data_4H9L
#
_model_server_result.job_id            kla54WJI7mxUFIRN-C64oQ 
_model_server_result.datetime_utc      '2024-11-13 05:59:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4h9l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":406}' 
#
_entry.id    4H9L 
#
_exptl.entry_id    4H9L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              568.914 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SPHEROIDENE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4H9L 
_cell.length_a            140.19 
_cell.length_b            140.19 
_cell.length_c            184.56 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4H9L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 190 L HIS 190 1_555 I FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc2 A NE2 HIS 230 L HIS 230 1_555 I FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc3 B NE2 HIS 219 M HIS 219 1_555 I FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc4 B OE2 GLU 234 M GLU 234 1_555 I FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc5 B OE1 GLU 234 M GLU 234 1_555 I FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc6 B NE2 HIS 266 M HIS 266 1_555 I FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
#
_chem_comp.formula           'C41 H60 O' 
_chem_comp.formula_weight    568.914 
_chem_comp.id                SPO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SPHEROIDENE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CM1 O1 SPO sing 584 n n 
CM1 HM11 SPO sing 585 n n 
CM1 HM12 SPO sing 586 n n 
CM1 HM13 SPO sing 587 n n 
O1 C1 SPO sing 588 n n 
C1 C2 SPO sing 589 n n 
C1 C3 SPO sing 590 n n 
C1 C4 SPO sing 591 n n 
C2 H21A SPO sing 592 n n 
C2 H22A SPO sing 593 n n 
C2 H23 SPO sing 594 n n 
C3 H31 SPO sing 595 n n 
C3 H32A SPO sing 596 n n 
C3 H33 SPO sing 597 n n 
C4 C5 SPO sing 598 n n 
C4 H41 SPO sing 599 n n 
C4 H42 SPO sing 600 n n 
C5 C6 SPO doub 601 e n 
C5 H5 SPO sing 602 n n 
C6 C7 SPO sing 603 n n 
C6 H6 SPO sing 604 n n 
C7 C8 SPO sing 605 n n 
C7 C9 SPO doub 606 e n 
C8 H81 SPO sing 607 n n 
C8 H82 SPO sing 608 n n 
C8 H83 SPO sing 609 n n 
C9 C10 SPO sing 610 n n 
C9 H9 SPO sing 611 n n 
C10 C11 SPO doub 612 e n 
C10 H10 SPO sing 613 n n 
C11 C12 SPO sing 614 n n 
C11 H11 SPO sing 615 n n 
C12 C13 SPO sing 616 n n 
C12 C14 SPO doub 617 e n 
C13 H131 SPO sing 618 n n 
C13 H132 SPO sing 619 n n 
C13 H133 SPO sing 620 n n 
C14 C15 SPO sing 621 n n 
C14 H14 SPO sing 622 n n 
C15 C16 SPO doub 623 e n 
C15 H15 SPO sing 624 n n 
C16 C17 SPO sing 625 n n 
C16 H16 SPO sing 626 n n 
C17 C18 SPO sing 627 n n 
C17 C19 SPO doub 628 z n 
C18 H181 SPO sing 629 n n 
C18 H182 SPO sing 630 n n 
C18 H183 SPO sing 631 n n 
C19 C20 SPO sing 632 n n 
C19 H19 SPO sing 633 n n 
C20 C21 SPO doub 634 e n 
C20 H20 SPO sing 635 n n 
C21 C22 SPO sing 636 n n 
C21 H21 SPO sing 637 n n 
C22 C23 SPO doub 638 e n 
C22 H22 SPO sing 639 n n 
C23 C24 SPO sing 640 n n 
C23 C25 SPO sing 641 n n 
C24 H241 SPO sing 642 n n 
C24 H242 SPO sing 643 n n 
C24 H243 SPO sing 644 n n 
C25 C26 SPO doub 645 e n 
C25 H25 SPO sing 646 n n 
C26 C27 SPO sing 647 n n 
C26 H26 SPO sing 648 n n 
C27 C28 SPO doub 649 e n 
C27 H27 SPO sing 650 n n 
C28 C29 SPO sing 651 n n 
C28 C30 SPO sing 652 n n 
C29 H291 SPO sing 653 n n 
C29 H292 SPO sing 654 n n 
C29 H293 SPO sing 655 n n 
C30 C31 SPO sing 656 n n 
C30 H301 SPO sing 657 n n 
C30 H302 SPO sing 658 n n 
C31 C32 SPO sing 659 n n 
C31 H311 SPO sing 660 n n 
C31 H312 SPO sing 661 n n 
C32 C33 SPO doub 662 e n 
C32 H32 SPO sing 663 n n 
C33 C34 SPO sing 664 n n 
C33 C35 SPO sing 665 n n 
C34 H341 SPO sing 666 n n 
C34 H342 SPO sing 667 n n 
C34 H343 SPO sing 668 n n 
C35 C36 SPO sing 669 n n 
C35 H351 SPO sing 670 n n 
C35 H352 SPO sing 671 n n 
C36 C37 SPO sing 672 n n 
C36 H361 SPO sing 673 n n 
C36 H362 SPO sing 674 n n 
C37 C38 SPO doub 675 n n 
C37 H37 SPO sing 676 n n 
C38 C39 SPO sing 677 n n 
C38 C40 SPO sing 678 n n 
C39 H391 SPO sing 679 n n 
C39 H392 SPO sing 680 n n 
C39 H393 SPO sing 681 n n 
C40 H401 SPO sing 682 n n 
C40 H402 SPO sing 683 n n 
C40 H403 SPO sing 684 n n 
#
_atom_sites.entry_id                     4H9L 
_atom_sites.fract_transf_matrix[1][1]    0.007133 
_atom_sites.fract_transf_matrix[1][2]    0.004118 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008237 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005418 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 BCL L 1 301 302 BCL BCL . 
E 4 BCL L 1 302 304 BCL BCL . 
F 5 BPH L 1 303 402 BPH BPH . 
G 6 U10 L 1 304 502 U10 U10 . 
H 4 BCL M 1 401 301 BCL BCL . 
I 7 FE M 1 402 500 FE FE . 
J 4 BCL M 1 403 801 BCL BCL . 
K 5 BPH M 1 404 401 BPH BPH . 
L 6 U10 M 1 405 501 U10 U10 . 
M 8 SPO M 1 406 600 SPO SPO . 
N 9 HOH L 1 401 3 HOH HOH . 
N 9 HOH L 2 402 5 HOH HOH . 
N 9 HOH L 3 403 6 HOH HOH . 
N 9 HOH L 4 404 12 HOH HOH . 
N 9 HOH L 5 405 16 HOH HOH . 
N 9 HOH L 6 406 33 HOH HOH . 
N 9 HOH L 7 407 40 HOH HOH . 
N 9 HOH L 8 408 42 HOH HOH . 
N 9 HOH L 9 409 47 HOH HOH . 
N 9 HOH L 10 410 50 HOH HOH . 
N 9 HOH L 11 411 51 HOH HOH . 
N 9 HOH L 12 412 55 HOH HOH . 
N 9 HOH L 13 413 57 HOH HOH . 
N 9 HOH L 14 414 59 HOH HOH . 
N 9 HOH L 15 415 61 HOH HOH . 
N 9 HOH L 16 416 65 HOH HOH . 
N 9 HOH L 17 417 66 HOH HOH . 
N 9 HOH L 18 418 67 HOH HOH . 
N 9 HOH L 19 419 71 HOH HOH . 
N 9 HOH L 20 420 79 HOH HOH . 
N 9 HOH L 21 421 80 HOH HOH . 
N 9 HOH L 22 422 82 HOH HOH . 
N 9 HOH L 23 423 87 HOH HOH . 
N 9 HOH L 24 424 88 HOH HOH . 
N 9 HOH L 25 425 90 HOH HOH . 
N 9 HOH L 26 426 98 HOH HOH . 
O 9 HOH M 1 501 1 HOH HOH . 
O 9 HOH M 2 502 2 HOH HOH . 
O 9 HOH M 3 503 4 HOH HOH . 
O 9 HOH M 4 504 7 HOH HOH . 
O 9 HOH M 5 505 8 HOH HOH . 
O 9 HOH M 6 506 9 HOH HOH . 
O 9 HOH M 7 507 15 HOH HOH . 
O 9 HOH M 8 508 19 HOH HOH . 
O 9 HOH M 9 509 22 HOH HOH . 
O 9 HOH M 10 510 23 HOH HOH . 
O 9 HOH M 11 511 24 HOH HOH . 
O 9 HOH M 12 512 27 HOH HOH . 
O 9 HOH M 13 513 29 HOH HOH . 
O 9 HOH M 14 514 36 HOH HOH . 
O 9 HOH M 15 515 41 HOH HOH . 
O 9 HOH M 16 516 45 HOH HOH . 
O 9 HOH M 17 517 46 HOH HOH . 
O 9 HOH M 18 518 53 HOH HOH . 
O 9 HOH M 19 519 56 HOH HOH . 
O 9 HOH M 20 520 58 HOH HOH . 
O 9 HOH M 21 521 70 HOH HOH . 
O 9 HOH M 22 522 73 HOH HOH . 
O 9 HOH M 23 523 76 HOH HOH . 
O 9 HOH M 24 524 78 HOH HOH . 
O 9 HOH M 25 525 84 HOH HOH . 
O 9 HOH M 26 526 89 HOH HOH . 
O 9 HOH M 27 527 92 HOH HOH . 
O 9 HOH M 28 528 95 HOH HOH . 
O 9 HOH M 29 529 96 HOH HOH . 
O 9 HOH M 30 530 97 HOH HOH . 
P 9 HOH H 1 301 10 HOH HOH . 
P 9 HOH H 2 302 11 HOH HOH . 
P 9 HOH H 3 303 13 HOH HOH . 
P 9 HOH H 4 304 14 HOH HOH . 
P 9 HOH H 5 305 17 HOH HOH . 
P 9 HOH H 6 306 18 HOH HOH . 
P 9 HOH H 7 307 20 HOH HOH . 
P 9 HOH H 8 308 21 HOH HOH . 
P 9 HOH H 9 309 25 HOH HOH . 
P 9 HOH H 10 310 26 HOH HOH . 
P 9 HOH H 11 311 28 HOH HOH . 
P 9 HOH H 12 312 30 HOH HOH . 
P 9 HOH H 13 313 31 HOH HOH . 
P 9 HOH H 14 314 32 HOH HOH . 
P 9 HOH H 15 315 34 HOH HOH . 
P 9 HOH H 16 316 35 HOH HOH . 
P 9 HOH H 17 317 37 HOH HOH . 
P 9 HOH H 18 318 38 HOH HOH . 
P 9 HOH H 19 319 39 HOH HOH . 
P 9 HOH H 20 320 43 HOH HOH . 
P 9 HOH H 21 321 44 HOH HOH . 
P 9 HOH H 22 322 48 HOH HOH . 
P 9 HOH H 23 323 49 HOH HOH . 
P 9 HOH H 24 324 52 HOH HOH . 
P 9 HOH H 25 325 54 HOH HOH . 
P 9 HOH H 26 326 60 HOH HOH . 
P 9 HOH H 27 327 62 HOH HOH . 
P 9 HOH H 28 328 63 HOH HOH . 
P 9 HOH H 29 329 64 HOH HOH . 
P 9 HOH H 30 330 68 HOH HOH . 
P 9 HOH H 31 331 69 HOH HOH . 
P 9 HOH H 32 332 72 HOH HOH . 
P 9 HOH H 33 333 74 HOH HOH . 
P 9 HOH H 34 334 75 HOH HOH . 
P 9 HOH H 35 335 77 HOH HOH . 
P 9 HOH H 36 336 81 HOH HOH . 
P 9 HOH H 37 337 83 HOH HOH . 
P 9 HOH H 38 338 85 HOH HOH . 
P 9 HOH H 39 339 86 HOH HOH . 
P 9 HOH H 40 340 91 HOH HOH . 
P 9 HOH H 41 341 93 HOH HOH . 
P 9 HOH H 42 342 94 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CM1 SPO . . . M 8 42.9 83.624 54.762 1 94.44 ? CM1 SPO 406 M 1 
HETATM 2 O O1 SPO . . . M 8 43.825 84.74 54.784 1 95.34 ? O1 SPO 406 M 1 
HETATM 3 C C1 SPO . . . M 8 45.012 84.948 53.959 1 94.81 ? C1 SPO 406 M 1 
HETATM 4 C C2 SPO . . . M 8 45.975 85.947 54.625 1 93.8 ? C2 SPO 406 M 1 
HETATM 5 C C3 SPO . . . M 8 45.774 83.629 53.742 1 94.49 ? C3 SPO 406 M 1 
HETATM 6 C C4 SPO . . . M 8 44.647 85.582 52.604 1 92.83 ? C4 SPO 406 M 1 
HETATM 7 C C5 SPO . . . M 8 43.181 85.933 52.442 1 91.16 ? C5 SPO 406 M 1 
HETATM 8 C C6 SPO . . . M 8 42.855 86.982 51.673 1 89.77 ? C6 SPO 406 M 1 
HETATM 9 C C7 SPO . . . M 8 41.472 87.464 51.374 1 86.71 ? C7 SPO 406 M 1 
HETATM 10 C C8 SPO . . . M 8 40.308 86.983 52.205 1 86.76 ? C8 SPO 406 M 1 
HETATM 11 C C9 SPO . . . M 8 41.331 88.298 50.303 1 82.56 ? C9 SPO 406 M 1 
HETATM 12 C C10 SPO . . . M 8 40.12 88.953 49.736 1 80.05 ? C10 SPO 406 M 1 
HETATM 13 C C11 SPO . . . M 8 40.066 89.407 48.45 1 74.95 ? C11 SPO 406 M 1 
HETATM 14 C C12 SPO . . . M 8 38.905 90.121 47.844 1 70.61 ? C12 SPO 406 M 1 
HETATM 15 C C13 SPO . . . M 8 37.627 90.142 48.654 1 69.1 ? C13 SPO 406 M 1 
HETATM 16 C C14 SPO . . . M 8 39.042 90.778 46.646 1 65.59 ? C14 SPO 406 M 1 
HETATM 17 C C15 SPO . . . M 8 37.953 91.502 45.958 1 60.97 ? C15 SPO 406 M 1 
HETATM 18 C C16 SPO . . . M 8 38.053 92.086 44.732 1 59.49 ? C16 SPO 406 M 1 
HETATM 19 C C17 SPO . . . M 8 36.867 92.761 44.106 1 55.94 ? C17 SPO 406 M 1 
HETATM 20 C C18 SPO . . . M 8 35.551 92.461 44.733 1 56.55 ? C18 SPO 406 M 1 
HETATM 21 C C19 SPO . . . M 8 36.762 93.57 43.022 1 54.04 ? C19 SPO 406 M 1 
HETATM 22 C C20 SPO . . . M 8 37.788 94.168 42.191 1 55.33 ? C20 SPO 406 M 1 
HETATM 23 C C21 SPO . . . M 8 37.624 95.005 41.147 1 55.36 ? C21 SPO 406 M 1 
HETATM 24 C C22 SPO . . . M 8 38.924 95.489 40.63 1 55.56 ? C22 SPO 406 M 1 
HETATM 25 C C23 SPO . . . M 8 39.266 96.279 39.582 1 57.18 ? C23 SPO 406 M 1 
HETATM 26 C C24 SPO . . . M 8 38.214 96.816 38.637 1 55.72 ? C24 SPO 406 M 1 
HETATM 27 C C25 SPO . . . M 8 40.747 96.596 39.411 1 60.77 ? C25 SPO 406 M 1 
HETATM 28 C C26 SPO . . . M 8 41.571 96.571 38.315 1 62.08 ? C26 SPO 406 M 1 
HETATM 29 C C27 SPO . . . M 8 43.027 96.944 38.38 1 63.73 ? C27 SPO 406 M 1 
HETATM 30 C C28 SPO . . . M 8 43.832 97.455 37.358 1 63.87 ? C28 SPO 406 M 1 
HETATM 31 C C29 SPO . . . M 8 43.285 97.67 35.961 1 62.8 ? C29 SPO 406 M 1 
HETATM 32 C C30 SPO . . . M 8 45.31 97.794 37.634 1 63.28 ? C30 SPO 406 M 1 
HETATM 33 C C31 SPO . . . M 8 45.841 99.09 37.01 1 62.14 ? C31 SPO 406 M 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#