data_4HA6 # _model_server_result.job_id TBbjv0vEAfGcNO23Al91og _model_server_result.datetime_utc '2024-11-05 00:16:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ha6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":609}' # _entry.id 4HA6 # _exptl.entry_id 4HA6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.193 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HA6 _cell.length_a 62.489 _cell.length_b 79.169 _cell.length_c 135.219 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HA6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_444 -x-1,y-1/2,-z-1/2 -1 0 0 0 1 0 0 0 -1 -62.489 -39.5845 -67.6095 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 85 A SER 101 1_555 A N CME 86 A CME 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C CME 86 A CME 102 1_555 A N LEU 87 A LEU 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C GLY 277 A GLY 293 1_555 A N CME 278 A CME 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C CME 278 A CME 294 1_555 A N LEU 279 A LEU 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C8 H12 N2 O2' _chem_comp.formula_weight 168.193 _chem_comp.id PXM _chem_comp.mon_nstd_flag . _chem_comp.name 4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PYRIDOXAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PXM doub 402 n y N1 C6 PXM sing 403 n y C2 C2A PXM sing 404 n n C2 C3 PXM sing 405 n y C2A H2A1 PXM sing 406 n n C2A H2A2 PXM sing 407 n n C2A H2A3 PXM sing 408 n n C3 O3 PXM sing 409 n n C3 C4 PXM doub 410 n y O3 HO3 PXM sing 411 n n C4 C5 PXM sing 412 n y C4 C4A PXM sing 413 n n C5 C5A PXM sing 414 n n C5 C6 PXM doub 415 n y C5A O5 PXM sing 416 n n C5A H5A1 PXM sing 417 n n C5A H5A2 PXM sing 418 n n O5 HO5 PXM sing 419 n n C6 H6 PXM sing 420 n n C4A N4 PXM sing 421 n n C4A H4A1 PXM sing 422 n n C4A H4A2 PXM sing 423 n n N4 HN41 PXM sing 424 n n N4 HN42 PXM sing 425 n n # _atom_sites.entry_id 4HA6 _atom_sites.fract_transf_matrix[1][1] 0.016003 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 1 FAD FAD . C 3 GOL A 1 602 1 GOL GOL . D 3 GOL A 1 603 2 GOL GOL . E 3 GOL A 1 604 3 GOL GOL . F 3 GOL A 1 605 4 GOL GOL . G 3 GOL A 1 606 5 GOL GOL . H 3 GOL A 1 607 6 GOL GOL . I 3 GOL A 1 608 7 GOL GOL . J 4 PXM A 1 609 1 PXM PXM . K 5 HOH A 1 701 1 HOH HOH . K 5 HOH A 2 702 2 HOH HOH . K 5 HOH A 3 703 3 HOH HOH . K 5 HOH A 4 704 4 HOH HOH . K 5 HOH A 5 705 5 HOH HOH . K 5 HOH A 6 706 6 HOH HOH . K 5 HOH A 7 707 7 HOH HOH . K 5 HOH A 8 708 8 HOH HOH . K 5 HOH A 9 709 9 HOH HOH . K 5 HOH A 10 710 10 HOH HOH . K 5 HOH A 11 711 11 HOH HOH . K 5 HOH A 12 712 12 HOH HOH . K 5 HOH A 13 713 13 HOH HOH . K 5 HOH A 14 714 14 HOH HOH . K 5 HOH A 15 715 15 HOH HOH . K 5 HOH A 16 716 16 HOH HOH . K 5 HOH A 17 717 17 HOH HOH . K 5 HOH A 18 718 18 HOH HOH . K 5 HOH A 19 719 19 HOH HOH . K 5 HOH A 20 720 20 HOH HOH . K 5 HOH A 21 721 21 HOH HOH . K 5 HOH A 22 722 22 HOH HOH . K 5 HOH A 23 723 23 HOH HOH . K 5 HOH A 24 724 24 HOH HOH . K 5 HOH A 25 725 25 HOH HOH . K 5 HOH A 26 726 26 HOH HOH . K 5 HOH A 27 727 27 HOH HOH . K 5 HOH A 28 728 28 HOH HOH . K 5 HOH A 29 729 29 HOH HOH . K 5 HOH A 30 730 30 HOH HOH . K 5 HOH A 31 731 31 HOH HOH . K 5 HOH A 32 732 32 HOH HOH . K 5 HOH A 33 733 33 HOH HOH . K 5 HOH A 34 734 34 HOH HOH . K 5 HOH A 35 735 35 HOH HOH . K 5 HOH A 36 736 36 HOH HOH . K 5 HOH A 37 737 37 HOH HOH . K 5 HOH A 38 738 38 HOH HOH . K 5 HOH A 39 739 39 HOH HOH . K 5 HOH A 40 740 40 HOH HOH . K 5 HOH A 41 741 41 HOH HOH . K 5 HOH A 42 742 42 HOH HOH . K 5 HOH A 43 743 43 HOH HOH . K 5 HOH A 44 744 44 HOH HOH . K 5 HOH A 45 745 45 HOH HOH . K 5 HOH A 46 746 46 HOH HOH . K 5 HOH A 47 747 47 HOH HOH . K 5 HOH A 48 748 48 HOH HOH . K 5 HOH A 49 749 49 HOH HOH . K 5 HOH A 50 750 50 HOH HOH . K 5 HOH A 51 751 51 HOH HOH . K 5 HOH A 52 752 52 HOH HOH . K 5 HOH A 53 753 53 HOH HOH . K 5 HOH A 54 754 54 HOH HOH . K 5 HOH A 55 755 55 HOH HOH . K 5 HOH A 56 756 56 HOH HOH . K 5 HOH A 57 757 57 HOH HOH . K 5 HOH A 58 758 58 HOH HOH . K 5 HOH A 59 759 59 HOH HOH . K 5 HOH A 60 760 60 HOH HOH . K 5 HOH A 61 761 61 HOH HOH . K 5 HOH A 62 762 62 HOH HOH . K 5 HOH A 63 763 63 HOH HOH . K 5 HOH A 64 764 64 HOH HOH . K 5 HOH A 65 765 65 HOH HOH . K 5 HOH A 66 766 66 HOH HOH . K 5 HOH A 67 767 67 HOH HOH . K 5 HOH A 68 768 68 HOH HOH . K 5 HOH A 69 769 69 HOH HOH . K 5 HOH A 70 770 70 HOH HOH . K 5 HOH A 71 771 71 HOH HOH . K 5 HOH A 72 772 72 HOH HOH . K 5 HOH A 73 773 73 HOH HOH . K 5 HOH A 74 774 74 HOH HOH . K 5 HOH A 75 775 75 HOH HOH . K 5 HOH A 76 776 76 HOH HOH . K 5 HOH A 77 777 77 HOH HOH . K 5 HOH A 78 778 78 HOH HOH . K 5 HOH A 79 779 79 HOH HOH . K 5 HOH A 80 780 81 HOH HOH . K 5 HOH A 81 781 82 HOH HOH . K 5 HOH A 82 782 83 HOH HOH . K 5 HOH A 83 783 84 HOH HOH . K 5 HOH A 84 784 85 HOH HOH . K 5 HOH A 85 785 86 HOH HOH . K 5 HOH A 86 786 87 HOH HOH . K 5 HOH A 87 787 88 HOH HOH . K 5 HOH A 88 788 89 HOH HOH . K 5 HOH A 89 789 90 HOH HOH . K 5 HOH A 90 790 91 HOH HOH . K 5 HOH A 91 791 92 HOH HOH . K 5 HOH A 92 792 93 HOH HOH . K 5 HOH A 93 793 94 HOH HOH . K 5 HOH A 94 794 95 HOH HOH . K 5 HOH A 95 795 96 HOH HOH . K 5 HOH A 96 796 97 HOH HOH . K 5 HOH A 97 797 98 HOH HOH . K 5 HOH A 98 798 99 HOH HOH . K 5 HOH A 99 799 100 HOH HOH . K 5 HOH A 100 800 101 HOH HOH . K 5 HOH A 101 801 102 HOH HOH . K 5 HOH A 102 802 103 HOH HOH . K 5 HOH A 103 803 104 HOH HOH . K 5 HOH A 104 804 105 HOH HOH . K 5 HOH A 105 805 106 HOH HOH . K 5 HOH A 106 806 107 HOH HOH . K 5 HOH A 107 807 108 HOH HOH . K 5 HOH A 108 808 109 HOH HOH . K 5 HOH A 109 809 110 HOH HOH . K 5 HOH A 110 810 111 HOH HOH . K 5 HOH A 111 811 113 HOH HOH . K 5 HOH A 112 812 114 HOH HOH . K 5 HOH A 113 813 115 HOH HOH . K 5 HOH A 114 814 116 HOH HOH . K 5 HOH A 115 815 117 HOH HOH . K 5 HOH A 116 816 118 HOH HOH . K 5 HOH A 117 817 119 HOH HOH . K 5 HOH A 118 818 120 HOH HOH . K 5 HOH A 119 819 121 HOH HOH . K 5 HOH A 120 820 122 HOH HOH . K 5 HOH A 121 821 123 HOH HOH . K 5 HOH A 122 822 124 HOH HOH . K 5 HOH A 123 823 125 HOH HOH . K 5 HOH A 124 824 126 HOH HOH . K 5 HOH A 125 825 127 HOH HOH . K 5 HOH A 126 826 128 HOH HOH . K 5 HOH A 127 827 130 HOH HOH . K 5 HOH A 128 828 131 HOH HOH . K 5 HOH A 129 829 132 HOH HOH . K 5 HOH A 130 830 133 HOH HOH . K 5 HOH A 131 831 134 HOH HOH . K 5 HOH A 132 832 135 HOH HOH . K 5 HOH A 133 833 136 HOH HOH . K 5 HOH A 134 834 137 HOH HOH . K 5 HOH A 135 835 138 HOH HOH . K 5 HOH A 136 836 139 HOH HOH . K 5 HOH A 137 837 140 HOH HOH . K 5 HOH A 138 838 141 HOH HOH . K 5 HOH A 139 839 142 HOH HOH . K 5 HOH A 140 840 143 HOH HOH . K 5 HOH A 141 841 144 HOH HOH . K 5 HOH A 142 842 145 HOH HOH . K 5 HOH A 143 843 146 HOH HOH . K 5 HOH A 144 844 147 HOH HOH . K 5 HOH A 145 845 148 HOH HOH . K 5 HOH A 146 846 150 HOH HOH . K 5 HOH A 147 847 151 HOH HOH . K 5 HOH A 148 848 152 HOH HOH . K 5 HOH A 149 849 153 HOH HOH . K 5 HOH A 150 850 154 HOH HOH . K 5 HOH A 151 851 155 HOH HOH . K 5 HOH A 152 852 156 HOH HOH . K 5 HOH A 153 853 157 HOH HOH . K 5 HOH A 154 854 158 HOH HOH . K 5 HOH A 155 855 159 HOH HOH . K 5 HOH A 156 856 160 HOH HOH . K 5 HOH A 157 857 161 HOH HOH . K 5 HOH A 158 858 162 HOH HOH . K 5 HOH A 159 859 163 HOH HOH . K 5 HOH A 160 860 164 HOH HOH . K 5 HOH A 161 861 165 HOH HOH . K 5 HOH A 162 862 166 HOH HOH . K 5 HOH A 163 863 167 HOH HOH . K 5 HOH A 164 864 168 HOH HOH . K 5 HOH A 165 865 169 HOH HOH . K 5 HOH A 166 866 170 HOH HOH . K 5 HOH A 167 867 171 HOH HOH . K 5 HOH A 168 868 172 HOH HOH . K 5 HOH A 169 869 173 HOH HOH . K 5 HOH A 170 870 174 HOH HOH . K 5 HOH A 171 871 175 HOH HOH . K 5 HOH A 172 872 176 HOH HOH . K 5 HOH A 173 873 177 HOH HOH . K 5 HOH A 174 874 178 HOH HOH . K 5 HOH A 175 875 179 HOH HOH . K 5 HOH A 176 876 181 HOH HOH . K 5 HOH A 177 877 182 HOH HOH . K 5 HOH A 178 878 183 HOH HOH . K 5 HOH A 179 879 184 HOH HOH . K 5 HOH A 180 880 185 HOH HOH . K 5 HOH A 181 881 186 HOH HOH . K 5 HOH A 182 882 187 HOH HOH . K 5 HOH A 183 883 188 HOH HOH . K 5 HOH A 184 884 189 HOH HOH . K 5 HOH A 185 885 190 HOH HOH . K 5 HOH A 186 886 191 HOH HOH . K 5 HOH A 187 887 192 HOH HOH . K 5 HOH A 188 888 193 HOH HOH . K 5 HOH A 189 889 194 HOH HOH . K 5 HOH A 190 890 195 HOH HOH . K 5 HOH A 191 891 196 HOH HOH . K 5 HOH A 192 892 197 HOH HOH . K 5 HOH A 193 893 198 HOH HOH . K 5 HOH A 194 894 199 HOH HOH . K 5 HOH A 195 895 200 HOH HOH . K 5 HOH A 196 896 201 HOH HOH . K 5 HOH A 197 897 202 HOH HOH . K 5 HOH A 198 898 203 HOH HOH . K 5 HOH A 199 899 204 HOH HOH . K 5 HOH A 200 900 205 HOH HOH . K 5 HOH A 201 901 206 HOH HOH . K 5 HOH A 202 902 207 HOH HOH . K 5 HOH A 203 903 208 HOH HOH . K 5 HOH A 204 904 209 HOH HOH . K 5 HOH A 205 905 212 HOH HOH . K 5 HOH A 206 906 213 HOH HOH . K 5 HOH A 207 907 214 HOH HOH . K 5 HOH A 208 908 215 HOH HOH . K 5 HOH A 209 909 217 HOH HOH . K 5 HOH A 210 910 218 HOH HOH . K 5 HOH A 211 911 219 HOH HOH . K 5 HOH A 212 912 220 HOH HOH . K 5 HOH A 213 913 221 HOH HOH . K 5 HOH A 214 914 222 HOH HOH . K 5 HOH A 215 915 224 HOH HOH . K 5 HOH A 216 916 225 HOH HOH . K 5 HOH A 217 917 228 HOH HOH . K 5 HOH A 218 918 229 HOH HOH . K 5 HOH A 219 919 232 HOH HOH . K 5 HOH A 220 920 233 HOH HOH . K 5 HOH A 221 921 234 HOH HOH . K 5 HOH A 222 922 235 HOH HOH . K 5 HOH A 223 923 236 HOH HOH . K 5 HOH A 224 924 237 HOH HOH . K 5 HOH A 225 925 239 HOH HOH . K 5 HOH A 226 926 240 HOH HOH . K 5 HOH A 227 927 241 HOH HOH . K 5 HOH A 228 928 242 HOH HOH . K 5 HOH A 229 929 243 HOH HOH . K 5 HOH A 230 930 244 HOH HOH . K 5 HOH A 231 931 245 HOH HOH . K 5 HOH A 232 932 246 HOH HOH . K 5 HOH A 233 933 248 HOH HOH . K 5 HOH A 234 934 249 HOH HOH . K 5 HOH A 235 935 251 HOH HOH . K 5 HOH A 236 936 252 HOH HOH . K 5 HOH A 237 937 254 HOH HOH . K 5 HOH A 238 938 255 HOH HOH . K 5 HOH A 239 939 256 HOH HOH . K 5 HOH A 240 940 257 HOH HOH . K 5 HOH A 241 941 258 HOH HOH . K 5 HOH A 242 942 259 HOH HOH . K 5 HOH A 243 943 260 HOH HOH . K 5 HOH A 244 944 261 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PXM . . . J 4 -31.674 3.448 -19.186 1 36.8 ? N1 PXM 609 A 1 HETATM 2 C C2 PXM . . . J 4 -30.416 3.735 -18.857 1 25.41 ? C2 PXM 609 A 1 HETATM 3 C C2A PXM . . . J 4 -29.708 3.048 -17.732 1 27.14 ? C2A PXM 609 A 1 HETATM 4 C C3 PXM . . . J 4 -29.788 4.71 -19.617 1 27.23 ? C3 PXM 609 A 1 HETATM 5 O O3 PXM . . . J 4 -28.486 5.046 -19.319 1 32.93 ? O3 PXM 609 A 1 HETATM 6 C C4 PXM . . . J 4 -30.448 5.37 -20.676 1 48.66 ? C4 PXM 609 A 1 HETATM 7 C C5 PXM . . . J 4 -31.797 5.01 -20.965 1 31.64 ? C5 PXM 609 A 1 HETATM 8 C C5A PXM . . . J 4 -32.667 5.582 -22.067 1 32.04 ? C5A PXM 609 A 1 HETATM 9 O O5 PXM . . . J 4 -32.373 6.852 -22.535 1 30.17 ? O5 PXM 609 A 1 HETATM 10 C C6 PXM . . . J 4 -32.372 4.015 -20.167 1 38.81 ? C6 PXM 609 A 1 HETATM 11 C C4A PXM . . . J 4 -29.665 6.409 -21.427 1 33.77 ? C4A PXM 609 A 1 HETATM 12 N N4 PXM . . . J 4 -28.997 7.359 -20.586 1 12.68 ? N4 PXM 609 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 12 #