data_4HBH
#
_model_server_result.job_id            VjkAP8bkod44oooll15R0g 
_model_server_result.datetime_utc      '2024-11-24 15:29:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4hbh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":404}' 
#
_entry.id    4HBH 
#
_exptl.entry_id    4HBH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              889.215 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BACTERIOPHEOPHYTIN A' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4HBH 
_cell.length_a            139.72 
_cell.length_b            139.72 
_cell.length_c            183.98 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4HBH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 190 L HIS 190 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc2 A NE2 HIS 230 L HIS 230 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc3 B NE2 HIS 219 M HIS 219 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc4 B OE2 GLU 234 M GLU 234 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc5 B OE1 GLU 234 M GLU 234 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc6 B NE2 HIS 266 M HIS 266 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
#
_chem_comp.formula           'C55 H76 N4 O6' 
_chem_comp.formula_weight    889.215 
_chem_comp.id                BPH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BACTERIOPHEOPHYTIN A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1D CGD BPH doub 218 n n 
CGD O2D BPH sing 219 n n 
CGD CBD BPH sing 220 n n 
O2D CED BPH sing 221 n n 
CBD CHA BPH sing 222 n n 
CBD CAD BPH sing 223 n n 
CHA C4D BPH doub 224 n y 
CHA C1A BPH sing 225 n y 
C4D C3D BPH sing 226 n y 
C4D ND BPH sing 227 n y 
C3D CAD BPH sing 228 n n 
C3D C2D BPH doub 229 n y 
CAD OBD BPH doub 230 n n 
C2D CMD BPH sing 231 n n 
C2D C1D BPH sing 232 n y 
C1D ND BPH sing 233 n y 
C1D CHD BPH doub 234 n y 
CHD C4C BPH sing 235 n y 
C4C C3C BPH sing 236 n n 
C4C NC BPH doub 237 n y 
C3C CAC BPH sing 238 n n 
C3C C2C BPH sing 239 n n 
CAC CBC BPH sing 240 n n 
C2C CMC BPH sing 241 n n 
C2C C1C BPH sing 242 n n 
C1C NC BPH sing 243 n y 
C1C CHC BPH doub 244 n y 
CHC C4B BPH sing 245 n y 
C4B C3B BPH doub 246 n y 
C4B NB BPH sing 247 n y 
C3B CAB BPH sing 248 n n 
C3B C2B BPH sing 249 n y 
CAB CBB BPH sing 250 n n 
CAB OBB BPH doub 251 n n 
C2B CMB BPH sing 252 n n 
C2B C1B BPH doub 253 n y 
C1B NB BPH sing 254 n y 
C1B CHB BPH sing 255 n y 
CHB C4A BPH doub 256 n y 
C4A C3A BPH sing 257 n n 
C4A NA BPH sing 258 n y 
C3A CMA BPH sing 259 n n 
C3A C2A BPH sing 260 n n 
C2A C1A BPH sing 261 n n 
C2A CAA BPH sing 262 n n 
C1A NA BPH doub 263 n y 
CAA CBA BPH sing 264 n n 
CBA CGA BPH sing 265 n n 
CGA O1A BPH doub 266 n n 
CGA O2A BPH sing 267 n n 
O2A C1 BPH sing 268 n n 
C1 C2 BPH sing 269 n n 
C2 C3 BPH doub 270 e n 
C3 C4 BPH sing 271 n n 
C3 C5 BPH sing 272 n n 
C5 C6 BPH sing 273 n n 
C6 C7 BPH sing 274 n n 
C7 C8 BPH sing 275 n n 
C8 C9 BPH sing 276 n n 
C8 C10 BPH sing 277 n n 
C10 C11 BPH sing 278 n n 
C11 C12 BPH sing 279 n n 
C12 C13 BPH sing 280 n n 
C13 C14 BPH sing 281 n n 
C13 C15 BPH sing 282 n n 
C15 C16 BPH sing 283 n n 
C16 C17 BPH sing 284 n n 
C17 C18 BPH sing 285 n n 
C18 C19 BPH sing 286 n n 
C18 C20 BPH sing 287 n n 
CED HED1 BPH sing 288 n n 
CED HED2 BPH sing 289 n n 
CED HED3 BPH sing 290 n n 
CBD HBD BPH sing 291 n n 
CMD HMD1 BPH sing 292 n n 
CMD HMD2 BPH sing 293 n n 
CMD HMD3 BPH sing 294 n n 
ND HD BPH sing 295 n n 
CHD HHD BPH sing 296 n n 
C3C H3C BPH sing 297 n n 
CAC HAC1 BPH sing 298 n n 
CAC HAC2 BPH sing 299 n n 
CBC HBC1 BPH sing 300 n n 
CBC HBC2 BPH sing 301 n n 
CBC HBC3 BPH sing 302 n n 
C2C H2C BPH sing 303 n n 
CMC HMC1 BPH sing 304 n n 
CMC HMC2 BPH sing 305 n n 
CMC HMC3 BPH sing 306 n n 
CHC HHC BPH sing 307 n n 
CBB HBB1 BPH sing 308 n n 
CBB HBB2 BPH sing 309 n n 
CBB HBB3 BPH sing 310 n n 
CMB HMB1 BPH sing 311 n n 
CMB HMB2 BPH sing 312 n n 
CMB HMB3 BPH sing 313 n n 
NB HB BPH sing 314 n n 
CHB HHB BPH sing 315 n n 
C3A H3A BPH sing 316 n n 
CMA HMA1 BPH sing 317 n n 
CMA HMA2 BPH sing 318 n n 
CMA HMA3 BPH sing 319 n n 
C2A H2A BPH sing 320 n n 
CAA HAA1 BPH sing 321 n n 
CAA HAA2 BPH sing 322 n n 
CBA HBA1 BPH sing 323 n n 
CBA HBA2 BPH sing 324 n n 
C1 H1C1 BPH sing 325 n n 
C1 H1C2 BPH sing 326 n n 
C2 H2 BPH sing 327 n n 
C4 H4C1 BPH sing 328 n n 
C4 H4C2 BPH sing 329 n n 
C4 H4C3 BPH sing 330 n n 
C5 H5C1 BPH sing 331 n n 
C5 H5C2 BPH sing 332 n n 
C6 H6C1 BPH sing 333 n n 
C6 H6C2 BPH sing 334 n n 
C7 H7C1 BPH sing 335 n n 
C7 H7C2 BPH sing 336 n n 
C8 H8 BPH sing 337 n n 
C9 H9C1 BPH sing 338 n n 
C9 H9C2 BPH sing 339 n n 
C9 H9C3 BPH sing 340 n n 
C10 H101 BPH sing 341 n n 
C10 H102 BPH sing 342 n n 
C11 H111 BPH sing 343 n n 
C11 H112 BPH sing 344 n n 
C12 H121 BPH sing 345 n n 
C12 H122 BPH sing 346 n n 
C13 H13 BPH sing 347 n n 
C14 H141 BPH sing 348 n n 
C14 H142 BPH sing 349 n n 
C14 H143 BPH sing 350 n n 
C15 H151 BPH sing 351 n n 
C15 H152 BPH sing 352 n n 
C16 H161 BPH sing 353 n n 
C16 H162 BPH sing 354 n n 
C17 H171 BPH sing 355 n n 
C17 H172 BPH sing 356 n n 
C18 H18 BPH sing 357 n n 
C19 H191 BPH sing 358 n n 
C19 H192 BPH sing 359 n n 
C19 H193 BPH sing 360 n n 
C20 H201 BPH sing 361 n n 
C20 H202 BPH sing 362 n n 
C20 H203 BPH sing 363 n n 
#
_atom_sites.entry_id                     4HBH 
_atom_sites.fract_transf_matrix[1][1]    0.007157 
_atom_sites.fract_transf_matrix[1][2]    0.004132 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008264 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005435 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 BCL L 1 301 302 BCL BCL . 
E 4 BCL L 1 302 304 BCL BCL . 
F 5 BPH L 1 303 402 BPH BPH . 
G 6 U10 L 1 304 502 U10 U10 . 
H 6 U10 L 1 305 503 U10 U10 . 
I 4 BCL M 1 401 301 BCL BCL . 
J 7 FE M 1 402 500 FE FE . 
K 4 BCL M 1 403 801 BCL BCL . 
L 5 BPH M 1 404 401 BPH BPH . 
M 6 U10 M 1 405 501 U10 U10 . 
N 8 SPO M 1 406 600 SPO SPO . 
O 9 HOH L 1 401 7 HOH HOH . 
O 9 HOH L 2 402 15 HOH HOH . 
O 9 HOH L 3 403 16 HOH HOH . 
O 9 HOH L 4 404 24 HOH HOH . 
O 9 HOH L 5 405 27 HOH HOH . 
O 9 HOH L 6 406 29 HOH HOH . 
O 9 HOH L 7 407 44 HOH HOH . 
O 9 HOH L 8 408 45 HOH HOH . 
P 9 HOH M 1 501 3 HOH HOH . 
P 9 HOH M 2 502 4 HOH HOH . 
P 9 HOH M 3 503 12 HOH HOH . 
P 9 HOH M 4 504 13 HOH HOH . 
P 9 HOH M 5 505 14 HOH HOH . 
P 9 HOH M 6 506 21 HOH HOH . 
P 9 HOH M 7 507 40 HOH HOH . 
P 9 HOH M 8 508 41 HOH HOH . 
P 9 HOH M 9 509 47 HOH HOH . 
P 9 HOH M 10 510 50 HOH HOH . 
P 9 HOH M 11 511 53 HOH HOH . 
Q 9 HOH H 1 301 17 HOH HOH . 
Q 9 HOH H 2 302 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1D BPH . . . L 5 41.437 81.222 31.937 1 42.56 ? O1D BPH 404 M 1 
HETATM 2 C CGD BPH . . . L 5 40.431 81.718 31.49 1 40.58 ? CGD BPH 404 M 1 
HETATM 3 O O2D BPH . . . L 5 39.256 81.042 31.463 1 37.12 ? O2D BPH 404 M 1 
HETATM 4 C CED BPH . . . L 5 39.278 79.817 32.19 1 33 ? CED BPH 404 M 1 
HETATM 5 C CBD BPH . . . L 5 40.387 83.125 30.942 1 41.66 ? CBD BPH 404 M 1 
HETATM 6 C CHA BPH . . . L 5 39.364 83.942 31.698 1 43.27 ? CHA BPH 404 M 1 
HETATM 7 C C4D BPH . . . L 5 38.338 84.362 30.913 1 42.64 ? C4D BPH 404 M 1 
HETATM 8 C C3D BPH . . . L 5 38.509 83.963 29.551 1 42 ? C3D BPH 404 M 1 
HETATM 9 C CAD BPH . . . L 5 39.786 83.18 29.544 1 41.02 ? CAD BPH 404 M 1 
HETATM 10 O OBD BPH . . . L 5 40.305 82.633 28.605 1 36.29 ? OBD BPH 404 M 1 
HETATM 11 C C2D BPH . . . L 5 37.468 84.418 28.81 1 42.43 ? C2D BPH 404 M 1 
HETATM 12 C CMD BPH . . . L 5 37.145 84.258 27.36 1 41.44 ? CMD BPH 404 M 1 
HETATM 13 C C1D BPH . . . L 5 36.568 85.148 29.72 1 44.01 ? C1D BPH 404 M 1 
HETATM 14 N ND BPH . . . L 5 37.186 85.066 30.949 1 43.91 ? ND BPH 404 M 1 
HETATM 15 C CHD BPH . . . L 5 35.41 85.759 29.351 1 46.18 ? CHD BPH 404 M 1 
HETATM 16 C C4C BPH . . . L 5 34.517 86.487 30.291 1 45.95 ? C4C BPH 404 M 1 
HETATM 17 C C3C BPH . . . L 5 33.144 87.058 29.89 1 46.86 ? C3C BPH 404 M 1 
HETATM 18 C CAC BPH . . . L 5 33.13 88.139 28.83 1 47.41 ? CAC BPH 404 M 1 
HETATM 19 C CBC BPH . . . L 5 33.328 87.555 27.455 1 52.21 ? CBC BPH 404 M 1 
HETATM 20 C C2C BPH . . . L 5 32.748 87.79 31.181 1 46.99 ? C2C BPH 404 M 1 
HETATM 21 C CMC BPH . . . L 5 31.327 87.411 31.605 1 43.22 ? CMC BPH 404 M 1 
HETATM 22 C C1C BPH . . . L 5 33.827 87.33 32.159 1 46.81 ? C1C BPH 404 M 1 
HETATM 23 N NC BPH . . . L 5 34.828 86.614 31.536 1 45.73 ? NC BPH 404 M 1 
HETATM 24 C CHC BPH . . . L 5 33.805 87.625 33.459 1 46.9 ? CHC BPH 404 M 1 
HETATM 25 C C4B BPH . . . L 5 34.725 87.194 34.48 1 50.44 ? C4B BPH 404 M 1 
HETATM 26 C C3B BPH . . . L 5 34.541 87.403 35.833 1 51.54 ? C3B BPH 404 M 1 
HETATM 27 C CAB BPH . . . L 5 33.43 88.169 36.367 1 50.39 ? CAB BPH 404 M 1 
HETATM 28 C CBB BPH . . . L 5 32.04 87.925 35.871 1 48.34 ? CBB BPH 404 M 1 
HETATM 29 O OBB BPH . . . L 5 33.544 89.036 37.232 1 51.57 ? OBB BPH 404 M 1 
HETATM 30 C C2B BPH . . . L 5 35.604 86.773 36.539 1 49.54 ? C2B BPH 404 M 1 
HETATM 31 C CMB BPH . . . L 5 35.779 86.808 37.992 1 48.38 ? CMB BPH 404 M 1 
HETATM 32 C C1B BPH . . . L 5 36.458 86.194 35.636 1 48.35 ? C1B BPH 404 M 1 
HETATM 33 N NB BPH . . . L 5 35.892 86.409 34.372 1 48.65 ? NB BPH 404 M 1 
HETATM 34 C CHB BPH . . . L 5 37.621 85.412 35.913 1 47.32 ? CHB BPH 404 M 1 
HETATM 35 C C4A BPH . . . L 5 38.435 84.766 35.037 1 45.55 ? C4A BPH 404 M 1 
HETATM 36 C C3A BPH . . . L 5 39.59 83.881 35.442 1 41.97 ? C3A BPH 404 M 1 
HETATM 37 C CMA BPH . . . L 5 38.973 82.535 35.797 1 36.65 ? CMA BPH 404 M 1 
HETATM 38 C C2A BPH . . . L 5 40.44 83.772 34.166 1 41.95 ? C2A BPH 404 M 1 
HETATM 39 C C1A BPH . . . L 5 39.37 84.215 33.149 1 43.89 ? C1A BPH 404 M 1 
HETATM 40 N NA BPH . . . L 5 38.332 84.805 33.664 1 45.36 ? NA BPH 404 M 1 
HETATM 41 C CAA BPH . . . L 5 41.69 84.648 34.237 1 42.73 ? CAA BPH 404 M 1 
HETATM 42 C CBA BPH . . . L 5 42.87 84.153 35.099 1 45.36 ? CBA BPH 404 M 1 
HETATM 43 C CGA BPH . . . L 5 43.875 85.253 35.486 1 50.76 ? CGA BPH 404 M 1 
HETATM 44 O O1A BPH . . . L 5 44.062 86.289 34.812 1 50.25 ? O1A BPH 404 M 1 
HETATM 45 O O2A BPH . . . L 5 44.453 84.911 36.723 1 54.12 ? O2A BPH 404 M 1 
HETATM 46 C C1 BPH . . . L 5 45.827 85.074 37.234 1 54.62 ? C1 BPH 404 M 1 
HETATM 47 C C2 BPH . . . L 5 46.065 84.047 38.355 1 56.42 ? C2 BPH 404 M 1 
HETATM 48 C C3 BPH . . . L 5 45.592 84.175 39.637 1 58.53 ? C3 BPH 404 M 1 
HETATM 49 C C4 BPH . . . L 5 44.805 85.412 39.99 1 59.09 ? C4 BPH 404 M 1 
HETATM 50 C C5 BPH . . . L 5 45.679 83.251 40.879 1 59.5 ? C5 BPH 404 M 1 
HETATM 51 C C6 BPH . . . L 5 45.31 83.799 42.319 1 62.33 ? C6 BPH 404 M 1 
HETATM 52 C C7 BPH . . . L 5 43.944 83.498 43.039 1 64.71 ? C7 BPH 404 M 1 
HETATM 53 C C8 BPH . . . L 5 43.903 82.496 44.253 1 63.09 ? C8 BPH 404 M 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           348 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           53 
#