n N6A H62A NDP sing 325 n n N1A C2A NDP sing 326 n y C2A N3A NDP doub 327 n y C2A H2A NDP sing 328 n n N3A C4A NDP sing 329 n y O3 PN NDP sing 330 n n PN O1N NDP doub 331 n n PN O2N NDP sing 332 n n PN O5D NDP sing 333 n n O2N H21N NDP sing 334 n n O5D C5D NDP sing 335 n n C5D C4D NDP sing 336 n n C5D H51N NDP sing 337 n n C5D H52N NDP sing 338 n n C4D O4D NDP sing 339 n n C4D C3D NDP sing 340 n n C4D H4D NDP sing 341 n n O4D C1D NDP sing 342 n n C3D O3D NDP sing 343 n n C3D C2D NDP sing 344 n n C3D H3D NDP sing 345 n n O3D HO3N NDP sing 346 n n C2D O2D NDP sing 347 n n C2D C1D NDP sing 348 n n C2D H2D NDP sing 349 n n O2D HO2N NDP sing 350 n n C1D N1N NDP sing 351 n n C1D H1D NDP sing 352 n n N1N C2N NDP sing 353 n n N1N C6N NDP sing 354 n n C2N C3N NDP doub 355 n n C2N H2N NDP sing 356 n n C3N C7N NDP sing 357 n n C3N C4N NDP sing 358 n n C7N O7N NDP doub 359 n n C7N N7N NDP sing 360 n n N7N H71N NDP sing 361 n n N7N H72N NDP sing 362 n n C4N C5N NDP sing 363 n n C4N H41N NDP sing 364 n n C4N H42N NDP sing 365 n n C5N C6N NDP doub 366 n n C5N H5N NDP sing 367 n n C6N H6N NDP sing 368 n n P2B O1X NDP doub 369 n n P2B O2X NDP sing 370 n n P2B O3X NDP sing 371 n n O2X HOP2 NDP sing 372 n n O3X HOP3 NDP sing 373 n n # _atom_sites.entry_id 4H98 _atom_sites.fract_transf_matrix[1][1] 0.023416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 301 193 NDP NAP . D 3 14Q A 1 302 194 14Q 14Q . E 2 NDP B 1 301 193 NDP NAP . F 3 14Q B 1 302 194 14Q 14Q . G 4 HOH A 1 401 3 HOH HOH . G 4 HOH A 2 402 5 HOH HOH . G 4 HOH A 3 403 6 HOH HOH . G 4 HOH A 4 404 7 HOH HOH . G 4 HOH A 5 405 8 HOH HOH . G 4 HOH A 6 406 10 HOH HOH . G 4 HOH A 7 407 11 HOH HOH . G 4 HOH A 8 408 13 HOH HOH . G 4 HOH A 9 409 23 HOH HOH . G 4 HOH A 10 410 27 HOH HOH . G 4 HOH A 11 411 28 HOH HOH . G 4 HOH A 12 412 36 HOH HOH . G 4 HOH A 13 413 43 HOH HOH . G 4 HOH A 14 414 46 HOH HOH . G 4 HOH A 15 415 49 HOH HOH . H 4 HOH B 1 401 1 HOH HOH . H 4 HOH B 2 402 2 HOH HOH . H 4 HOH B 3 403 9 HOH HOH . H 4 HOH B 4 404 12 HOH HOH . H 4 HOH B 5 405 17 HOH HOH . H 4 HOH B 6 406 18 HOH HOH . H 4 HOH B 7 407 26 HOH HOH . H 4 HOH B 8 408 38 HOH HOH . H 4 HOH B 9 409 41 HOH HOH . H 4 HOH B 10 410 42 HOH HOH . H 4 HOH B 11 411 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . E 2 19.734 4.019 28.192 1 31.26 ? PA NDP 301 B 1 HETATM 2 O O1A NDP . . . E 2 20.486 2.905 27.509 1 31.53 ? O1A NDP 301 B 1 HETATM 3 O O2A NDP . . . E 2 20.479 5.041 29.008 1 31 ? O2A NDP 301 B 1 HETATM 4 O O5B NDP . . . E 2 18.893 4.796 27.068 1 31.5 ? O5B NDP 301 B 1 HETATM 5 C C5B NDP . . . E 2 17.947 4.092 26.272 1 32.01 ? C5B NDP 301 B 1 HETATM 6 C C4B NDP . . . E 2 17.11 5.124 25.544 1 32.52 ? C4B NDP 301 B 1 HETATM 7 O O4B NDP . . . E 2 17.909 5.82 24.579 1 32.84 ? O4B NDP 301 B 1 HETATM 8 C C3B NDP . . . E 2 15.96 4.495 24.777 1 32.5 ? C3B NDP 301 B 1 HETATM 9 O O3B NDP . . . E 2 14.781 4.433 25.586 1 32.3 ? O3B NDP 301 B 1 HETATM 10 C C2B NDP . . . E 2 15.8 5.426 23.595 1 32.76 ? C2B NDP 301 B 1 HETATM 11 O O2B NDP . . . E 2 15.061 6.573 24 1 32.74 ? O2B NDP 301 B 1 HETATM 12 C C1B NDP . . . E 2 17.201 5.959 23.34 1 32.75 ? C1B NDP 301 B 1 HETATM 13 N N9A NDP . . . E 2 17.894 5.209 22.256 1 32.74 ? N9A NDP 301 B 1 HETATM 14 C C8A NDP . . . E 2 18.467 3.994 22.371 1 32.77 ? C8A NDP 301 B 1 HETATM 15 N N7A NDP . . . E 2 19.022 3.59 21.2 1 32.98 ? N7A NDP 301 B 1 HETATM 16 C C5A NDP . . . E 2 18.804 4.563 20.298 1 32.83 ? C5A NDP 301 B 1 HETATM 17 C C6A NDP . . . E 2 19.121 4.783 18.864 1 32.52 ? C6A NDP 301 B 1 HETATM 18 N N6A NDP . . . E 2 19.8 3.856 18.15 1 32.51 ? N6A NDP 301 B 1 HETATM 19 N N1A NDP . . . E 2 18.713 5.94 18.293 1 32.39 ? N1A NDP 301 B 1 HETATM 20 C C2A NDP . . . E 2 18.038 6.876 18.991 1 32.63 ? C2A NDP 301 B 1 HETATM 21 N N3A NDP . . . E 2 17.717 6.741 20.294 1 33.03 ? N3A NDP 301 B 1 HETATM 22 C C4A NDP . . . E 2 18.063 5.629 20.996 1 32.89 ? C4A NDP 301 B 1 HETATM 23 O O3 NDP . . . E 2 18.561 3.389 29.099 1 31.48 ? O3 NDP 301 B 1 HETATM 24 P PN NDP . . . E 2 18.754 2.01 29.907 1 31.51 ? PN NDP 301 B 1 HETATM 25 O O1N NDP . . . E 2 17.645 1.919 30.929 1 31.74 ? O1N NDP 301 B 1 HETATM 26 O O2N NDP . . . E 2 18.963 0.88 28.929 1 31.38 ? O2N NDP 301 B 1 HETATM 27 O O5D NDP . . . E 2 20.134 2.267 30.687 1 31.8 ? O5D NDP 301 B 1 HETATM 28 C C5D NDP . . . E 2 20.154 3.123 31.823 1 31.61 ? C5D NDP 301 B 1 HETATM 29 C C4D NDP . . . E 2 20.598 2.3 33.02 1 31.69 ? C4D NDP 301 B 1 HETATM 30 O O4D NDP . . . E 2 22.001 2.035 32.93 1 31.6 ? O4D NDP 301 B 1 HETATM 31 C C3D NDP . . . E 2 20.354 3.055 34.311 1 31.92 ? C3D NDP 301 B 1 HETATM 32 O O3D NDP . . . E 2 19.757 2.151 35.246 1 32.35 ? O3D NDP 301 B 1 HETATM 33 C C2D NDP . . . E 2 21.727 3.494 34.781 1 32.02 ? C2D NDP 301 B 1 HETATM 34 O O2D NDP . . . E 2 21.861 3.359 36.196 1 32.61 ? O2D NDP 301 B 1 HETATM 35 C C1D NDP . . . E 2 22.693 2.557 34.07 1 31.61 ? C1D NDP 301 B 1 HETATM 36 N N1N NDP . . . E 2 23.949 3.215 33.684 1 31.34 ? N1N NDP 301 B 1 HETATM 37 C C2N NDP . . . E 2 25.091 2.711 34.18 1 31.49 ? C2N NDP 301 B 1 HETATM 38 C C3N NDP . . . E 2 26.329 3.269 33.867 1 31.44 ? C3N NDP 301 B 1 HETATM 39 C C7N NDP . . . E 2 27.587 2.676 34.442 1 31.56 ? C7N NDP 301 B 1 HETATM 40 O O7N NDP . . . E 2 28.658 2.879 33.896 1 32.12 ? O7N NDP 301 B 1 HETATM 41 N N7N NDP . . . E 2 27.517 1.926 35.543 1 31.59 ? N7N NDP 301 B 1 HETATM 42 C C4N NDP . . . E 2 26.371 4.375 33.016 1 31.29 ? C4N NDP 301 B 1 HETATM 43 C C5N NDP . . . E 2 25.176 4.885 32.508 1 31.06 ? C5N NDP 301 B 1 HETATM 44 C C6N NDP . . . E 2 23.967 4.281 32.858 1 31.05 ? C6N NDP 301 B 1 HETATM 45 P P2B NDP . . . E 2 13.523 6.84 23.631 1 32.87 ? P2B NDP 301 B 1 HETATM 46 O O1X NDP . . . E 2 12.769 5.777 24.397 1 32.54 ? O1X NDP 301 B 1 HETATM 47 O O2X NDP . . . E 2 13.315 8.25 24.139 1 32.72 ? O2X NDP 301 B 1 HETATM 48 O O3X NDP . . . E 2 13.465 6.696 22.127 1 33 ? O3X NDP 301 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #