data_4H98 # _model_server_result.job_id kMpm9twc87gOmDqT29B3Hg _model_server_result.datetime_utc '2024-11-23 21:47:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4H98 # _exptl.entry_id 4H98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.446 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{3-[3-(1,3-benzodioxol-5-yl)-5-methoxyphenyl]prop-1-yn-1-yl}-6-ethylpyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4H98 _cell.length_a 42.706 _cell.length_b 42.706 _cell.length_c 230.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C23 H22 N4 O3' _chem_comp.formula_weight 402.446 _chem_comp.id 14Q _chem_comp.mon_nstd_flag . _chem_comp.name 5-{3-[3-(1,3-benzodioxol-5-yl)-5-methoxyphenyl]prop-1-yn-1-yl}-6-ethylpyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAL CAM 14Q sing 1 n n CAL CAK 14Q sing 2 n n NAI C6 14Q sing 3 n n CAN CAM 14Q doub 4 n y CAN CAO 14Q sing 5 n y CAM CAR 14Q sing 6 n y CAK CAJ 14Q trip 7 n n OAZ CAO 14Q sing 8 n n OAZ CBA 14Q sing 9 n n CAO CAP 14Q doub 10 n y CAJ C5 14Q sing 11 n n C6 C5 14Q doub 12 n y C6 N1 14Q sing 13 n y CAR CAQ 14Q doub 14 n y CAP CAQ 14Q sing 15 n y C5 C4 14Q sing 16 n y N1 C2 14Q doub 17 n y CAQ CAS 14Q sing 18 n n CAX CAS 14Q doub 19 n y CAX CAW 14Q sing 20 n y C4 N3 14Q doub 21 n y C4 CAH 14Q sing 22 n n CAS CAT 14Q sing 23 n y C2 N3 14Q sing 24 n y C2 NAG 14Q sing 25 n n CAH CAY 14Q sing 26 n n CAW OBB 14Q sing 27 n n CAW CAV 14Q doub 28 n y OBB CBC 14Q sing 29 n n CAT CAU 14Q doub 30 n y CAV CAU 14Q sing 31 n y CAV OBD 14Q sing 32 n n CBC OBD 14Q sing 33 n n CAY H1 14Q sing 34 n n CAY H2 14Q sing 35 n n CAY H3 14Q sing 36 n n CAH H4 14Q sing 37 n n CAH H5 14Q sing 38 n n NAG H6 14Q sing 39 n n NAG H7 14Q sing 40 n n NAI H8 14Q sing 41 n n NAI H9 14Q sing 42 n n CAL H10 14Q sing 43 n n CAL H11 14Q sing 44 n n CAR H12 14Q sing 45 n n CAN H13 14Q sing 46 n n CBA H14 14Q sing 47 n n CBA H15 14Q sing 48 n n CBA H16 14Q sing 49 n n CAP H17 14Q sing 50 n n CAX H18 14Q sing 51 n n CBC H19 14Q sing 52 n n CBC H20 14Q sing 53 n n CAU H21 14Q sing 54 n n CAT H22 14Q sing 55 n n # _atom_sites.entry_id 4H98 _atom_sites.fract_transf_matrix[1][1] 0.023416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 301 193 NDP NAP . D 3 14Q A 1 302 194 14Q 14Q . E 2 NDP B 1 301 193 NDP NAP . F 3 14Q B 1 302 194 14Q 14Q . G 4 HOH A 1 401 3 HOH HOH . G 4 HOH A 2 402 5 HOH HOH . G 4 HOH A 3 403 6 HOH HOH . G 4 HOH A 4 404 7 HOH HOH . G 4 HOH A 5 405 8 HOH HOH . G 4 HOH A 6 406 10 HOH HOH . G 4 HOH A 7 407 11 HOH HOH . G 4 HOH A 8 408 13 HOH HOH . G 4 HOH A 9 409 23 HOH HOH . G 4 HOH A 10 410 27 HOH HOH . G 4 HOH A 11 411 28 HOH HOH . G 4 HOH A 12 412 36 HOH HOH . G 4 HOH A 13 413 43 HOH HOH . G 4 HOH A 14 414 46 HOH HOH . G 4 HOH A 15 415 49 HOH HOH . H 4 HOH B 1 401 1 HOH HOH . H 4 HOH B 2 402 2 HOH HOH . H 4 HOH B 3 403 9 HOH HOH . H 4 HOH B 4 404 12 HOH HOH . H 4 HOH B 5 405 17 HOH HOH . H 4 HOH B 6 406 18 HOH HOH . H 4 HOH B 7 407 26 HOH HOH . H 4 HOH B 8 408 38 HOH HOH . H 4 HOH B 9 409 41 HOH HOH . H 4 HOH B 10 410 42 HOH HOH . H 4 HOH B 11 411 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAY 14Q . . . D 3 13.779 -9.527 -6.596 1 35.83 ? CAY 14Q 302 A 1 HETATM 2 C CAH 14Q . . . D 3 14.67 -8.538 -5.845 1 35.98 ? CAH 14Q 302 A 1 HETATM 3 C C4 14Q . . . D 3 15.245 -9.143 -4.553 1 36.45 ? C4 14Q 302 A 1 HETATM 4 N N3 14Q . . . D 3 16.094 -10.264 -4.682 1 36.61 ? N3 14Q 302 A 1 HETATM 5 C C2 14Q . . . D 3 16.664 -10.876 -3.552 1 36.61 ? C2 14Q 302 A 1 HETATM 6 N NAG 14Q . . . D 3 17.461 -11.934 -3.69 1 36.55 ? NAG 14Q 302 A 1 HETATM 7 N N1 14Q . . . D 3 16.389 -10.366 -2.276 1 36.42 ? N1 14Q 302 A 1 HETATM 8 C C6 14Q . . . D 3 15.55 -9.25 -2.14 1 36.57 ? C6 14Q 302 A 1 HETATM 9 N NAI 14Q . . . D 3 15.297 -8.777 -0.92 1 36.45 ? NAI 14Q 302 A 1 HETATM 10 C C5 14Q . . . D 3 14.983 -8.646 -3.271 1 36.65 ? C5 14Q 302 A 1 HETATM 11 C CAJ 14Q . . . D 3 14.126 -7.509 -3.097 1 36.74 ? CAJ 14Q 302 A 1 HETATM 12 C CAK 14Q . . . D 3 13.394 -6.541 -2.953 1 37.19 ? CAK 14Q 302 A 1 HETATM 13 C CAL 14Q . . . D 3 12.52 -5.38 -2.74 1 37.58 ? CAL 14Q 302 A 1 HETATM 14 C CAM 14Q . . . D 3 12.163 -4.638 -4.026 1 38.35 ? CAM 14Q 302 A 1 HETATM 15 C CAR 14Q . . . D 3 11.139 -5.098 -4.857 1 38.61 ? CAR 14Q 302 A 1 HETATM 16 C CAN 14Q . . . D 3 12.862 -3.48 -4.353 1 38.64 ? CAN 14Q 302 A 1 HETATM 17 C CAO 14Q . . . D 3 12.552 -2.78 -5.519 1 39.16 ? CAO 14Q 302 A 1 HETATM 18 O OAZ 14Q . . . D 3 13.235 -1.64 -5.849 1 39.58 ? OAZ 14Q 302 A 1 HETATM 19 C CBA 14Q . . . D 3 14.653 -1.709 -5.59 1 38.92 ? CBA 14Q 302 A 1 HETATM 20 C CAP 14Q . . . D 3 11.524 -3.242 -6.35 1 38.95 ? CAP 14Q 302 A 1 HETATM 21 C CAQ 14Q . . . D 3 10.813 -4.407 -6.031 1 39.09 ? CAQ 14Q 302 A 1 HETATM 22 C CAS 14Q . . . D 3 9.778 -4.872 -6.858 1 39.5 ? CAS 14Q 302 A 1 HETATM 23 C CAX 14Q . . . D 3 9.864 -4.805 -8.254 1 39.82 ? CAX 14Q 302 A 1 HETATM 24 C CAW 14Q . . . D 3 8.812 -5.269 -9.053 1 39.95 ? CAW 14Q 302 A 1 HETATM 25 O OBB 14Q . . . D 3 8.653 -5.316 -10.406 1 39.93 ? OBB 14Q 302 A 1 HETATM 26 C CBC 14Q . . . D 3 7.237 -5.463 -10.6 1 39.68 ? CBC 14Q 302 A 1 HETATM 27 O OBD 14Q . . . D 3 6.8 -6.189 -9.442 1 39.84 ? OBD 14Q 302 A 1 HETATM 28 C CAV 14Q . . . D 3 7.666 -5.808 -8.461 1 40.1 ? CAV 14Q 302 A 1 HETATM 29 C CAU 14Q . . . D 3 7.575 -5.876 -7.072 1 40 ? CAU 14Q 302 A 1 HETATM 30 C CAT 14Q . . . D 3 8.623 -5.409 -6.28 1 39.57 ? CAT 14Q 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 30 #