data_4HBH # _model_server_result.job_id iztOFRGUNtG8anbK6jOxWw _model_server_result.datetime_utc '2024-11-24 15:31:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hbh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4HBH # _exptl.entry_id 4HBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 911.504 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BACTERIOCHLOROPHYLL A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4HBH _cell.length_a 139.72 _cell.length_b 139.72 _cell.length_c 183.98 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 I N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 190 L HIS 190 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc2 A NE2 HIS 230 L HIS 230 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc3 B NE2 HIS 219 M HIS 219 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc4 B OE2 GLU 234 M GLU 234 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc5 B OE1 GLU 234 M GLU 234 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc6 B NE2 HIS 266 M HIS 266 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? # _chem_comp.formula 'C55 H74 Mg N4 O6' _chem_comp.formula_weight 911.504 _chem_comp.id BCL _chem_comp.mon_nstd_flag . _chem_comp.name 'BACTERIOCHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA BCL sing 70 n n MG NB BCL sing 71 n n MG NC BCL sing 72 n n MG ND BCL sing 73 n n CHA C1A BCL sing 74 n n CHA C4D BCL doub 75 n n CHA CBD BCL sing 76 n n CHB C4A BCL doub 77 n n CHB C1B BCL sing 78 n n CHB HHB BCL sing 79 n n CHC C4B BCL sing 80 n n CHC C1C BCL doub 81 n n CHC HHC BCL sing 82 n n CHD C4C BCL sing 83 n n CHD C1D BCL doub 84 n n CHD HHD BCL sing 85 n n NA C1A BCL doub 86 n n NA C4A BCL sing 87 n n C1A C2A BCL sing 88 n n C2A C3A BCL sing 89 n n C2A CAA BCL sing 90 n n C2A H2A BCL sing 91 n n C3A C4A BCL sing 92 n n C3A CMA BCL sing 93 n n C3A H3A BCL sing 94 n n CMA HMA1 BCL sing 95 n n CMA HMA2 BCL sing 96 n n CMA HMA3 BCL sing 97 n n CAA CBA BCL sing 98 n n CAA HAA1 BCL sing 99 n n CAA HAA2 BCL sing 100 n n CBA CGA BCL sing 101 n n CBA HBA1 BCL sing 102 n n CBA HBA2 BCL sing 103 n n CGA O1A BCL doub 104 n n CGA O2A BCL sing 105 n n O2A C1 BCL sing 106 n n NB C1B BCL sing 107 n y NB C4B BCL sing 108 n y C1B C2B BCL doub 109 n y C2B C3B BCL sing 110 n y C2B CMB BCL sing 111 n n C3B C4B BCL doub 112 n y C3B CAB BCL sing 113 n n CMB HMB1 BCL sing 114 n n CMB HMB2 BCL sing 115 n n CMB HMB3 BCL sing 116 n n CAB OBB BCL doub 117 n n CAB CBB BCL sing 118 n n CBB HBB1 BCL sing 119 n n CBB HBB2 BCL sing 120 n n CBB HBB3 BCL sing 121 n n NC C1C BCL sing 122 n n NC C4C BCL doub 123 n n C1C C2C BCL sing 124 n n C2C C3C BCL sing 125 n n C2C CMC BCL sing 126 n n C2C H2C BCL sing 127 n n C3C C4C BCL sing 128 n n C3C CAC BCL sing 129 n n C3C H3C BCL sing 130 n n CMC HMC1 BCL sing 131 n n CMC HMC2 BCL sing 132 n n CMC HMC3 BCL sing 133 n n CAC CBC BCL sing 134 n n CAC HAC1 BCL sing 135 n n CAC HAC2 BCL sing 136 n n CBC HBC1 BCL sing 137 n n CBC HBC2 BCL sing 138 n n CBC HBC3 BCL sing 139 n n ND C1D BCL sing 140 n y ND C4D BCL sing 141 n y C1D C2D BCL sing 142 n y C2D C3D BCL doub 143 n y C2D CMD BCL sing 144 n n C3D C4D BCL sing 145 n y C3D CAD BCL sing 146 n n CMD HMD1 BCL sing 147 n n CMD HMD2 BCL sing 148 n n CMD HMD3 BCL sing 149 n n CAD OBD BCL doub 150 n n CAD CBD BCL sing 151 n n CBD CGD BCL sing 152 n n CBD HBD BCL sing 153 n n CGD O1D BCL doub 154 n n CGD O2D BCL sing 155 n n O2D CED BCL sing 156 n n CED HED1 BCL sing 157 n n CED HED2 BCL sing 158 n n CED HED3 BCL sing 159 n n C1 C2 BCL sing 160 n n C1 H11 BCL sing 161 n n C1 H12 BCL sing 162 n n C2 C3 BCL doub 163 e n C2 H2 BCL sing 164 n n C3 C4 BCL sing 165 n n C3 C5 BCL sing 166 n n C4 H41 BCL sing 167 n n C4 H42 BCL sing 168 n n C4 H43 BCL sing 169 n n C5 C6 BCL sing 170 n n C5 H51 BCL sing 171 n n C5 H52 BCL sing 172 n n C6 C7 BCL sing 173 n n C6 H61 BCL sing 174 n n C6 H62 BCL sing 175 n n C7 C8 BCL sing 176 n n C7 H71 BCL sing 177 n n C7 H72 BCL sing 178 n n C8 C9 BCL sing 179 n n C8 C10 BCL sing 180 n n C8 H8 BCL sing 181 n n C9 H91 BCL sing 182 n n C9 H92 BCL sing 183 n n C9 H93 BCL sing 184 n n C10 C11 BCL sing 185 n n C10 H101 BCL sing 186 n n C10 H102 BCL sing 187 n n C11 C12 BCL sing 188 n n C11 H111 BCL sing 189 n n C11 H112 BCL sing 190 n n C12 C13 BCL sing 191 n n C12 H121 BCL sing 192 n n C12 H122 BCL sing 193 n n C13 C14 BCL sing 194 n n C13 C15 BCL sing 195 n n C13 H13 BCL sing 196 n n C14 H141 BCL sing 197 n n C14 H142 BCL sing 198 n n C14 H143 BCL sing 199 n n C15 C16 BCL sing 200 n n C15 H151 BCL sing 201 n n C15 H152 BCL sing 202 n n C16 C17 BCL sing 203 n n C16 H161 BCL sing 204 n n C16 H162 BCL sing 205 n n C17 C18 BCL sing 206 n n C17 H171 BCL sing 207 n n C17 H172 BCL sing 208 n n C18 C19 BCL sing 209 n n C18 C20 BCL sing 210 n n C18 H18 BCL sing 211 n n C19 H191 BCL sing 212 n n C19 H192 BCL sing 213 n n C19 H193 BCL sing 214 n n C20 H201 BCL sing 215 n n C20 H202 BCL sing 216 n n C20 H203 BCL sing 217 n n # _atom_sites.entry_id 4HBH _atom_sites.fract_transf_matrix[1][1] 0.007157 _atom_sites.fract_transf_matrix[1][2] 0.004132 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 301 302 BCL BCL . E 4 BCL L 1 302 304 BCL BCL . F 5 BPH L 1 303 402 BPH BPH . G 6 U10 L 1 304 502 U10 U10 . H 6 U10 L 1 305 503 U10 U10 . I 4 BCL M 1 401 301 BCL BCL . J 7 FE M 1 402 500 FE FE . K 4 BCL M 1 403 801 BCL BCL . L 5 BPH M 1 404 401 BPH BPH . M 6 U10 M 1 405 501 U10 U10 . N 8 SPO M 1 406 600 SPO SPO . O 9 HOH L 1 401 7 HOH HOH . O 9 HOH L 2 402 15 HOH HOH . O 9 HOH L 3 403 16 HOH HOH . O 9 HOH L 4 404 24 HOH HOH . O 9 HOH L 5 405 27 HOH HOH . O 9 HOH L 6 406 29 HOH HOH . O 9 HOH L 7 407 44 HOH HOH . O 9 HOH L 8 408 45 HOH HOH . P 9 HOH M 1 501 3 HOH HOH . P 9 HOH M 2 502 4 HOH HOH . P 9 HOH M 3 503 12 HOH HOH . P 9 HOH M 4 504 13 HOH HOH . P 9 HOH M 5 505 14 HOH HOH . P 9 HOH M 6 506 21 HOH HOH . P 9 HOH M 7 507 40 HOH HOH . P 9 HOH M 8 508 41 HOH HOH . P 9 HOH M 9 509 47 HOH HOH . P 9 HOH M 10 510 50 HOH HOH . P 9 HOH M 11 511 53 HOH HOH . Q 9 HOH H 1 301 17 HOH HOH . Q 9 HOH H 2 302 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG BCL . . . D 4 19.349 93.159 39.726 1 40.59 ? MG BCL 301 L 1 HETATM 2 C CHA BCL . . . D 4 16.536 91.41 38.533 1 40.55 ? CHA BCL 301 L 1 HETATM 3 C CHB BCL . . . D 4 21.189 91.22 37.668 1 37.76 ? CHB BCL 301 L 1 HETATM 4 C CHC BCL . . . D 4 21.844 95.374 39.939 1 43.75 ? CHC BCL 301 L 1 HETATM 5 C CHD BCL . . . D 4 17.174 95.519 40.987 1 40 ? CHD BCL 301 L 1 HETATM 6 N NA BCL . . . D 4 18.932 91.674 38.402 1 40.99 ? NA BCL 301 L 1 HETATM 7 C C1A BCL . . . D 4 17.759 91.027 38.127 1 40.1 ? C1A BCL 301 L 1 HETATM 8 C C2A BCL . . . D 4 17.91 89.805 37.264 1 39.9 ? C2A BCL 301 L 1 HETATM 9 C C3A BCL . . . D 4 19.405 89.488 37.515 1 38.19 ? C3A BCL 301 L 1 HETATM 10 C C4A BCL . . . D 4 19.92 90.879 37.892 1 38.91 ? C4A BCL 301 L 1 HETATM 11 C CMA BCL . . . D 4 19.619 88.422 38.603 1 33.65 ? CMA BCL 301 L 1 HETATM 12 C CAA BCL . . . D 4 17.531 90.126 35.791 1 39.41 ? CAA BCL 301 L 1 HETATM 13 C CBA BCL . . . D 4 17.376 88.897 34.853 1 39.31 ? CBA BCL 301 L 1 HETATM 14 C CGA BCL . . . D 4 16.108 88.07 35.028 1 38.14 ? CGA BCL 301 L 1 HETATM 15 O O1A BCL . . . D 4 15.546 88.02 36.099 1 39.39 ? O1A BCL 301 L 1 HETATM 16 O O2A BCL . . . D 4 15.595 87.384 33.987 1 36.61 ? O2A BCL 301 L 1 HETATM 17 N NB BCL . . . D 4 21.154 93.27 38.937 1 42.98 ? NB BCL 301 L 1 HETATM 18 C C1B BCL . . . D 4 21.802 92.377 38.062 1 40.89 ? C1B BCL 301 L 1 HETATM 19 C C2B BCL . . . D 4 23.07 92.83 37.722 1 41.81 ? C2B BCL 301 L 1 HETATM 20 C C3B BCL . . . D 4 23.282 94.049 38.383 1 42.95 ? C3B BCL 301 L 1 HETATM 21 C C4B BCL . . . D 4 22.111 94.299 39.125 1 43.45 ? C4B BCL 301 L 1 HETATM 22 C CMB BCL . . . D 4 24.069 92.137 36.813 1 38.88 ? CMB BCL 301 L 1 HETATM 23 C CAB BCL . . . D 4 24.498 94.908 38.384 1 43.95 ? CAB BCL 301 L 1 HETATM 24 O OBB BCL . . . D 4 24.599 95.801 39.198 1 41.65 ? OBB BCL 301 L 1 HETATM 25 C CBB BCL . . . D 4 25.666 94.69 37.452 1 43.14 ? CBB BCL 301 L 1 HETATM 26 N NC BCL . . . D 4 19.449 95.169 40.19 1 42.24 ? NC BCL 301 L 1 HETATM 27 C C1C BCL . . . D 4 20.607 95.877 40.311 1 40.75 ? C1C BCL 301 L 1 HETATM 28 C C2C BCL . . . D 4 20.425 97.257 40.886 1 33.92 ? C2C BCL 301 L 1 HETATM 29 C C3C BCL . . . D 4 18.911 97.309 41.108 1 36.31 ? C3C BCL 301 L 1 HETATM 30 C C4C BCL . . . D 4 18.445 95.907 40.747 1 39.02 ? C4C BCL 301 L 1 HETATM 31 C CMC BCL . . . D 4 21.071 97.368 42.245 1 31.41 ? CMC BCL 301 L 1 HETATM 32 C CAC BCL . . . D 4 18.217 98.392 40.233 1 35.86 ? CAC BCL 301 L 1 HETATM 33 C CBC BCL . . . D 4 18.754 99.783 40.535 1 29.66 ? CBC BCL 301 L 1 HETATM 34 N ND BCL . . . D 4 17.425 93.493 39.706 1 42.12 ? ND BCL 301 L 1 HETATM 35 C C1D BCL . . . D 4 16.628 94.407 40.368 1 41.82 ? C1D BCL 301 L 1 HETATM 36 C C2D BCL . . . D 4 15.294 94.098 40.325 1 42.51 ? C2D BCL 301 L 1 HETATM 37 C C3D BCL . . . D 4 15.138 92.937 39.617 1 42.72 ? C3D BCL 301 L 1 HETATM 38 C C4D BCL . . . D 4 16.451 92.594 39.263 1 42.5 ? C4D BCL 301 L 1 HETATM 39 C CMD BCL . . . D 4 14.169 94.875 40.934 1 41.89 ? CMD BCL 301 L 1 HETATM 40 C CAD BCL . . . D 4 14.245 91.912 39.073 1 42.33 ? CAD BCL 301 L 1 HETATM 41 O OBD BCL . . . D 4 13.029 91.887 39.185 1 41.92 ? OBD BCL 301 L 1 HETATM 42 C CBD BCL . . . D 4 15.136 90.928 38.305 1 40.36 ? CBD BCL 301 L 1 HETATM 43 C CGD BCL . . . D 4 14.809 89.542 38.733 1 38.57 ? CGD BCL 301 L 1 HETATM 44 O O1D BCL . . . D 4 15.486 88.975 39.556 1 38.88 ? O1D BCL 301 L 1 HETATM 45 O O2D BCL . . . D 4 13.716 88.995 38.182 1 35.27 ? O2D BCL 301 L 1 HETATM 46 C CED BCL . . . D 4 13.144 87.818 38.778 1 33.68 ? CED BCL 301 L 1 HETATM 47 C C1 BCL . . . D 4 14.33 86.658 34.021 1 35.55 ? C1 BCL 301 L 1 HETATM 48 C C2 BCL . . . D 4 13.888 86.792 32.595 1 35.76 ? C2 BCL 301 L 1 HETATM 49 C C3 BCL . . . D 4 12.692 87.165 32.185 1 36.24 ? C3 BCL 301 L 1 HETATM 50 C C4 BCL . . . D 4 11.612 87.473 33.18 1 36.9 ? C4 BCL 301 L 1 HETATM 51 C C5 BCL . . . D 4 12.38 87.278 30.693 1 34.48 ? C5 BCL 301 L 1 HETATM 52 C C6 BCL . . . D 4 11.087 86.506 30.395 1 35.9 ? C6 BCL 301 L 1 HETATM 53 C C7 BCL . . . D 4 10.913 86.189 28.893 1 34.94 ? C7 BCL 301 L 1 HETATM 54 C C8 BCL . . . D 4 9.459 85.75 28.607 1 31.87 ? C8 BCL 301 L 1 HETATM 55 C C9 BCL . . . D 4 9.226 84.335 29.186 1 32.42 ? C9 BCL 301 L 1 HETATM 56 C C10 BCL . . . D 4 9.188 85.708 27.102 1 30.76 ? C10 BCL 301 L 1 HETATM 57 C C11 BCL . . . D 4 9.114 87.091 26.457 1 31.3 ? C11 BCL 301 L 1 HETATM 58 C C12 BCL . . . D 4 9.048 86.954 24.929 1 33.06 ? C12 BCL 301 L 1 HETATM 59 C C13 BCL . . . D 4 8.915 88.323 24.256 1 36.77 ? C13 BCL 301 L 1 HETATM 60 C C14 BCL . . . D 4 7.714 89.087 24.807 1 37.16 ? C14 BCL 301 L 1 HETATM 61 C C15 BCL . . . D 4 8.573 88.08 22.8 1 40.12 ? C15 BCL 301 L 1 HETATM 62 C C16 BCL . . . D 4 9.275 89.109 21.929 1 43.33 ? C16 BCL 301 L 1 HETATM 63 C C17 BCL . . . D 4 8.763 88.923 20.5 1 48.25 ? C17 BCL 301 L 1 HETATM 64 C C18 BCL . . . D 4 9.959 88.69 19.576 1 52.81 ? C18 BCL 301 L 1 HETATM 65 C C19 BCL . . . D 4 9.512 87.833 18.378 1 52.47 ? C19 BCL 301 L 1 HETATM 66 C C20 BCL . . . D 4 10.53 90.04 19.094 1 55.2 ? C20 BCL 301 L 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 66 #