data_4HB6 # _model_server_result.job_id M1FsfOia1sk5U-esKmQ3wA _model_server_result.datetime_utc '2024-11-08 03:00:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hb6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":74}' # _entry.id 4HB6 # _exptl.entry_id 4HB6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HB6 _cell.length_a 32.35 _cell.length_b 32.35 _cell.length_c 178.53 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HB6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/4 0 1 0 1 0 0 0 0 -1 0 0 44.6325 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 27 A CYS 27 1_555 B CAB HEC . A HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? covale ? covale2 A SG CYS 30 A CYS 30 1_555 B CAC HEC . A HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? covale ? covale3 A SG CYS 51 A CYS 51 1_555 C CAB HEC . A HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? covale ? covale4 A SG CYS 54 A CYS 54 1_555 C CAC HEC . A HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? covale ? covale5 A SG CYS 65 A CYS 65 1_555 D CAB HEC . A HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? covale ? covale6 A SG CYS 68 A CYS 68 1_555 D CAC HEC . A HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc1 A NE2 HIS 17 A HIS 17 1_555 B FE HEC . A HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc2 A NE2 HIS 20 A HIS 20 1_555 C FE HEC . A HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc3 A NE2 HIS 31 A HIS 31 1_555 B FE HEC . A HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc4 A NE2 HIS 47 A HIS 47 1_555 D FE HEC . A HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc5 A NE2 HIS 55 A HIS 55 1_555 C FE HEC . A HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc6 A NE2 HIS 69 A HIS 69 1_555 D FE HEC . A HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 174 n n FE NB HEC sing 175 n n FE NC HEC sing 176 n n FE ND HEC sing 177 n n CHA C1A HEC doub 178 n n CHA C4D HEC sing 179 n n CHA HHA HEC sing 180 n n CHB C4A HEC doub 181 n n CHB C1B HEC sing 182 n n CHB HHB HEC sing 183 n n CHC C4B HEC doub 184 n n CHC C1C HEC sing 185 n n CHC HHC HEC sing 186 n n CHD C4C HEC doub 187 n n CHD C1D HEC sing 188 n n CHD HHD HEC sing 189 n n NA C1A HEC sing 190 n y NA C4A HEC sing 191 n y C1A C2A HEC sing 192 n y C2A C3A HEC doub 193 n y C2A CAA HEC sing 194 n n C3A C4A HEC sing 195 n y C3A CMA HEC sing 196 n n CMA HMA1 HEC sing 197 n n CMA HMA2 HEC sing 198 n n CMA HMA3 HEC sing 199 n n CAA CBA HEC sing 200 n n CAA HAA1 HEC sing 201 n n CAA HAA2 HEC sing 202 n n CBA CGA HEC sing 203 n n CBA HBA1 HEC sing 204 n n CBA HBA2 HEC sing 205 n n CGA O1A HEC doub 206 n n CGA O2A HEC sing 207 n n O2A H2A HEC sing 208 n n NB C1B HEC sing 209 n y NB C4B HEC sing 210 n y C1B C2B HEC doub 211 n y C2B C3B HEC sing 212 n y C2B CMB HEC sing 213 n n C3B C4B HEC sing 214 n y C3B CAB HEC doub 215 e n CMB HMB1 HEC sing 216 n n CMB HMB2 HEC sing 217 n n CMB HMB3 HEC sing 218 n n CAB CBB HEC sing 219 n n CAB HAB HEC sing 220 n n CBB HBB1 HEC sing 221 n n CBB HBB2 HEC sing 222 n n CBB HBB3 HEC sing 223 n n NC C1C HEC sing 224 n y NC C4C HEC sing 225 n y C1C C2C HEC doub 226 n y C2C C3C HEC sing 227 n y C2C CMC HEC sing 228 n n C3C C4C HEC sing 229 n y C3C CAC HEC doub 230 e n CMC HMC1 HEC sing 231 n n CMC HMC2 HEC sing 232 n n CMC HMC3 HEC sing 233 n n CAC CBC HEC sing 234 n n CAC HAC HEC sing 235 n n CBC HBC1 HEC sing 236 n n CBC HBC2 HEC sing 237 n n CBC HBC3 HEC sing 238 n n ND C1D HEC sing 239 n y ND C4D HEC sing 240 n y C1D C2D HEC doub 241 n y C2D C3D HEC sing 242 n y C2D CMD HEC sing 243 n n C3D C4D HEC doub 244 n y C3D CAD HEC sing 245 n n CMD HMD1 HEC sing 246 n n CMD HMD2 HEC sing 247 n n CMD HMD3 HEC sing 248 n n CAD CBD HEC sing 249 n n CAD HAD1 HEC sing 250 n n CAD HAD2 HEC sing 251 n n CBD CGD HEC sing 252 n n CBD HBD1 HEC sing 253 n n CBD HBD2 HEC sing 254 n n CGD O1D HEC doub 255 n n CGD O2D HEC sing 256 n n O2D H2D HEC sing 257 n n # _atom_sites.entry_id 4HB6 _atom_sites.fract_transf_matrix[1][1] 0.030912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 72 72 HEC HEM . C 2 HEC A 1 73 73 HEC HEM . D 2 HEC A 1 74 74 HEC HEM . E 3 DXC A 1 75 75 DXC DXC . F 4 SO4 A 1 76 76 SO4 SO4 . G 4 SO4 A 1 77 77 SO4 SO4 . H 4 SO4 A 1 78 78 SO4 SO4 . I 5 HOH A 1 101 1 HOH HOH . I 5 HOH A 2 102 2 HOH HOH . I 5 HOH A 3 103 3 HOH HOH . I 5 HOH A 4 104 4 HOH HOH . I 5 HOH A 5 105 5 HOH HOH . I 5 HOH A 6 106 6 HOH HOH . I 5 HOH A 7 107 7 HOH HOH . I 5 HOH A 8 108 8 HOH HOH . I 5 HOH A 9 109 9 HOH HOH . I 5 HOH A 10 110 10 HOH HOH . I 5 HOH A 11 111 11 HOH HOH . I 5 HOH A 12 112 12 HOH HOH . I 5 HOH A 13 113 13 HOH HOH . I 5 HOH A 14 114 14 HOH HOH . I 5 HOH A 15 115 15 HOH HOH . I 5 HOH A 16 116 16 HOH HOH . I 5 HOH A 17 117 17 HOH HOH . I 5 HOH A 18 118 18 HOH HOH . I 5 HOH A 19 119 19 HOH HOH . I 5 HOH A 20 120 20 HOH HOH . I 5 HOH A 21 121 21 HOH HOH . I 5 HOH A 22 122 22 HOH HOH . I 5 HOH A 23 123 23 HOH HOH . I 5 HOH A 24 124 24 HOH HOH . I 5 HOH A 25 125 25 HOH HOH . I 5 HOH A 26 126 26 HOH HOH . I 5 HOH A 27 127 27 HOH HOH . I 5 HOH A 28 128 28 HOH HOH . I 5 HOH A 29 129 29 HOH HOH . I 5 HOH A 30 130 30 HOH HOH . I 5 HOH A 31 131 31 HOH HOH . I 5 HOH A 32 132 32 HOH HOH . I 5 HOH A 33 133 33 HOH HOH . I 5 HOH A 34 134 34 HOH HOH . I 5 HOH A 35 135 35 HOH HOH . I 5 HOH A 36 136 36 HOH HOH . I 5 HOH A 37 137 37 HOH HOH . I 5 HOH A 38 138 38 HOH HOH . I 5 HOH A 39 139 39 HOH HOH . I 5 HOH A 40 140 40 HOH HOH . I 5 HOH A 41 141 41 HOH HOH . I 5 HOH A 42 142 42 HOH HOH . I 5 HOH A 43 143 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . D 2 15.079 32.262 14.745 1 12.29 ? FE HEC 74 A 1 HETATM 2 C CHA HEC . . . D 2 15.938 32.82 18.017 1 12.64 ? CHA HEC 74 A 1 HETATM 3 C CHB HEC . . . D 2 11.837 32.501 15.501 1 11.77 ? CHB HEC 74 A 1 HETATM 4 C CHC HEC . . . D 2 14.365 32.331 11.441 1 12.8 ? CHC HEC 74 A 1 HETATM 5 C CHD HEC . . . D 2 18.249 31.227 14.045 1 13.68 ? CHD HEC 74 A 1 HETATM 6 N NA HEC . . . D 2 14.078 32.623 16.445 1 11.6 ? NA HEC 74 A 1 HETATM 7 C C1A HEC . . . D 2 14.594 32.875 17.691 1 12.22 ? C1A HEC 74 A 1 HETATM 8 C C2A HEC . . . D 2 13.517 33.199 18.583 1 13.25 ? C2A HEC 74 A 1 HETATM 9 C C3A HEC . . . D 2 12.37 33.099 17.896 1 12.06 ? C3A HEC 74 A 1 HETATM 10 C C4A HEC . . . D 2 12.707 32.738 16.531 1 12.03 ? C4A HEC 74 A 1 HETATM 11 C CMA HEC . . . D 2 10.942 33.341 18.438 1 14.74 ? CMA HEC 74 A 1 HETATM 12 C CAA HEC . . . D 2 13.693 33.545 20.081 1 15.5 ? CAA HEC 74 A 1 HETATM 13 C CBA HEC . . . D 2 13.893 32.244 20.836 1 14.65 ? CBA HEC 74 A 1 HETATM 14 C CGA HEC . . . D 2 14.245 32.48 22.296 1 15.32 ? CGA HEC 74 A 1 HETATM 15 O O1A HEC . . . D 2 14.519 33.634 22.69 1 13.96 ? O1A HEC 74 A 1 HETATM 16 O O2A HEC . . . D 2 14.258 31.497 23.064 1 15.38 ? O2A HEC 74 A 1 HETATM 17 N NB HEC . . . D 2 13.415 32.345 13.677 1 11.94 ? NB HEC 74 A 1 HETATM 18 C C1B HEC . . . D 2 12.138 32.465 14.176 1 14.57 ? C1B HEC 74 A 1 HETATM 19 C C2B HEC . . . D 2 11.189 32.56 13.082 1 13.69 ? C2B HEC 74 A 1 HETATM 20 C C3B HEC . . . D 2 11.908 32.539 11.95 1 14 ? C3B HEC 74 A 1 HETATM 21 C C4B HEC . . . D 2 13.305 32.39 12.308 1 12.64 ? C4B HEC 74 A 1 HETATM 22 C CMB HEC . . . D 2 9.648 32.681 13.214 1 14.2 ? CMB HEC 74 A 1 HETATM 23 C CAB HEC . . . D 2 11.423 32.678 10.496 1 14.02 ? CAB HEC 74 A 1 HETATM 24 C CBB HEC . . . D 2 10.805 33.85 10.184 1 13.98 ? CBB HEC 74 A 1 HETATM 25 N NC HEC . . . D 2 16.096 31.877 13.078 1 14.07 ? NC HEC 74 A 1 HETATM 26 C C1C HEC . . . D 2 15.61 31.926 11.788 1 12.82 ? C1C HEC 74 A 1 HETATM 27 C C2C HEC . . . D 2 16.638 31.466 10.868 1 14.09 ? C2C HEC 74 A 1 HETATM 28 C C3C HEC . . . D 2 17.71 31.161 11.592 1 14.9 ? C3C HEC 74 A 1 HETATM 29 C C4C HEC . . . D 2 17.397 31.404 12.988 1 13.48 ? C4C HEC 74 A 1 HETATM 30 C CMC HEC . . . D 2 16.472 31.341 9.331 1 13.87 ? CMC HEC 74 A 1 HETATM 31 C CAC HEC . . . D 2 19.042 30.59 11.083 1 14.79 ? CAC HEC 74 A 1 HETATM 32 C CBC HEC . . . D 2 19.697 31.123 10.026 1 16.21 ? CBC HEC 74 A 1 HETATM 33 N ND HEC . . . D 2 16.786 32.109 15.821 1 11.64 ? ND HEC 74 A 1 HETATM 34 C C1D HEC . . . D 2 17.976 31.57 15.34 1 12.32 ? C1D HEC 74 A 1 HETATM 35 C C2D HEC . . . D 2 18.923 31.432 16.423 1 12.71 ? C2D HEC 74 A 1 HETATM 36 C C3D HEC . . . D 2 18.22 31.927 17.634 1 13.85 ? C3D HEC 74 A 1 HETATM 37 C C4D HEC . . . D 2 16.899 32.302 17.198 1 13.11 ? C4D HEC 74 A 1 HETATM 38 C CMD HEC . . . D 2 20.359 30.91 16.403 1 12.7 ? CMD HEC 74 A 1 HETATM 39 C CAD HEC . . . D 2 18.798 31.91 19.057 1 15.2 ? CAD HEC 74 A 1 HETATM 40 C CBD HEC . . . D 2 19.385 33.226 19.451 1 16.97 ? CBD HEC 74 A 1 HETATM 41 C CGD HEC . . . D 2 20.1 33.001 20.769 1 17.22 ? CGD HEC 74 A 1 HETATM 42 O O1D HEC . . . D 2 20.969 32.101 20.863 1 17.2 ? O1D HEC 74 A 1 HETATM 43 O O2D HEC . . . D 2 19.739 33.725 21.71 1 17.85 ? O2D HEC 74 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #