data_4HBJ
#
_model_server_result.job_id            g_p8Vq3wPYMFgz9bhFRLRw 
_model_server_result.datetime_utc      '2024-11-27 18:59:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4hbj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":406}' 
#
_entry.id    4HBJ 
#
_exptl.entry_id    4HBJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              568.914 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SPHEROIDENE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4HBJ 
_cell.length_a            139.54 
_cell.length_b            139.54 
_cell.length_c            185.07 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4HBJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 190 L HIS 190 1_555 I FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc2 A NE2 HIS 230 L HIS 230 1_555 I FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc3 B NE2 HIS 219 M HIS 219 1_555 I FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc4 B OE2 GLU 234 M GLU 234 1_555 I FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc5 B OE1 GLU 234 M GLU 234 1_555 I FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc6 B NE2 HIS 266 M HIS 266 1_555 I FE FE . M FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
#
_chem_comp.formula           'C41 H60 O' 
_chem_comp.formula_weight    568.914 
_chem_comp.id                SPO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SPHEROIDENE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CM1 O1 SPO sing 584 n n 
CM1 HM11 SPO sing 585 n n 
CM1 HM12 SPO sing 586 n n 
CM1 HM13 SPO sing 587 n n 
O1 C1 SPO sing 588 n n 
C1 C2 SPO sing 589 n n 
C1 C3 SPO sing 590 n n 
C1 C4 SPO sing 591 n n 
C2 H21A SPO sing 592 n n 
C2 H22A SPO sing 593 n n 
C2 H23 SPO sing 594 n n 
C3 H31 SPO sing 595 n n 
C3 H32A SPO sing 596 n n 
C3 H33 SPO sing 597 n n 
C4 C5 SPO sing 598 n n 
C4 H41 SPO sing 599 n n 
C4 H42 SPO sing 600 n n 
C5 C6 SPO doub 601 e n 
C5 H5 SPO sing 602 n n 
C6 C7 SPO sing 603 n n 
C6 H6 SPO sing 604 n n 
C7 C8 SPO sing 605 n n 
C7 C9 SPO doub 606 e n 
C8 H81 SPO sing 607 n n 
C8 H82 SPO sing 608 n n 
C8 H83 SPO sing 609 n n 
C9 C10 SPO sing 610 n n 
C9 H9 SPO sing 611 n n 
C10 C11 SPO doub 612 e n 
C10 H10 SPO sing 613 n n 
C11 C12 SPO sing 614 n n 
C11 H11 SPO sing 615 n n 
C12 C13 SPO sing 616 n n 
C12 C14 SPO doub 617 e n 
C13 H131 SPO sing 618 n n 
C13 H132 SPO sing 619 n n 
C13 H133 SPO sing 620 n n 
C14 C15 SPO sing 621 n n 
C14 H14 SPO sing 622 n n 
C15 C16 SPO doub 623 e n 
C15 H15 SPO sing 624 n n 
C16 C17 SPO sing 625 n n 
C16 H16 SPO sing 626 n n 
C17 C18 SPO sing 627 n n 
C17 C19 SPO doub 628 z n 
C18 H181 SPO sing 629 n n 
C18 H182 SPO sing 630 n n 
C18 H183 SPO sing 631 n n 
C19 C20 SPO sing 632 n n 
C19 H19 SPO sing 633 n n 
C20 C21 SPO doub 634 e n 
C20 H20 SPO sing 635 n n 
C21 C22 SPO sing 636 n n 
C21 H21 SPO sing 637 n n 
C22 C23 SPO doub 638 e n 
C22 H22 SPO sing 639 n n 
C23 C24 SPO sing 640 n n 
C23 C25 SPO sing 641 n n 
C24 H241 SPO sing 642 n n 
C24 H242 SPO sing 643 n n 
C24 H243 SPO sing 644 n n 
C25 C26 SPO doub 645 e n 
C25 H25 SPO sing 646 n n 
C26 C27 SPO sing 647 n n 
C26 H26 SPO sing 648 n n 
C27 C28 SPO doub 649 e n 
C27 H27 SPO sing 650 n n 
C28 C29 SPO sing 651 n n 
C28 C30 SPO sing 652 n n 
C29 H291 SPO sing 653 n n 
C29 H292 SPO sing 654 n n 
C29 H293 SPO sing 655 n n 
C30 C31 SPO sing 656 n n 
C30 H301 SPO sing 657 n n 
C30 H302 SPO sing 658 n n 
C31 C32 SPO sing 659 n n 
C31 H311 SPO sing 660 n n 
C31 H312 SPO sing 661 n n 
C32 C33 SPO doub 662 e n 
C32 H32 SPO sing 663 n n 
C33 C34 SPO sing 664 n n 
C33 C35 SPO sing 665 n n 
C34 H341 SPO sing 666 n n 
C34 H342 SPO sing 667 n n 
C34 H343 SPO sing 668 n n 
C35 C36 SPO sing 669 n n 
C35 H351 SPO sing 670 n n 
C35 H352 SPO sing 671 n n 
C36 C37 SPO sing 672 n n 
C36 H361 SPO sing 673 n n 
C36 H362 SPO sing 674 n n 
C37 C38 SPO doub 675 n n 
C37 H37 SPO sing 676 n n 
C38 C39 SPO sing 677 n n 
C38 C40 SPO sing 678 n n 
C39 H391 SPO sing 679 n n 
C39 H392 SPO sing 680 n n 
C39 H393 SPO sing 681 n n 
C40 H401 SPO sing 682 n n 
C40 H402 SPO sing 683 n n 
C40 H403 SPO sing 684 n n 
#
_atom_sites.entry_id                     4HBJ 
_atom_sites.fract_transf_matrix[1][1]    0.007166 
_atom_sites.fract_transf_matrix[1][2]    0.004138 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008275 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005403 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 BCL L 1 301 302 BCL BCL . 
E 4 BCL L 1 302 304 BCL BCL . 
F 5 BPH L 1 303 402 BPH BPH . 
G 6 U10 L 1 304 502 U10 U10 . 
H 4 BCL M 1 401 301 BCL BCL . 
I 7 FE M 1 402 500 FE FE . 
J 4 BCL M 1 403 801 BCL BCL . 
K 5 BPH M 1 404 401 BPH BPH . 
L 6 U10 M 1 405 501 U10 U10 . 
M 8 SPO M 1 406 600 SPO SPO . 
N 9 HOH L 1 401 2 HOH HOH . 
N 9 HOH L 2 402 11 HOH HOH . 
N 9 HOH L 3 403 12 HOH HOH . 
N 9 HOH L 4 404 20 HOH HOH . 
N 9 HOH L 5 405 21 HOH HOH . 
N 9 HOH L 6 406 31 HOH HOH . 
N 9 HOH L 7 407 33 HOH HOH . 
N 9 HOH L 8 408 34 HOH HOH . 
N 9 HOH L 9 409 46 HOH HOH . 
N 9 HOH L 10 410 49 HOH HOH . 
N 9 HOH L 11 411 52 HOH HOH . 
N 9 HOH L 12 412 57 HOH HOH . 
N 9 HOH L 13 413 59 HOH HOH . 
N 9 HOH L 14 414 61 HOH HOH . 
N 9 HOH L 15 415 73 HOH HOH . 
N 9 HOH L 16 416 100 HOH HOH . 
N 9 HOH L 17 417 140 HOH HOH . 
N 9 HOH L 18 418 154 HOH HOH . 
O 9 HOH M 1 501 4 HOH HOH . 
O 9 HOH M 2 502 10 HOH HOH . 
O 9 HOH M 3 503 18 HOH HOH . 
O 9 HOH M 4 504 23 HOH HOH . 
O 9 HOH M 5 505 32 HOH HOH . 
O 9 HOH M 6 506 40 HOH HOH . 
O 9 HOH M 7 507 43 HOH HOH . 
O 9 HOH M 8 508 54 HOH HOH . 
O 9 HOH M 9 509 60 HOH HOH . 
O 9 HOH M 10 510 62 HOH HOH . 
O 9 HOH M 11 511 65 HOH HOH . 
O 9 HOH M 12 512 71 HOH HOH . 
O 9 HOH M 13 513 81 HOH HOH . 
O 9 HOH M 14 514 98 HOH HOH . 
O 9 HOH M 15 515 106 HOH HOH . 
O 9 HOH M 16 516 143 HOH HOH . 
O 9 HOH M 17 517 144 HOH HOH . 
O 9 HOH M 18 518 148 HOH HOH . 
O 9 HOH M 19 519 176 HOH HOH . 
P 9 HOH H 1 301 5 HOH HOH . 
P 9 HOH H 2 302 7 HOH HOH . 
P 9 HOH H 3 303 9 HOH HOH . 
P 9 HOH H 4 304 15 HOH HOH . 
P 9 HOH H 5 305 16 HOH HOH . 
P 9 HOH H 6 306 38 HOH HOH . 
P 9 HOH H 7 307 39 HOH HOH . 
P 9 HOH H 8 308 42 HOH HOH . 
P 9 HOH H 9 309 44 HOH HOH . 
P 9 HOH H 10 310 45 HOH HOH . 
P 9 HOH H 11 311 56 HOH HOH . 
P 9 HOH H 12 312 66 HOH HOH . 
P 9 HOH H 13 313 72 HOH HOH . 
P 9 HOH H 14 314 82 HOH HOH . 
P 9 HOH H 15 315 84 HOH HOH . 
P 9 HOH H 16 316 90 HOH HOH . 
P 9 HOH H 17 317 92 HOH HOH . 
P 9 HOH H 18 318 101 HOH HOH . 
P 9 HOH H 19 319 107 HOH HOH . 
P 9 HOH H 20 320 108 HOH HOH . 
P 9 HOH H 21 321 109 HOH HOH . 
P 9 HOH H 22 322 113 HOH HOH . 
P 9 HOH H 23 323 123 HOH HOH . 
P 9 HOH H 24 324 145 HOH HOH . 
P 9 HOH H 25 325 147 HOH HOH . 
P 9 HOH H 26 326 159 HOH HOH . 
P 9 HOH H 27 327 164 HOH HOH . 
P 9 HOH H 28 328 174 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CM1 SPO . . . M 8 42.74 83.114 55.215 1 79.21 ? CM1 SPO 406 M 1 
HETATM 2 O O1 SPO . . . M 8 43.548 84.296 54.997 1 81.16 ? O1 SPO 406 M 1 
HETATM 3 C C1 SPO . . . M 8 44.693 84.437 54.092 1 81.08 ? C1 SPO 406 M 1 
HETATM 4 C C2 SPO . . . M 8 45.842 85.199 54.777 1 79.84 ? C2 SPO 406 M 1 
HETATM 5 C C3 SPO . . . M 8 45.243 83.077 53.635 1 81.4 ? C3 SPO 406 M 1 
HETATM 6 C C4 SPO . . . M 8 44.36 85.25 52.826 1 78.95 ? C4 SPO 406 M 1 
HETATM 7 C C5 SPO . . . M 8 42.915 85.651 52.621 1 76.63 ? C5 SPO 406 M 1 
HETATM 8 C C6 SPO . . . M 8 42.661 86.572 51.678 1 75.9 ? C6 SPO 406 M 1 
HETATM 9 C C7 SPO . . . M 8 41.297 87.071 51.326 1 73.97 ? C7 SPO 406 M 1 
HETATM 10 C C8 SPO . . . M 8 40.14 86.731 52.221 1 73.85 ? C8 SPO 406 M 1 
HETATM 11 C C9 SPO . . . M 8 41.144 87.793 50.182 1 70.73 ? C9 SPO 406 M 1 
HETATM 12 C C10 SPO . . . M 8 39.904 88.38 49.624 1 67.61 ? C10 SPO 406 M 1 
HETATM 13 C C11 SPO . . . M 8 39.965 89.131 48.496 1 64.42 ? C11 SPO 406 M 1 
HETATM 14 C C12 SPO . . . M 8 38.803 89.803 47.847 1 61.38 ? C12 SPO 406 M 1 
HETATM 15 C C13 SPO . . . M 8 37.485 89.83 48.587 1 61.33 ? C13 SPO 406 M 1 
HETATM 16 C C14 SPO . . . M 8 38.946 90.407 46.639 1 56.8 ? C14 SPO 406 M 1 
HETATM 17 C C15 SPO . . . M 8 37.835 91.072 45.926 1 52.91 ? C15 SPO 406 M 1 
HETATM 18 C C16 SPO . . . M 8 37.967 91.589 44.674 1 50.87 ? C16 SPO 406 M 1 
HETATM 19 C C17 SPO . . . M 8 36.786 92.218 44.026 1 47.71 ? C17 SPO 406 M 1 
HETATM 20 C C18 SPO . . . M 8 35.47 91.885 44.614 1 48.62 ? C18 SPO 406 M 1 
HETATM 21 C C19 SPO . . . M 8 36.714 93.024 42.948 1 46.43 ? C19 SPO 406 M 1 
HETATM 22 C C20 SPO . . . M 8 37.806 93.584 42.189 1 45.88 ? C20 SPO 406 M 1 
HETATM 23 C C21 SPO . . . M 8 37.657 94.495 41.223 1 45.81 ? C21 SPO 406 M 1 
HETATM 24 C C22 SPO . . . M 8 38.954 94.942 40.712 1 47.11 ? C22 SPO 406 M 1 
HETATM 25 C C23 SPO . . . M 8 39.265 95.708 39.655 1 49.04 ? C23 SPO 406 M 1 
HETATM 26 C C24 SPO . . . M 8 38.142 96.175 38.782 1 47.31 ? C24 SPO 406 M 1 
HETATM 27 C C25 SPO . . . M 8 40.743 95.997 39.422 1 51.89 ? C25 SPO 406 M 1 
HETATM 28 C C26 SPO . . . M 8 41.436 96.229 38.276 1 55.35 ? C26 SPO 406 M 1 
HETATM 29 C C27 SPO . . . M 8 42.906 96.481 38.304 1 60.94 ? C27 SPO 406 M 1 
HETATM 30 C C28 SPO . . . M 8 43.654 96.935 37.246 1 64.96 ? C28 SPO 406 M 1 
HETATM 31 C C29 SPO . . . M 8 43.001 97.183 35.91 1 64.6 ? C29 SPO 406 M 1 
HETATM 32 C C30 SPO . . . M 8 45.17 97.173 37.342 1 68.88 ? C30 SPO 406 M 1 
HETATM 33 C C31 SPO . . . M 8 45.533 98.58 37.81 1 73.78 ? C31 SPO 406 M 1 
HETATM 34 C C32 SPO . . . M 8 46.988 99.038 37.681 1 79.25 ? C32 SPO 406 M 1 
HETATM 35 C C33 SPO . . . M 8 47.586 99.902 38.567 1 83.13 ? C33 SPO 406 M 1 
HETATM 36 C C34 SPO . . . M 8 46.781 100.428 39.712 1 81.82 ? C34 SPO 406 M 1 
HETATM 37 C C35 SPO . . . M 8 49.019 100.456 38.468 1 87.08 ? C35 SPO 406 M 1 
HETATM 38 C C36 SPO . . . M 8 50.245 99.533 38.457 1 93.3 ? C36 SPO 406 M 1 
HETATM 39 C C37 SPO . . . M 8 50.776 99.221 37.035 1 98.27 ? C37 SPO 406 M 1 
HETATM 40 C C38 SPO . . . M 8 51.914 99.689 36.405 1 100.08 ? C38 SPO 406 M 1 
HETATM 41 C C39 SPO . . . M 8 52.245 99.219 34.993 1 98.68 ? C39 SPO 406 M 1 
HETATM 42 C C40 SPO . . . M 8 52.847 100.676 37.08 1 99.08 ? C40 SPO 406 M 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           42 
#