data_4H9X # _model_server_result.job_id Fb75YfPS_X1FfYTIZZhsxQ _model_server_result.datetime_utc '2024-11-28 11:46:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h9x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":404}' # _entry.id 4H9X # _exptl.entry_id 4H9X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 171.194 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3S)-2-oxotetrahydrofuran-3-yl]butanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.84 _cell.angle_gamma 90 _cell.entry_id 4H9X _cell.length_a 51.552 _cell.length_b 129.156 _cell.length_c 51.637 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H9X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 148 A ILE 144 1_555 A N KCX 149 A KCX 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C KCX 149 A KCX 145 1_555 A N LEU 150 A LEU 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale3 B C ILE 148 B ILE 144 1_555 B N KCX 149 B KCX 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale4 B C KCX 149 B KCX 145 1_555 B N LEU 150 B LEU 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A NE2 HIS 29 A HIS 25 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc2 B NE2 HIS 29 B HIS 25 1_555 G FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc3 A NE2 HIS 210 A HIS 206 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc4 B NE2 HIS 210 B HIS 206 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc5 A NE2 HIS 27 A HIS 23 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc6 A ND1 HIS 182 A HIS 178 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc7 B NE2 HIS 27 B HIS 23 1_555 G FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc8 D ZN ZN . A ZN 402 1_555 E O OH . A OH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc9 B OQ2 KCX 149 B KCX 145 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc10 A OQ2 KCX 149 A KCX 145 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc11 C FE FE . A FE 401 1_555 E O OH . A OH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc12 G FE FE . B FE 401 1_555 I O OH . B OH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc13 H ZN ZN . B ZN 402 1_555 I O OH . B OH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc14 A OD1 ASN 270 A ASN 266 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc15 B ND1 HIS 182 B HIS 178 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc16 B OD1 ASN 270 B ASN 266 1_555 G FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc17 A OQ1 KCX 149 A KCX 145 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc18 B OQ1 KCX 149 B KCX 145 1_555 G FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? # _chem_comp.formula 'C8 H13 N O3' _chem_comp.formula_weight 171.194 _chem_comp.id HL4 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3S)-2-oxotetrahydrofuran-3-yl]butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'N-butyryl-L-homoserine lactone' # _atom_sites.entry_id 4H9X _atom_sites.fract_transf_matrix[1][1] 0.019398 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001983 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007743 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 401 401 FE FE . D 3 ZN A 1 402 402 ZN ZN . E 4 OH A 1 403 403 OH OH . F 5 HL4 A 1 404 404 HL4 HL4 . G 2 FE B 1 401 401 FE FE . H 3 ZN B 1 402 402 ZN ZN . I 4 OH B 1 403 403 OH OH . J 5 HL4 B 1 404 404 HL4 HL4 . K 6 HOH A 1 501 1 HOH HOH . K 6 HOH A 2 502 4 HOH HOH . K 6 HOH A 3 503 8 HOH HOH . K 6 HOH A 4 504 9 HOH HOH . K 6 HOH A 5 505 10 HOH HOH . K 6 HOH A 6 506 13 HOH HOH . K 6 HOH A 7 507 17 HOH HOH . K 6 HOH A 8 508 18 HOH HOH . K 6 HOH A 9 509 21 HOH HOH . K 6 HOH A 10 510 22 HOH HOH . K 6 HOH A 11 511 24 HOH HOH . K 6 HOH A 12 512 25 HOH HOH . K 6 HOH A 13 513 29 HOH HOH . K 6 HOH A 14 514 31 HOH HOH . K 6 HOH A 15 515 32 HOH HOH . K 6 HOH A 16 516 34 HOH HOH . K 6 HOH A 17 517 35 HOH HOH . K 6 HOH A 18 518 37 HOH HOH . K 6 HOH A 19 519 38 HOH HOH . K 6 HOH A 20 520 40 HOH HOH . K 6 HOH A 21 521 41 HOH HOH . K 6 HOH A 22 522 45 HOH HOH . K 6 HOH A 23 523 46 HOH HOH . K 6 HOH A 24 524 48 HOH HOH . K 6 HOH A 25 525 49 HOH HOH . K 6 HOH A 26 526 52 HOH HOH . K 6 HOH A 27 527 53 HOH HOH . K 6 HOH A 28 528 54 HOH HOH . K 6 HOH A 29 529 55 HOH HOH . K 6 HOH A 30 530 61 HOH HOH . K 6 HOH A 31 531 62 HOH HOH . K 6 HOH A 32 532 63 HOH HOH . K 6 HOH A 33 533 64 HOH HOH . K 6 HOH A 34 534 65 HOH HOH . K 6 HOH A 35 535 72 HOH HOH . K 6 HOH A 36 536 73 HOH HOH . K 6 HOH A 37 537 74 HOH HOH . K 6 HOH A 38 538 77 HOH HOH . K 6 HOH A 39 539 81 HOH HOH . K 6 HOH A 40 540 82 HOH HOH . K 6 HOH A 41 541 83 HOH HOH . K 6 HOH A 42 542 84 HOH HOH . K 6 HOH A 43 543 85 HOH HOH . K 6 HOH A 44 544 86 HOH HOH . K 6 HOH A 45 545 95 HOH HOH . K 6 HOH A 46 546 96 HOH HOH . K 6 HOH A 47 547 97 HOH HOH . K 6 HOH A 48 548 98 HOH HOH . K 6 HOH A 49 549 99 HOH HOH . K 6 HOH A 50 550 100 HOH HOH . K 6 HOH A 51 551 103 HOH HOH . K 6 HOH A 52 552 106 HOH HOH . K 6 HOH A 53 553 109 HOH HOH . K 6 HOH A 54 554 111 HOH HOH . K 6 HOH A 55 555 115 HOH HOH . K 6 HOH A 56 556 116 HOH HOH . K 6 HOH A 57 557 117 HOH HOH . K 6 HOH A 58 558 120 HOH HOH . K 6 HOH A 59 559 122 HOH HOH . K 6 HOH A 60 560 123 HOH HOH . K 6 HOH A 61 561 126 HOH HOH . K 6 HOH A 62 562 127 HOH HOH . K 6 HOH A 63 563 129 HOH HOH . K 6 HOH A 64 564 130 HOH HOH . K 6 HOH A 65 565 132 HOH HOH . K 6 HOH A 66 566 133 HOH HOH . K 6 HOH A 67 567 137 HOH HOH . K 6 HOH A 68 568 138 HOH HOH . K 6 HOH A 69 569 140 HOH HOH . K 6 HOH A 70 570 145 HOH HOH . K 6 HOH A 71 571 146 HOH HOH . K 6 HOH A 72 572 147 HOH HOH . K 6 HOH A 73 573 150 HOH HOH . K 6 HOH A 74 574 151 HOH HOH . K 6 HOH A 75 575 152 HOH HOH . K 6 HOH A 76 576 153 HOH HOH . K 6 HOH A 77 577 156 HOH HOH . K 6 HOH A 78 578 157 HOH HOH . K 6 HOH A 79 579 158 HOH HOH . K 6 HOH A 80 580 159 HOH HOH . K 6 HOH A 81 581 161 HOH HOH . K 6 HOH A 82 582 162 HOH HOH . K 6 HOH A 83 583 165 HOH HOH . K 6 HOH A 84 584 169 HOH HOH . K 6 HOH A 85 585 170 HOH HOH . K 6 HOH A 86 586 173 HOH HOH . K 6 HOH A 87 587 178 HOH HOH . K 6 HOH A 88 588 181 HOH HOH . K 6 HOH A 89 589 182 HOH HOH . K 6 HOH A 90 590 189 HOH HOH . L 6 HOH B 1 501 2 HOH HOH . L 6 HOH B 2 502 3 HOH HOH . L 6 HOH B 3 503 5 HOH HOH . L 6 HOH B 4 504 6 HOH HOH . L 6 HOH B 5 505 7 HOH HOH . L 6 HOH B 6 506 11 HOH HOH . L 6 HOH B 7 507 12 HOH HOH . L 6 HOH B 8 508 14 HOH HOH . L 6 HOH B 9 509 15 HOH HOH . L 6 HOH B 10 510 16 HOH HOH . L 6 HOH B 11 511 19 HOH HOH . L 6 HOH B 12 512 20 HOH HOH . L 6 HOH B 13 513 23 HOH HOH . L 6 HOH B 14 514 26 HOH HOH . L 6 HOH B 15 515 27 HOH HOH . L 6 HOH B 16 516 28 HOH HOH . L 6 HOH B 17 517 30 HOH HOH . L 6 HOH B 18 518 33 HOH HOH . L 6 HOH B 19 519 36 HOH HOH . L 6 HOH B 20 520 39 HOH HOH . L 6 HOH B 21 521 42 HOH HOH . L 6 HOH B 22 522 43 HOH HOH . L 6 HOH B 23 523 44 HOH HOH . L 6 HOH B 24 524 47 HOH HOH . L 6 HOH B 25 525 50 HOH HOH . L 6 HOH B 26 526 51 HOH HOH . L 6 HOH B 27 527 56 HOH HOH . L 6 HOH B 28 528 57 HOH HOH . L 6 HOH B 29 529 58 HOH HOH . L 6 HOH B 30 530 59 HOH HOH . L 6 HOH B 31 531 60 HOH HOH . L 6 HOH B 32 532 66 HOH HOH . L 6 HOH B 33 533 67 HOH HOH . L 6 HOH B 34 534 68 HOH HOH . L 6 HOH B 35 535 69 HOH HOH . L 6 HOH B 36 536 70 HOH HOH . L 6 HOH B 37 537 71 HOH HOH . L 6 HOH B 38 538 75 HOH HOH . L 6 HOH B 39 539 76 HOH HOH . L 6 HOH B 40 540 78 HOH HOH . L 6 HOH B 41 541 79 HOH HOH . L 6 HOH B 42 542 80 HOH HOH . L 6 HOH B 43 543 87 HOH HOH . L 6 HOH B 44 544 88 HOH HOH . L 6 HOH B 45 545 89 HOH HOH . L 6 HOH B 46 546 90 HOH HOH . L 6 HOH B 47 547 91 HOH HOH . L 6 HOH B 48 548 92 HOH HOH . L 6 HOH B 49 549 93 HOH HOH . L 6 HOH B 50 550 94 HOH HOH . L 6 HOH B 51 551 101 HOH HOH . L 6 HOH B 52 552 102 HOH HOH . L 6 HOH B 53 553 104 HOH HOH . L 6 HOH B 54 554 105 HOH HOH . L 6 HOH B 55 555 107 HOH HOH . L 6 HOH B 56 556 108 HOH HOH . L 6 HOH B 57 557 110 HOH HOH . L 6 HOH B 58 558 112 HOH HOH . L 6 HOH B 59 559 113 HOH HOH . L 6 HOH B 60 560 114 HOH HOH . L 6 HOH B 61 561 118 HOH HOH . L 6 HOH B 62 562 119 HOH HOH . L 6 HOH B 63 563 121 HOH HOH . L 6 HOH B 64 564 124 HOH HOH . L 6 HOH B 65 565 125 HOH HOH . L 6 HOH B 66 566 128 HOH HOH . L 6 HOH B 67 567 131 HOH HOH . L 6 HOH B 68 568 134 HOH HOH . L 6 HOH B 69 569 135 HOH HOH . L 6 HOH B 70 570 136 HOH HOH . L 6 HOH B 71 571 139 HOH HOH . L 6 HOH B 72 572 141 HOH HOH . L 6 HOH B 73 573 142 HOH HOH . L 6 HOH B 74 574 143 HOH HOH . L 6 HOH B 75 575 144 HOH HOH . L 6 HOH B 76 576 148 HOH HOH . L 6 HOH B 77 577 149 HOH HOH . L 6 HOH B 78 578 154 HOH HOH . L 6 HOH B 79 579 155 HOH HOH . L 6 HOH B 80 580 160 HOH HOH . L 6 HOH B 81 581 163 HOH HOH . L 6 HOH B 82 582 164 HOH HOH . L 6 HOH B 83 583 166 HOH HOH . L 6 HOH B 84 584 167 HOH HOH . L 6 HOH B 85 585 168 HOH HOH . L 6 HOH B 86 586 171 HOH HOH . L 6 HOH B 87 587 172 HOH HOH . L 6 HOH B 88 588 174 HOH HOH . L 6 HOH B 89 589 175 HOH HOH . L 6 HOH B 90 590 176 HOH HOH . L 6 HOH B 91 591 177 HOH HOH . L 6 HOH B 92 592 179 HOH HOH . L 6 HOH B 93 593 180 HOH HOH . L 6 HOH B 94 594 183 HOH HOH . L 6 HOH B 95 595 184 HOH HOH . L 6 HOH B 96 596 185 HOH HOH . L 6 HOH B 97 597 186 HOH HOH . L 6 HOH B 98 598 187 HOH HOH . L 6 HOH B 99 599 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HL4 . . . J 5 4.454 49.6 -13.079 0.75 48.57 ? C1 HL4 404 B 1 HETATM 2 C C2 HL4 . . . J 5 4.754 48.286 -13.721 0.75 63.12 ? C2 HL4 404 B 1 HETATM 3 C C4 HL4 . . . J 5 2.557 48.403 -13.26 0.75 55.88 ? C4 HL4 404 B 1 HETATM 4 C C5 HL4 . . . J 5 3.104 49.789 -13.38 0.75 53.2 ? C5 HL4 404 B 1 HETATM 5 O O6 HL4 . . . J 5 5.822 47.799 -13.792 0.75 82.48 ? O6 HL4 404 B 1 HETATM 6 N N7 HL4 . . . J 5 5.228 50.692 -13.619 0.75 41.86 ? N7 HL4 404 B 1 HETATM 7 C C8 HL4 . . . J 5 6.281 51.255 -12.766 0.75 55.97 ? C8 HL4 404 B 1 HETATM 8 O O9 HL4 . . . J 5 6.439 50.777 -11.678 0.75 84.1 ? O9 HL4 404 B 1 HETATM 9 C C10 HL4 . . . J 5 7.168 52.391 -13.192 0.75 41.37 ? C10 HL4 404 B 1 HETATM 10 C C11 HL4 . . . J 5 8.374 52.601 -12.37 0.75 38.33 ? C11 HL4 404 B 1 HETATM 11 C C13 HL4 . . . J 5 8.245 53.303 -11.006 0.75 36.14 ? C13 HL4 404 B 1 HETATM 12 O OAP HL4 . . . J 5 3.557 47.578 -13.749 0.75 44.2 ? OAP HL4 404 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 101 _model_server_stats.query_time_ms 472 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 12 #