data_4HBH # _model_server_result.job_id U6w9X1KjG0mL8UJPbYrstA _model_server_result.datetime_utc '2024-11-24 15:29:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hbh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 4HBH # _exptl.entry_id 4HBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 911.504 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BACTERIOCHLOROPHYLL A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4HBH _cell.length_a 139.72 _cell.length_b 139.72 _cell.length_c 183.98 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 I N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 190 L HIS 190 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc2 A NE2 HIS 230 L HIS 230 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc3 B NE2 HIS 219 M HIS 219 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc4 B OE2 GLU 234 M GLU 234 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc5 B OE1 GLU 234 M GLU 234 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc6 B NE2 HIS 266 M HIS 266 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? # _chem_comp.formula 'C55 H74 Mg N4 O6' _chem_comp.formula_weight 911.504 _chem_comp.id BCL _chem_comp.mon_nstd_flag . _chem_comp.name 'BACTERIOCHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA BCL sing 70 n n MG NB BCL sing 71 n n MG NC BCL sing 72 n n MG ND BCL sing 73 n n CHA C1A BCL sing 74 n n CHA C4D BCL doub 75 n n CHA CBD BCL sing 76 n n CHB C4A BCL doub 77 n n CHB C1B BCL sing 78 n n CHB HHB BCL sing 79 n n CHC C4B BCL sing 80 n n CHC C1C BCL doub 81 n n CHC HHC BCL sing 82 n n CHD C4C BCL sing 83 n n CHD C1D BCL doub 84 n n CHD HHD BCL sing 85 n n NA C1A BCL doub 86 n n NA C4A BCL sing 87 n n C1A C2A BCL sing 88 n n C2A C3A BCL sing 89 n n C2A CAA BCL sing 90 n n C2A H2A BCL sing 91 n n C3A C4A BCL sing 92 n n C3A CMA BCL sing 93 n n C3A H3A BCL sing 94 n n CMA HMA1 BCL sing 95 n n CMA HMA2 BCL sing 96 n n CMA HMA3 BCL sing 97 n n CAA CBA BCL sing 98 n n CAA HAA1 BCL sing 99 n n CAA HAA2 BCL sing 100 n n CBA CGA BCL sing 101 n n CBA HBA1 BCL sing 102 n n CBA HBA2 BCL sing 103 n n CGA O1A BCL doub 104 n n CGA O2A BCL sing 105 n n O2A C1 BCL sing 106 n n NB C1B BCL sing 107 n y NB C4B BCL sing 108 n y C1B C2B BCL doub 109 n y C2B C3B BCL sing 110 n y C2B CMB BCL sing 111 n n C3B C4B BCL doub 112 n y C3B CAB BCL sing 113 n n CMB HMB1 BCL sing 114 n n CMB HMB2 BCL sing 115 n n CMB HMB3 BCL sing 116 n n CAB OBB BCL doub 117 n n CAB CBB BCL sing 118 n n CBB HBB1 BCL sing 119 n n CBB HBB2 BCL sing 120 n n CBB HBB3 BCL sing 121 n n NC C1C BCL sing 122 n n NC C4C BCL doub 123 n n C1C C2C BCL sing 124 n n C2C C3C BCL sing 125 n n C2C CMC BCL sing 126 n n C2C H2C BCL sing 127 n n C3C C4C BCL sing 128 n n C3C CAC BCL sing 129 n n C3C H3C BCL sing 130 n n CMC HMC1 BCL sing 131 n n CMC HMC2 BCL sing 132 n n CMC HMC3 BCL sing 133 n n CAC CBC BCL sing 134 n n CAC HAC1 BCL sing 135 n n CAC HAC2 BCL sing 136 n n CBC HBC1 BCL sing 137 n n CBC HBC2 BCL sing 138 n n CBC HBC3 BCL sing 139 n n ND C1D BCL sing 140 n y ND C4D BCL sing 141 n y C1D C2D BCL sing 142 n y C2D C3D BCL doub 143 n y C2D CMD BCL sing 144 n n C3D C4D BCL sing 145 n y C3D CAD BCL sing 146 n n CMD HMD1 BCL sing 147 n n CMD HMD2 BCL sing 148 n n CMD HMD3 BCL sing 149 n n CAD OBD BCL doub 150 n n CAD CBD BCL sing 151 n n CBD CGD BCL sing 152 n n CBD HBD BCL sing 153 n n CGD O1D BCL doub 154 n n CGD O2D BCL sing 155 n n O2D CED BCL sing 156 n n CED HED1 BCL sing 157 n n CED HED2 BCL sing 158 n n CED HED3 BCL sing 159 n n C1 C2 BCL sing 160 n n C1 H11 BCL sing 161 n n C1 H12 BCL sing 162 n n C2 C3 BCL doub 163 e n C2 H2 BCL sing 164 n n C3 C4 BCL sing 165 n n C3 C5 BCL sing 166 n n C4 H41 BCL sing 167 n n C4 H42 BCL sing 168 n n C4 H43 BCL sing 169 n n C5 C6 BCL sing 170 n n C5 H51 BCL sing 171 n n C5 H52 BCL sing 172 n n C6 C7 BCL sing 173 n n C6 H61 BCL sing 174 n n C6 H62 BCL sing 175 n n C7 C8 BCL sing 176 n n C7 H71 BCL sing 177 n n C7 H72 BCL sing 178 n n C8 C9 BCL sing 179 n n C8 C10 BCL sing 180 n n C8 H8 BCL sing 181 n n C9 H91 BCL sing 182 n n C9 H92 BCL sing 183 n n C9 H93 BCL sing 184 n n C10 C11 BCL sing 185 n n C10 H101 BCL sing 186 n n C10 H102 BCL sing 187 n n C11 C12 BCL sing 188 n n C11 H111 BCL sing 189 n n C11 H112 BCL sing 190 n n C12 C13 BCL sing 191 n n C12 H121 BCL sing 192 n n C12 H122 BCL sing 193 n n C13 C14 BCL sing 194 n n C13 C15 BCL sing 195 n n C13 H13 BCL sing 196 n n C14 H141 BCL sing 197 n n C14 H142 BCL sing 198 n n C14 H143 BCL sing 199 n n C15 C16 BCL sing 200 n n C15 H151 BCL sing 201 n n C15 H152 BCL sing 202 n n C16 C17 BCL sing 203 n n C16 H161 BCL sing 204 n n C16 H162 BCL sing 205 n n C17 C18 BCL sing 206 n n C17 H171 BCL sing 207 n n C17 H172 BCL sing 208 n n C18 C19 BCL sing 209 n n C18 C20 BCL sing 210 n n C18 H18 BCL sing 211 n n C19 H191 BCL sing 212 n n C19 H192 BCL sing 213 n n C19 H193 BCL sing 214 n n C20 H201 BCL sing 215 n n C20 H202 BCL sing 216 n n C20 H203 BCL sing 217 n n # _atom_sites.entry_id 4HBH _atom_sites.fract_transf_matrix[1][1] 0.007157 _atom_sites.fract_transf_matrix[1][2] 0.004132 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 301 302 BCL BCL . E 4 BCL L 1 302 304 BCL BCL . F 5 BPH L 1 303 402 BPH BPH . G 6 U10 L 1 304 502 U10 U10 . H 6 U10 L 1 305 503 U10 U10 . I 4 BCL M 1 401 301 BCL BCL . J 7 FE M 1 402 500 FE FE . K 4 BCL M 1 403 801 BCL BCL . L 5 BPH M 1 404 401 BPH BPH . M 6 U10 M 1 405 501 U10 U10 . N 8 SPO M 1 406 600 SPO SPO . O 9 HOH L 1 401 7 HOH HOH . O 9 HOH L 2 402 15 HOH HOH . O 9 HOH L 3 403 16 HOH HOH . O 9 HOH L 4 404 24 HOH HOH . O 9 HOH L 5 405 27 HOH HOH . O 9 HOH L 6 406 29 HOH HOH . O 9 HOH L 7 407 44 HOH HOH . O 9 HOH L 8 408 45 HOH HOH . P 9 HOH M 1 501 3 HOH HOH . P 9 HOH M 2 502 4 HOH HOH . P 9 HOH M 3 503 12 HOH HOH . P 9 HOH M 4 504 13 HOH HOH . P 9 HOH M 5 505 14 HOH HOH . P 9 HOH M 6 506 21 HOH HOH . P 9 HOH M 7 507 40 HOH HOH . P 9 HOH M 8 508 41 HOH HOH . P 9 HOH M 9 509 47 HOH HOH . P 9 HOH M 10 510 50 HOH HOH . P 9 HOH M 11 511 53 HOH HOH . Q 9 HOH H 1 301 17 HOH HOH . Q 9 HOH H 2 302 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG BCL . . . E 4 13.551 94.083 29.988 1 30.5 ? MG BCL 302 L 1 HETATM 2 C CHA BCL . . . E 4 16.351 95.533 28.477 1 31.21 ? CHA BCL 302 L 1 HETATM 3 C CHB BCL . . . E 4 12.449 93.213 26.966 1 28 ? CHB BCL 302 L 1 HETATM 4 C CHC BCL . . . E 4 11.468 91.846 31.461 1 31.21 ? CHC BCL 302 L 1 HETATM 5 C CHD BCL . . . E 4 15.159 94.462 33.05 1 29.98 ? CHD BCL 302 L 1 HETATM 6 N NA BCL . . . E 4 14.335 94.295 28.124 1 28.63 ? NA BCL 302 L 1 HETATM 7 C C1A BCL . . . E 4 15.442 94.954 27.678 1 29.99 ? C1A BCL 302 L 1 HETATM 8 C C2A BCL . . . E 4 15.59 95.038 26.178 1 30.9 ? C2A BCL 302 L 1 HETATM 9 C C3A BCL . . . E 4 14.127 94.715 25.784 1 31.42 ? C3A BCL 302 L 1 HETATM 10 C C4A BCL . . . E 4 13.554 94.026 27.035 1 30.02 ? C4A BCL 302 L 1 HETATM 11 C CMA BCL . . . E 4 13.287 95.913 25.288 1 32.13 ? CMA BCL 302 L 1 HETATM 12 C CAA BCL . . . E 4 16.565 93.959 25.626 1 32.41 ? CAA BCL 302 L 1 HETATM 13 C CBA BCL . . . E 4 16.314 92.56 26.269 1 35.42 ? CBA BCL 302 L 1 HETATM 14 C CGA BCL . . . E 4 17.156 91.405 25.772 1 39.31 ? CGA BCL 302 L 1 HETATM 15 O O1A BCL . . . E 4 17.932 91.576 24.879 1 40.53 ? O1A BCL 302 L 1 HETATM 16 O O2A BCL . . . E 4 17.076 90.158 26.307 1 42.58 ? O2A BCL 302 L 1 HETATM 17 N NB BCL . . . E 4 12.239 92.757 29.354 1 29.8 ? NB BCL 302 L 1 HETATM 18 C C1B BCL . . . E 4 11.841 92.553 28.029 1 29.45 ? C1B BCL 302 L 1 HETATM 19 C C2B BCL . . . E 4 10.821 91.639 28.005 1 30.7 ? C2B BCL 302 L 1 HETATM 20 C C3B BCL . . . E 4 10.517 91.21 29.31 1 31.74 ? C3B BCL 302 L 1 HETATM 21 C C4B BCL . . . E 4 11.392 91.924 30.115 1 30.35 ? C4B BCL 302 L 1 HETATM 22 C CMB BCL . . . E 4 10.131 91.157 26.76 1 31.73 ? CMB BCL 302 L 1 HETATM 23 C CAB BCL . . . E 4 9.466 90.213 29.758 1 33.97 ? CAB BCL 302 L 1 HETATM 24 O OBB BCL . . . E 4 9.396 89.741 30.907 1 32.2 ? OBB BCL 302 L 1 HETATM 25 C CBB BCL . . . E 4 8.415 89.722 28.769 1 33.21 ? CBB BCL 302 L 1 HETATM 26 N NC BCL . . . E 4 13.319 93.351 31.879 1 28.88 ? NC BCL 302 L 1 HETATM 27 C C1C BCL . . . E 4 12.296 92.581 32.266 1 30.98 ? C1C BCL 302 L 1 HETATM 28 C C2C BCL . . . E 4 12.176 92.504 33.752 1 30.75 ? C2C BCL 302 L 1 HETATM 29 C C3C BCL . . . E 4 13.583 92.954 34.21 1 29.28 ? C3C BCL 302 L 1 HETATM 30 C C4C BCL . . . E 4 14.075 93.654 32.969 1 29.39 ? C4C BCL 302 L 1 HETATM 31 C CMC BCL . . . E 4 11.043 93.389 34.259 1 30.9 ? CMC BCL 302 L 1 HETATM 32 C CAC BCL . . . E 4 14.428 91.734 34.628 1 28.06 ? CAC BCL 302 L 1 HETATM 33 C CBC BCL . . . E 4 14.614 90.697 33.502 1 28.18 ? CBC BCL 302 L 1 HETATM 34 N ND BCL . . . E 4 15.296 94.684 30.603 1 27.86 ? ND BCL 302 L 1 HETATM 35 C C1D BCL . . . E 4 15.764 94.959 31.884 1 30.13 ? C1D BCL 302 L 1 HETATM 36 C C2D BCL . . . E 4 16.857 95.777 31.893 1 31.64 ? C2D BCL 302 L 1 HETATM 37 C C3D BCL . . . E 4 17.16 96.058 30.583 1 32.33 ? C3D BCL 302 L 1 HETATM 38 C C4D BCL . . . E 4 16.195 95.381 29.837 1 28.65 ? C4D BCL 302 L 1 HETATM 39 C CMD BCL . . . E 4 17.589 96.259 33.12 1 33.18 ? CMD BCL 302 L 1 HETATM 40 C CAD BCL . . . E 4 18.05 96.732 29.658 1 34.8 ? CAD BCL 302 L 1 HETATM 41 O OBD BCL . . . E 4 18.99 97.409 30.042 1 36.41 ? OBD BCL 302 L 1 HETATM 42 C CBD BCL . . . E 4 17.582 96.35 28.256 1 35.14 ? CBD BCL 302 L 1 HETATM 43 C CGD BCL . . . E 4 17.305 97.6 27.534 1 42.68 ? CGD BCL 302 L 1 HETATM 44 O O1D BCL . . . E 4 18.226 97.895 26.849 1 45.24 ? O1D BCL 302 L 1 HETATM 45 O O2D BCL . . . E 4 16.154 98.342 27.686 1 44.77 ? O2D BCL 302 L 1 HETATM 46 C CED BCL . . . E 4 15.971 99.606 27.014 1 42.79 ? CED BCL 302 L 1 HETATM 47 C C1 BCL . . . E 4 17.799 89.015 25.739 1 39.4 ? C1 BCL 302 L 1 HETATM 48 C C2 BCL . . . E 4 16.939 88.502 24.621 1 39.18 ? C2 BCL 302 L 1 HETATM 49 C C3 BCL . . . E 4 17.257 88.484 23.341 1 38.71 ? C3 BCL 302 L 1 HETATM 50 C C4 BCL . . . E 4 18.587 88.946 22.782 1 34.09 ? C4 BCL 302 L 1 HETATM 51 C C5 BCL . . . E 4 16.172 87.987 22.414 1 39.84 ? C5 BCL 302 L 1 HETATM 52 C C6 BCL . . . E 4 15.483 89.2 21.69 1 39.7 ? C6 BCL 302 L 1 HETATM 53 C C7 BCL . . . E 4 14.459 89.937 22.573 1 35.75 ? C7 BCL 302 L 1 HETATM 54 C C8 BCL . . . E 4 13.846 91.14 21.841 1 39.29 ? C8 BCL 302 L 1 HETATM 55 C C9 BCL . . . E 4 14.818 92.352 21.655 1 37.14 ? C9 BCL 302 L 1 HETATM 56 C C10 BCL . . . E 4 12.598 91.519 22.674 1 40.63 ? C10 BCL 302 L 1 HETATM 57 C C11 BCL . . . E 4 11.705 92.584 22.024 1 39.52 ? C11 BCL 302 L 1 HETATM 58 C C12 BCL . . . E 4 10.709 93.087 23.065 1 40.95 ? C12 BCL 302 L 1 HETATM 59 C C13 BCL . . . E 4 9.729 94.046 22.372 1 44.07 ? C13 BCL 302 L 1 HETATM 60 C C14 BCL . . . E 4 10.402 95.412 22.142 1 44.09 ? C14 BCL 302 L 1 HETATM 61 C C15 BCL . . . E 4 8.472 94.229 23.226 1 45.51 ? C15 BCL 302 L 1 HETATM 62 C C16 BCL . . . E 4 7.403 93.21 22.823 1 48.88 ? C16 BCL 302 L 1 HETATM 63 C C17 BCL . . . E 4 6.27 93.867 22.024 1 50.19 ? C17 BCL 302 L 1 HETATM 64 C C18 BCL . . . E 4 5.906 92.879 20.924 1 53.19 ? C18 BCL 302 L 1 HETATM 65 C C19 BCL . . . E 4 4.821 91.951 21.439 1 52.94 ? C19 BCL 302 L 1 HETATM 66 C C20 BCL . . . E 4 5.334 93.613 19.707 1 55.99 ? C20 BCL 302 L 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 66 #