data_4HBG # _model_server_result.job_id aRyY_LNWdWBfD8vIQVxqZg _model_server_result.datetime_utc '2024-11-23 14:00:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hbg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4HBG # _exptl.entry_id 4HBG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4HBG _cell.length_a 50.8 _cell.length_b 50.8 _cell.length_c 415.041 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -69.1735 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 4HBG _atom_sites.fract_transf_matrix[1][1] 0.019685 _atom_sites.fract_transf_matrix[1][2] 0.011365 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02273 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 301 1 NDP NAP . C 3 HOH A 1 401 1 HOH HOH . C 3 HOH A 2 402 2 HOH HOH . C 3 HOH A 3 403 3 HOH HOH . C 3 HOH A 4 404 4 HOH HOH . C 3 HOH A 5 405 5 HOH HOH . C 3 HOH A 6 406 6 HOH HOH . C 3 HOH A 7 407 7 HOH HOH . C 3 HOH A 8 408 8 HOH HOH . C 3 HOH A 9 409 9 HOH HOH . C 3 HOH A 10 410 10 HOH HOH . C 3 HOH A 11 411 13 HOH HOH . C 3 HOH A 12 412 14 HOH HOH . C 3 HOH A 13 413 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 -27.85 6.695 -16.535 1 72.64 ? PA NDP 301 A 1 HETATM 2 O O1A NDP . . . B 2 -28.043 6.431 -18.047 1 78.78 ? O1A NDP 301 A 1 HETATM 3 O O2A NDP . . . B 2 -28.904 5.896 -15.675 1 82.31 ? O2A NDP 301 A 1 HETATM 4 O O5B NDP . . . B 2 -27.926 8.245 -16.342 1 65.25 ? O5B NDP 301 A 1 HETATM 5 C C5B NDP . . . B 2 -28.537 9.065 -17.325 1 61.71 ? C5B NDP 301 A 1 HETATM 6 C C4B NDP . . . B 2 -28.5 10.571 -17.057 1 54.73 ? C4B NDP 301 A 1 HETATM 7 O O4B NDP . . . B 2 -28.831 11.25 -18.2 1 55.07 ? O4B NDP 301 A 1 HETATM 8 C C3B NDP . . . B 2 -29.476 10.969 -15.984 1 53.95 ? C3B NDP 301 A 1 HETATM 9 O O3B NDP . . . B 2 -28.849 11.801 -15.062 1 50.73 ? O3B NDP 301 A 1 HETATM 10 C C2B NDP . . . B 2 -30.502 11.626 -16.727 1 55.06 ? C2B NDP 301 A 1 HETATM 11 O O2B NDP . . . B 2 -31.228 12.534 -15.983 1 54.29 ? O2B NDP 301 A 1 HETATM 12 C C1B NDP . . . B 2 -29.808 12.239 -17.878 1 52.49 ? C1B NDP 301 A 1 HETATM 13 N N9A NDP . . . B 2 -30.791 12.483 -18.939 1 54.9 ? N9A NDP 301 A 1 HETATM 14 C C8A NDP . . . B 2 -31.524 11.551 -19.582 1 59.26 ? C8A NDP 301 A 1 HETATM 15 N N7A NDP . . . B 2 -32.354 12.18 -20.44 1 63.88 ? N7A NDP 301 A 1 HETATM 16 C C5A NDP . . . B 2 -32.165 13.518 -20.334 1 60.14 ? C5A NDP 301 A 1 HETATM 17 C C6A NDP . . . B 2 -32.718 14.663 -20.94 1 63.34 ? C6A NDP 301 A 1 HETATM 18 N N6A NDP . . . B 2 -33.711 14.556 -21.912 1 70.31 ? N6A NDP 301 A 1 HETATM 19 N N1A NDP . . . B 2 -32.279 15.88 -20.578 1 60.72 ? N1A NDP 301 A 1 HETATM 20 C C2A NDP . . . B 2 -31.315 16.051 -19.647 1 55.06 ? C2A NDP 301 A 1 HETATM 21 N N3A NDP . . . B 2 -30.775 14.967 -19.059 1 51.34 ? N3A NDP 301 A 1 HETATM 22 C C4A NDP . . . B 2 -31.179 13.711 -19.375 1 54.57 ? C4A NDP 301 A 1 HETATM 23 O O3 NDP . . . B 2 -26.419 6.138 -16.174 1 74.57 ? O3 NDP 301 A 1 HETATM 24 P PN NDP . . . B 2 -25.088 6.232 -17.051 1 74.62 ? PN NDP 301 A 1 HETATM 25 O O1N NDP . . . B 2 -24.916 5.058 -18.023 1 80.55 ? O1N NDP 301 A 1 HETATM 26 O O2N NDP . . . B 2 -23.966 6.169 -15.997 1 71.23 ? O2N NDP 301 A 1 HETATM 27 O O5D NDP . . . B 2 -24.919 7.6 -17.887 1 70.28 ? O5D NDP 301 A 1 HETATM 28 C C5D NDP . . . B 2 -23.653 8.229 -18.008 1 67.39 ? C5D NDP 301 A 1 HETATM 29 C C4D NDP . . . B 2 -22.979 8.461 -19.418 1 70.84 ? C4D NDP 301 A 1 HETATM 30 O O4D NDP . . . B 2 -21.854 7.605 -19.682 1 72.77 ? O4D NDP 301 A 1 HETATM 31 C C3D NDP . . . B 2 -23.861 8.389 -20.57 1 75.56 ? C3D NDP 301 A 1 HETATM 32 O O3D NDP . . . B 2 -23.554 9.429 -21.429 1 77.4 ? O3D NDP 301 A 1 HETATM 33 C C2D NDP . . . B 2 -23.542 7.131 -21.175 1 82.12 ? C2D NDP 301 A 1 HETATM 34 O O2D NDP . . . B 2 -23.863 7.098 -22.545 1 90.5 ? O2D NDP 301 A 1 HETATM 35 C C1D NDP . . . B 2 -22.078 6.931 -20.875 1 79.92 ? C1D NDP 301 A 1 HETATM 36 N N1N NDP . . . B 2 -21.596 5.504 -20.855 1 84.93 ? N1N NDP 301 A 1 HETATM 37 C C2N NDP . . . B 2 -22.319 4.505 -20.273 1 88.6 ? C2N NDP 301 A 1 HETATM 38 C C3N NDP . . . B 2 -21.871 3.176 -20.259 1 95.7 ? C3N NDP 301 A 1 HETATM 39 C C7N NDP . . . B 2 -22.705 2.05 -19.609 1 102.65 ? C7N NDP 301 A 1 HETATM 40 O O7N NDP . . . B 2 -22.264 0.909 -19.54 1 109.74 ? O7N NDP 301 A 1 HETATM 41 N N7N NDP . . . B 2 -24.034 2.311 -19.074 1 103.37 ? N7N NDP 301 A 1 HETATM 42 C C4N NDP . . . B 2 -20.642 2.897 -20.861 1 97.81 ? C4N NDP 301 A 1 HETATM 43 C C5N NDP . . . B 2 -19.901 3.932 -21.448 1 94.22 ? C5N NDP 301 A 1 HETATM 44 C C6N NDP . . . B 2 -20.406 5.233 -21.428 1 88.88 ? C6N NDP 301 A 1 HETATM 45 P P2B NDP . . . B 2 -32.64 12.12 -15.416 1 58.39 ? P2B NDP 301 A 1 HETATM 46 O O1X NDP . . . B 2 -32.442 11.429 -14.104 1 59.84 ? O1X NDP 301 A 1 HETATM 47 O O2X NDP . . . B 2 -33.485 13.358 -15.223 1 58.68 ? O2X NDP 301 A 1 HETATM 48 O O3X NDP . . . B 2 -33.364 11.167 -16.329 1 66.69 ? O3X NDP 301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #