data_4HBH # _model_server_result.job_id C03zCCQ1KUe60CpJhx9pRg _model_server_result.datetime_utc '2024-11-24 15:53:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hbh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":406}' # _entry.id 4HBH # _exptl.entry_id 4HBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 568.914 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPHEROIDENE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4HBH _cell.length_a 139.72 _cell.length_b 139.72 _cell.length_c 183.98 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 190 L HIS 190 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc2 A NE2 HIS 230 L HIS 230 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc3 B NE2 HIS 219 M HIS 219 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc4 B OE2 GLU 234 M GLU 234 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc5 B OE1 GLU 234 M GLU 234 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc6 B NE2 HIS 266 M HIS 266 1_555 J FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? # _chem_comp.formula 'C41 H60 O' _chem_comp.formula_weight 568.914 _chem_comp.id SPO _chem_comp.mon_nstd_flag . _chem_comp.name SPHEROIDENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CM1 O1 SPO sing 584 n n CM1 HM11 SPO sing 585 n n CM1 HM12 SPO sing 586 n n CM1 HM13 SPO sing 587 n n O1 C1 SPO sing 588 n n C1 C2 SPO sing 589 n n C1 C3 SPO sing 590 n n C1 C4 SPO sing 591 n n C2 H21A SPO sing 592 n n C2 H22A SPO sing 593 n n C2 H23 SPO sing 594 n n C3 H31 SPO sing 595 n n C3 H32A SPO sing 596 n n C3 H33 SPO sing 597 n n C4 C5 SPO sing 598 n n C4 H41 SPO sing 599 n n C4 H42 SPO sing 600 n n C5 C6 SPO doub 601 e n C5 H5 SPO sing 602 n n C6 C7 SPO sing 603 n n C6 H6 SPO sing 604 n n C7 C8 SPO sing 605 n n C7 C9 SPO doub 606 e n C8 H81 SPO sing 607 n n C8 H82 SPO sing 608 n n C8 H83 SPO sing 609 n n C9 C10 SPO sing 610 n n C9 H9 SPO sing 611 n n C10 C11 SPO doub 612 e n C10 H10 SPO sing 613 n n C11 C12 SPO sing 614 n n C11 H11 SPO sing 615 n n C12 C13 SPO sing 616 n n C12 C14 SPO doub 617 e n C13 H131 SPO sing 618 n n C13 H132 SPO sing 619 n n C13 H133 SPO sing 620 n n C14 C15 SPO sing 621 n n C14 H14 SPO sing 622 n n C15 C16 SPO doub 623 e n C15 H15 SPO sing 624 n n C16 C17 SPO sing 625 n n C16 H16 SPO sing 626 n n C17 C18 SPO sing 627 n n C17 C19 SPO doub 628 z n C18 H181 SPO sing 629 n n C18 H182 SPO sing 630 n n C18 H183 SPO sing 631 n n C19 C20 SPO sing 632 n n C19 H19 SPO sing 633 n n C20 C21 SPO doub 634 e n C20 H20 SPO sing 635 n n C21 C22 SPO sing 636 n n C21 H21 SPO sing 637 n n C22 C23 SPO doub 638 e n C22 H22 SPO sing 639 n n C23 C24 SPO sing 640 n n C23 C25 SPO sing 641 n n C24 H241 SPO sing 642 n n C24 H242 SPO sing 643 n n C24 H243 SPO sing 644 n n C25 C26 SPO doub 645 e n C25 H25 SPO sing 646 n n C26 C27 SPO sing 647 n n C26 H26 SPO sing 648 n n C27 C28 SPO doub 649 e n C27 H27 SPO sing 650 n n C28 C29 SPO sing 651 n n C28 C30 SPO sing 652 n n C29 H291 SPO sing 653 n n C29 H292 SPO sing 654 n n C29 H293 SPO sing 655 n n C30 C31 SPO sing 656 n n C30 H301 SPO sing 657 n n C30 H302 SPO sing 658 n n C31 C32 SPO sing 659 n n C31 H311 SPO sing 660 n n C31 H312 SPO sing 661 n n C32 C33 SPO doub 662 e n C32 H32 SPO sing 663 n n C33 C34 SPO sing 664 n n C33 C35 SPO sing 665 n n C34 H341 SPO sing 666 n n C34 H342 SPO sing 667 n n C34 H343 SPO sing 668 n n C35 C36 SPO sing 669 n n C35 H351 SPO sing 670 n n C35 H352 SPO sing 671 n n C36 C37 SPO sing 672 n n C36 H361 SPO sing 673 n n C36 H362 SPO sing 674 n n C37 C38 SPO doub 675 n n C37 H37 SPO sing 676 n n C38 C39 SPO sing 677 n n C38 C40 SPO sing 678 n n C39 H391 SPO sing 679 n n C39 H392 SPO sing 680 n n C39 H393 SPO sing 681 n n C40 H401 SPO sing 682 n n C40 H402 SPO sing 683 n n C40 H403 SPO sing 684 n n # _atom_sites.entry_id 4HBH _atom_sites.fract_transf_matrix[1][1] 0.007157 _atom_sites.fract_transf_matrix[1][2] 0.004132 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 301 302 BCL BCL . E 4 BCL L 1 302 304 BCL BCL . F 5 BPH L 1 303 402 BPH BPH . G 6 U10 L 1 304 502 U10 U10 . H 6 U10 L 1 305 503 U10 U10 . I 4 BCL M 1 401 301 BCL BCL . J 7 FE M 1 402 500 FE FE . K 4 BCL M 1 403 801 BCL BCL . L 5 BPH M 1 404 401 BPH BPH . M 6 U10 M 1 405 501 U10 U10 . N 8 SPO M 1 406 600 SPO SPO . O 9 HOH L 1 401 7 HOH HOH . O 9 HOH L 2 402 15 HOH HOH . O 9 HOH L 3 403 16 HOH HOH . O 9 HOH L 4 404 24 HOH HOH . O 9 HOH L 5 405 27 HOH HOH . O 9 HOH L 6 406 29 HOH HOH . O 9 HOH L 7 407 44 HOH HOH . O 9 HOH L 8 408 45 HOH HOH . P 9 HOH M 1 501 3 HOH HOH . P 9 HOH M 2 502 4 HOH HOH . P 9 HOH M 3 503 12 HOH HOH . P 9 HOH M 4 504 13 HOH HOH . P 9 HOH M 5 505 14 HOH HOH . P 9 HOH M 6 506 21 HOH HOH . P 9 HOH M 7 507 40 HOH HOH . P 9 HOH M 8 508 41 HOH HOH . P 9 HOH M 9 509 47 HOH HOH . P 9 HOH M 10 510 50 HOH HOH . P 9 HOH M 11 511 53 HOH HOH . Q 9 HOH H 1 301 17 HOH HOH . Q 9 HOH H 2 302 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CM1 SPO . . . N 8 43.586 83.123 55.018 1 85.73 ? CM1 SPO 406 M 1 HETATM 2 O O1 SPO . . . N 8 43.867 84.386 54.381 1 87.33 ? O1 SPO 406 M 1 HETATM 3 C C1 SPO . . . N 8 44.894 84.61 53.372 1 86.66 ? C1 SPO 406 M 1 HETATM 4 C C2 SPO . . . N 8 46.226 84.952 54.057 1 85.59 ? C2 SPO 406 M 1 HETATM 5 C C3 SPO . . . N 8 45.061 83.387 52.447 1 86.4 ? C3 SPO 406 M 1 HETATM 6 C C4 SPO . . . N 8 44.542 85.831 52.507 1 85.09 ? C4 SPO 406 M 1 HETATM 7 C C5 SPO . . . N 8 43.065 86.029 52.189 1 82.88 ? C5 SPO 406 M 1 HETATM 8 C C6 SPO . . . N 8 42.752 87.052 51.382 1 80.7 ? C6 SPO 406 M 1 HETATM 9 C C7 SPO . . . N 8 41.387 87.424 50.932 1 79.62 ? C7 SPO 406 M 1 HETATM 10 C C8 SPO . . . N 8 40.165 86.948 51.689 1 81.13 ? C8 SPO 406 M 1 HETATM 11 C C9 SPO . . . N 8 41.283 88.181 49.807 1 76.34 ? C9 SPO 406 M 1 HETATM 12 C C10 SPO . . . N 8 40.043 88.674 49.177 1 71.87 ? C10 SPO 406 M 1 HETATM 13 C C11 SPO . . . N 8 40.15 89.448 48.087 1 68.57 ? C11 SPO 406 M 1 HETATM 14 C C12 SPO . . . N 8 38.984 90.048 47.392 1 67.22 ? C12 SPO 406 M 1 HETATM 15 C C13 SPO . . . N 8 37.692 90.248 48.139 1 65.71 ? C13 SPO 406 M 1 HETATM 16 C C14 SPO . . . N 8 39.099 90.462 46.108 1 66.78 ? C14 SPO 406 M 1 HETATM 17 C C15 SPO . . . N 8 37.996 91.078 45.342 1 64.99 ? C15 SPO 406 M 1 HETATM 18 C C16 SPO . . . N 8 38.153 92.027 44.388 1 62.16 ? C16 SPO 406 M 1 HETATM 19 C C17 SPO . . . N 8 36.904 92.506 43.747 1 59.62 ? C17 SPO 406 M 1 HETATM 20 C C18 SPO . . . N 8 35.64 92.093 44.437 1 59.2 ? C18 SPO 406 M 1 HETATM 21 C C19 SPO . . . N 8 36.79 93.224 42.602 1 56.78 ? C19 SPO 406 M 1 HETATM 22 C C20 SPO . . . N 8 37.905 93.743 41.849 1 55.18 ? C20 SPO 406 M 1 HETATM 23 C C21 SPO . . . N 8 37.806 94.559 40.801 1 54.99 ? C21 SPO 406 M 1 HETATM 24 C C22 SPO . . . N 8 39.118 94.999 40.315 1 55.08 ? C22 SPO 406 M 1 HETATM 25 C C23 SPO . . . N 8 39.418 95.744 39.245 1 57.82 ? C23 SPO 406 M 1 HETATM 26 C C24 SPO . . . N 8 38.31 96.211 38.343 1 55.9 ? C24 SPO 406 M 1 HETATM 27 C C25 SPO . . . N 8 40.885 96.059 39.038 1 63.37 ? C25 SPO 406 M 1 HETATM 28 C C26 SPO . . . N 8 41.603 96.411 37.925 1 66.74 ? C26 SPO 406 M 1 HETATM 29 C C27 SPO . . . N 8 43.074 96.675 38.043 1 68.38 ? C27 SPO 406 M 1 HETATM 30 C C28 SPO . . . N 8 43.973 97.046 37.067 1 68.82 ? C28 SPO 406 M 1 HETATM 31 C C29 SPO . . . N 8 43.531 97.208 35.627 1 66.74 ? C29 SPO 406 M 1 HETATM 32 C C30 SPO . . . N 8 45.452 97.265 37.459 1 69.54 ? C30 SPO 406 M 1 HETATM 33 C C31 SPO . . . N 8 46.085 98.658 37.211 1 70.24 ? C31 SPO 406 M 1 HETATM 34 C C32 SPO . . . N 8 47.115 98.976 38.301 1 72.76 ? C32 SPO 406 M 1 HETATM 35 C C33 SPO . . . N 8 48.069 99.94 38.226 1 73.66 ? C33 SPO 406 M 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 27 _model_server_stats.element_count 35 #