data_4HBH # _model_server_result.job_id QafJ9ruliQMvLyGcCP0Ujw _model_server_result.datetime_utc '2024-11-24 16:03:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hbh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 4HBH # _exptl.entry_id 4HBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 889.215 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BACTERIOPHEOPHYTIN A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4HBH _cell.length_a 139.72 _cell.length_b 139.72 _cell.length_c 183.98 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 190 L HIS 190 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc2 A NE2 HIS 230 L HIS 230 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc3 B NE2 HIS 219 M HIS 219 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc4 B OE2 GLU 234 M GLU 234 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc5 B OE1 GLU 234 M GLU 234 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc6 B NE2 HIS 266 M HIS 266 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? # _chem_comp.formula 'C55 H76 N4 O6' _chem_comp.formula_weight 889.215 _chem_comp.id BPH _chem_comp.mon_nstd_flag . _chem_comp.name 'BACTERIOPHEOPHYTIN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1D CGD BPH doub 218 n n CGD O2D BPH sing 219 n n CGD CBD BPH sing 220 n n O2D CED BPH sing 221 n n CBD CHA BPH sing 222 n n CBD CAD BPH sing 223 n n CHA C4D BPH doub 224 n y CHA C1A BPH sing 225 n y C4D C3D BPH sing 226 n y C4D ND BPH sing 227 n y C3D CAD BPH sing 228 n n C3D C2D BPH doub 229 n y CAD OBD BPH doub 230 n n C2D CMD BPH sing 231 n n C2D C1D BPH sing 232 n y C1D ND BPH sing 233 n y C1D CHD BPH doub 234 n y CHD C4C BPH sing 235 n y C4C C3C BPH sing 236 n n C4C NC BPH doub 237 n y C3C CAC BPH sing 238 n n C3C C2C BPH sing 239 n n CAC CBC BPH sing 240 n n C2C CMC BPH sing 241 n n C2C C1C BPH sing 242 n n C1C NC BPH sing 243 n y C1C CHC BPH doub 244 n y CHC C4B BPH sing 245 n y C4B C3B BPH doub 246 n y C4B NB BPH sing 247 n y C3B CAB BPH sing 248 n n C3B C2B BPH sing 249 n y CAB CBB BPH sing 250 n n CAB OBB BPH doub 251 n n C2B CMB BPH sing 252 n n C2B C1B BPH doub 253 n y C1B NB BPH sing 254 n y C1B CHB BPH sing 255 n y CHB C4A BPH doub 256 n y C4A C3A BPH sing 257 n n C4A NA BPH sing 258 n y C3A CMA BPH sing 259 n n C3A C2A BPH sing 260 n n C2A C1A BPH sing 261 n n C2A CAA BPH sing 262 n n C1A NA BPH doub 263 n y CAA CBA BPH sing 264 n n CBA CGA BPH sing 265 n n CGA O1A BPH doub 266 n n CGA O2A BPH sing 267 n n O2A C1 BPH sing 268 n n C1 C2 BPH sing 269 n n C2 C3 BPH doub 270 e n C3 C4 BPH sing 271 n n C3 C5 BPH sing 272 n n C5 C6 BPH sing 273 n n C6 C7 BPH sing 274 n n C7 C8 BPH sing 275 n n C8 C9 BPH sing 276 n n C8 C10 BPH sing 277 n n C10 C11 BPH sing 278 n n C11 C12 BPH sing 279 n n C12 C13 BPH sing 280 n n C13 C14 BPH sing 281 n n C13 C15 BPH sing 282 n n C15 C16 BPH sing 283 n n C16 C17 BPH sing 284 n n C17 C18 BPH sing 285 n n C18 C19 BPH sing 286 n n C18 C20 BPH sing 287 n n CED HED1 BPH sing 288 n n CED HED2 BPH sing 289 n n CED HED3 BPH sing 290 n n CBD HBD BPH sing 291 n n CMD HMD1 BPH sing 292 n n CMD HMD2 BPH sing 293 n n CMD HMD3 BPH sing 294 n n ND HD BPH sing 295 n n CHD HHD BPH sing 296 n n C3C H3C BPH sing 297 n n CAC HAC1 BPH sing 298 n n CAC HAC2 BPH sing 299 n n CBC HBC1 BPH sing 300 n n CBC HBC2 BPH sing 301 n n CBC HBC3 BPH sing 302 n n C2C H2C BPH sing 303 n n CMC HMC1 BPH sing 304 n n CMC HMC2 BPH sing 305 n n CMC HMC3 BPH sing 306 n n CHC HHC BPH sing 307 n n CBB HBB1 BPH sing 308 n n CBB HBB2 BPH sing 309 n n CBB HBB3 BPH sing 310 n n CMB HMB1 BPH sing 311 n n CMB HMB2 BPH sing 312 n n CMB HMB3 BPH sing 313 n n NB HB BPH sing 314 n n CHB HHB BPH sing 315 n n C3A H3A BPH sing 316 n n CMA HMA1 BPH sing 317 n n CMA HMA2 BPH sing 318 n n CMA HMA3 BPH sing 319 n n C2A H2A BPH sing 320 n n CAA HAA1 BPH sing 321 n n CAA HAA2 BPH sing 322 n n CBA HBA1 BPH sing 323 n n CBA HBA2 BPH sing 324 n n C1 H1C1 BPH sing 325 n n C1 H1C2 BPH sing 326 n n C2 H2 BPH sing 327 n n C4 H4C1 BPH sing 328 n n C4 H4C2 BPH sing 329 n n C4 H4C3 BPH sing 330 n n C5 H5C1 BPH sing 331 n n C5 H5C2 BPH sing 332 n n C6 H6C1 BPH sing 333 n n C6 H6C2 BPH sing 334 n n C7 H7C1 BPH sing 335 n n C7 H7C2 BPH sing 336 n n C8 H8 BPH sing 337 n n C9 H9C1 BPH sing 338 n n C9 H9C2 BPH sing 339 n n C9 H9C3 BPH sing 340 n n C10 H101 BPH sing 341 n n C10 H102 BPH sing 342 n n C11 H111 BPH sing 343 n n C11 H112 BPH sing 344 n n C12 H121 BPH sing 345 n n C12 H122 BPH sing 346 n n C13 H13 BPH sing 347 n n C14 H141 BPH sing 348 n n C14 H142 BPH sing 349 n n C14 H143 BPH sing 350 n n C15 H151 BPH sing 351 n n C15 H152 BPH sing 352 n n C16 H161 BPH sing 353 n n C16 H162 BPH sing 354 n n C17 H171 BPH sing 355 n n C17 H172 BPH sing 356 n n C18 H18 BPH sing 357 n n C19 H191 BPH sing 358 n n C19 H192 BPH sing 359 n n C19 H193 BPH sing 360 n n C20 H201 BPH sing 361 n n C20 H202 BPH sing 362 n n C20 H203 BPH sing 363 n n # _atom_sites.entry_id 4HBH _atom_sites.fract_transf_matrix[1][1] 0.007157 _atom_sites.fract_transf_matrix[1][2] 0.004132 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 301 302 BCL BCL . E 4 BCL L 1 302 304 BCL BCL . F 5 BPH L 1 303 402 BPH BPH . G 6 U10 L 1 304 502 U10 U10 . H 6 U10 L 1 305 503 U10 U10 . I 4 BCL M 1 401 301 BCL BCL . J 7 FE M 1 402 500 FE FE . K 4 BCL M 1 403 801 BCL BCL . L 5 BPH M 1 404 401 BPH BPH . M 6 U10 M 1 405 501 U10 U10 . N 8 SPO M 1 406 600 SPO SPO . O 9 HOH L 1 401 7 HOH HOH . O 9 HOH L 2 402 15 HOH HOH . O 9 HOH L 3 403 16 HOH HOH . O 9 HOH L 4 404 24 HOH HOH . O 9 HOH L 5 405 27 HOH HOH . O 9 HOH L 6 406 29 HOH HOH . O 9 HOH L 7 407 44 HOH HOH . O 9 HOH L 8 408 45 HOH HOH . P 9 HOH M 1 501 3 HOH HOH . P 9 HOH M 2 502 4 HOH HOH . P 9 HOH M 3 503 12 HOH HOH . P 9 HOH M 4 504 13 HOH HOH . P 9 HOH M 5 505 14 HOH HOH . P 9 HOH M 6 506 21 HOH HOH . P 9 HOH M 7 507 40 HOH HOH . P 9 HOH M 8 508 41 HOH HOH . P 9 HOH M 9 509 47 HOH HOH . P 9 HOH M 10 510 50 HOH HOH . P 9 HOH M 11 511 53 HOH HOH . Q 9 HOH H 1 301 17 HOH HOH . Q 9 HOH H 2 302 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1D BPH . . . F 5 11.781 80.326 20.788 1 38.84 ? O1D BPH 303 L 1 HETATM 2 C CGD BPH . . . F 5 12.542 80.632 21.714 1 37.35 ? CGD BPH 303 L 1 HETATM 3 O O2D BPH . . . F 5 13.799 81.155 21.576 1 35.48 ? O2D BPH 303 L 1 HETATM 4 C CED BPH . . . F 5 14.119 81.592 20.238 1 30.91 ? CED BPH 303 L 1 HETATM 5 C CBD BPH . . . F 5 12.15 80.468 23.16 1 37.26 ? CBD BPH 303 L 1 HETATM 6 C CHA BPH . . . F 5 12.572 81.605 24.05 1 35.88 ? CHA BPH 303 L 1 HETATM 7 C C4D BPH . . . F 5 13.385 81.191 25.004 1 35.21 ? C4D BPH 303 L 1 HETATM 8 C C3D BPH . . . F 5 13.63 79.762 24.929 1 36.86 ? C3D BPH 303 L 1 HETATM 9 C CAD BPH . . . F 5 12.864 79.277 23.78 1 35.98 ? CAD BPH 303 L 1 HETATM 10 O OBD BPH . . . F 5 12.772 78.138 23.369 1 35.71 ? OBD BPH 303 L 1 HETATM 11 C C2D BPH . . . F 5 14.46 79.37 25.929 1 37.93 ? C2D BPH 303 L 1 HETATM 12 C CMD BPH . . . F 5 15.014 78.033 26.255 1 36.18 ? CMD BPH 303 L 1 HETATM 13 C C1D BPH . . . F 5 14.792 80.605 26.697 1 37.73 ? C1D BPH 303 L 1 HETATM 14 N ND BPH . . . F 5 14.099 81.65 26.038 1 35.35 ? ND BPH 303 L 1 HETATM 15 C CHD BPH . . . F 5 15.622 80.646 27.767 1 35.38 ? CHD BPH 303 L 1 HETATM 16 C C4C BPH . . . F 5 15.89 81.963 28.445 1 35.27 ? C4C BPH 303 L 1 HETATM 17 C C3C BPH . . . F 5 16.794 82.042 29.654 1 32.68 ? C3C BPH 303 L 1 HETATM 18 C CAC BPH . . . F 5 16.309 80.928 30.553 1 34.13 ? CAC BPH 303 L 1 HETATM 19 C CBC BPH . . . F 5 17.395 80.801 31.549 1 39.04 ? CBC BPH 303 L 1 HETATM 20 C C2C BPH . . . F 5 16.444 83.441 30.19 1 30.25 ? C2C BPH 303 L 1 HETATM 21 C CMC BPH . . . F 5 17.67 84.279 30.485 1 26.74 ? CMC BPH 303 L 1 HETATM 22 C C1C BPH . . . F 5 15.688 84.052 29.032 1 32.14 ? C1C BPH 303 L 1 HETATM 23 N NC BPH . . . F 5 15.391 83.109 28.087 1 34.55 ? NC BPH 303 L 1 HETATM 24 C CHC BPH . . . F 5 15.406 85.365 28.93 1 32.53 ? CHC BPH 303 L 1 HETATM 25 C C4B BPH . . . F 5 14.697 86.087 27.919 1 33.18 ? C4B BPH 303 L 1 HETATM 26 C C3B BPH . . . F 5 14.52 87.45 27.843 1 35.84 ? C3B BPH 303 L 1 HETATM 27 C CAB BPH . . . F 5 15.088 88.424 28.731 1 39.07 ? CAB BPH 303 L 1 HETATM 28 C CBB BPH . . . F 5 16.465 88.207 29.307 1 34.1 ? CBB BPH 303 L 1 HETATM 29 O OBB BPH . . . F 5 14.523 89.506 28.993 1 46.33 ? OBB BPH 303 L 1 HETATM 30 C C2B BPH . . . F 5 13.693 87.753 26.733 1 33.59 ? C2B BPH 303 L 1 HETATM 31 C CMB BPH . . . F 5 13.32 89.113 26.326 1 29.14 ? CMB BPH 303 L 1 HETATM 32 C C1B BPH . . . F 5 13.329 86.558 26.126 1 32.78 ? C1B BPH 303 L 1 HETATM 33 N NB BPH . . . F 5 13.985 85.554 26.845 1 31.36 ? NB BPH 303 L 1 HETATM 34 C CHB BPH . . . F 5 12.628 86.348 24.902 1 32.53 ? CHB BPH 303 L 1 HETATM 35 C C4A BPH . . . F 5 12.378 85.187 24.261 1 35 ? C4A BPH 303 L 1 HETATM 36 C C3A BPH . . . F 5 11.73 85.075 22.886 1 34.17 ? C3A BPH 303 L 1 HETATM 37 C CMA BPH . . . F 5 12.756 85.367 21.809 1 30.66 ? CMA BPH 303 L 1 HETATM 38 C C2A BPH . . . F 5 11.345 83.583 22.799 1 35.94 ? C2A BPH 303 L 1 HETATM 39 C C1A BPH . . . F 5 12.201 83.014 23.927 1 37.22 ? C1A BPH 303 L 1 HETATM 40 N NA BPH . . . F 5 12.621 83.916 24.776 1 38.68 ? NA BPH 303 L 1 HETATM 41 C CAA BPH . . . F 5 9.863 83.385 23.081 1 36.52 ? CAA BPH 303 L 1 HETATM 42 C CBA BPH . . . F 5 9.012 83.765 21.867 1 37.79 ? CBA BPH 303 L 1 HETATM 43 C CGA BPH . . . F 5 7.569 83.531 22.287 1 40.36 ? CGA BPH 303 L 1 HETATM 44 O O1A BPH . . . F 5 7.247 83.077 23.392 1 40.22 ? O1A BPH 303 L 1 HETATM 45 O O2A BPH . . . F 5 6.683 83.895 21.298 1 40.57 ? O2A BPH 303 L 1 HETATM 46 C C1 BPH . . . F 5 5.32 83.993 21.757 1 40.93 ? C1 BPH 303 L 1 HETATM 47 C C2 BPH . . . F 5 4.834 85.411 21.818 1 39.3 ? C2 BPH 303 L 1 HETATM 48 C C3 BPH . . . F 5 4.91 86.35 20.847 1 40 ? C3 BPH 303 L 1 HETATM 49 C C4 BPH . . . F 5 5.539 86.139 19.47 1 34.33 ? C4 BPH 303 L 1 HETATM 50 C C5 BPH . . . F 5 4.362 87.787 21.017 1 41.48 ? C5 BPH 303 L 1 HETATM 51 C C6 BPH . . . F 5 4.245 88.626 22.308 1 38.07 ? C6 BPH 303 L 1 HETATM 52 C C7 BPH . . . F 5 2.868 88.4 22.918 1 40.51 ? C7 BPH 303 L 1 HETATM 53 C C8 BPH . . . F 5 1.926 89.556 23.403 1 40.73 ? C8 BPH 303 L 1 HETATM 54 C C9 BPH . . . F 5 1.065 89.077 24.604 1 43.78 ? C9 BPH 303 L 1 HETATM 55 C C10 BPH . . . F 5 2.433 91.002 23.679 1 36.86 ? C10 BPH 303 L 1 HETATM 56 C C11 BPH . . . F 5 3.587 91.445 24.593 1 36.64 ? C11 BPH 303 L 1 HETATM 57 C C12 BPH . . . F 5 3.705 90.943 26.043 1 34.68 ? C12 BPH 303 L 1 HETATM 58 C C13 BPH . . . F 5 4.376 91.954 27.018 1 31.87 ? C13 BPH 303 L 1 HETATM 59 C C14 BPH . . . F 5 4.808 91.284 28.317 1 30.64 ? C14 BPH 303 L 1 HETATM 60 C C15 BPH . . . F 5 5.516 92.755 26.383 1 29.93 ? C15 BPH 303 L 1 HETATM 61 C C16 BPH . . . F 5 6.463 93.262 27.476 1 32.36 ? C16 BPH 303 L 1 HETATM 62 C C17 BPH . . . F 5 7.017 94.647 27.049 1 33.57 ? C17 BPH 303 L 1 HETATM 63 C C18 BPH . . . F 5 8.53 94.93 27.227 1 30.97 ? C18 BPH 303 L 1 HETATM 64 C C19 BPH . . . F 5 9.087 94.832 28.653 1 33.73 ? C19 BPH 303 L 1 HETATM 65 C C20 BPH . . . F 5 8.918 96.3 26.754 1 29.87 ? C20 BPH 303 L 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 65 #