data_4HBS # _model_server_result.job_id BRbwTSxm_doqNZkd64TdLg _model_server_result.datetime_utc '2024-10-19 04:44:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hbs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4HBS # _exptl.entry_id 4HBS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4HBS _cell.length_a 104.4 _cell.length_b 104.4 _cell.length_c 116.131 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 14 A LYS 32 1_555 A N MSE 15 A MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale2 A C MSE 15 A MSE 33 1_555 A N PRO 16 A PRO 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale3 A C LEU 26 A LEU 44 1_555 A N MSE 27 A MSE 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale4 A C MSE 27 A MSE 45 1_555 A N PRO 28 A PRO 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale5 A C ILE 99 A ILE 117 1_555 A N MSE 100 A MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale6 A C MSE 100 A MSE 118 1_555 A N VAL 101 A VAL 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale7 A C GLN 169 A GLN 187 1_555 A N MSE 170 A MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale8 A C MSE 170 A MSE 188 1_555 A N GLN 171 A GLN 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale9 A C GLN 171 A GLN 189 1_555 A N MSE 172 A MSE 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale10 A C MSE 172 A MSE 190 1_555 A N LEU 173 A LEU 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale11 A C LEU 185 A LEU 203 1_555 A N MSE 186 A MSE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale12 A C MSE 186 A MSE 204 1_555 A N ARG 187 A ARG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale13 A C TYR 207 A TYR 225 1_555 A N MSE 208 A MSE 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale14 A C MSE 208 A MSE 226 1_555 A N LYS 209 A LYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale15 A C THR 227 A THR 245 1_555 A N MSE 228 A MSE 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale16 A C MSE 228 A MSE 246 1_555 A N TRP 229 A TRP 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale17 A C SER 296 A SER 314 1_555 A N MSE 297 A MSE 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale18 A C MSE 297 A MSE 315 1_555 A N PRO 298 A PRO 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale19 A C TYR 308 A TYR 326 1_555 A N MSE 309 A MSE 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 A C MSE 309 A MSE 327 1_555 A N ILE 310 A ILE 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale21 A C SER 313 A SER 331 1_555 A N MSE 314 A MSE 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 A C MSE 314 A MSE 332 1_555 A N TRP 315 A TRP 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale23 A C LEU 321 A LEU 339 1_555 A N MSE 322 A MSE 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale24 A C MSE 322 A MSE 340 1_555 A N PHE 323 A PHE 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale25 A C TYR 357 A TYR 375 1_555 A N MSE 358 A MSE 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale26 A C MSE 358 A MSE 376 1_555 A N VAL 359 A VAL 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 4HBS _atom_sites.fract_transf_matrix[1][1] 0.009579 _atom_sites.fract_transf_matrix[1][2] 0.00553 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 500 500 GOL GOL . C 2 GOL A 1 501 501 GOL GOL . D 2 GOL A 1 502 502 GOL GOL . E 2 GOL A 1 503 503 GOL GOL . F 3 HOH A 1 601 504 HOH HOH . F 3 HOH A 2 602 505 HOH HOH . F 3 HOH A 3 603 506 HOH HOH . F 3 HOH A 4 604 507 HOH HOH . F 3 HOH A 5 605 508 HOH HOH . F 3 HOH A 6 606 509 HOH HOH . F 3 HOH A 7 607 510 HOH HOH . F 3 HOH A 8 608 511 HOH HOH . F 3 HOH A 9 609 512 HOH HOH . F 3 HOH A 10 610 513 HOH HOH . F 3 HOH A 11 611 514 HOH HOH . F 3 HOH A 12 612 515 HOH HOH . F 3 HOH A 13 613 516 HOH HOH . F 3 HOH A 14 614 517 HOH HOH . F 3 HOH A 15 615 518 HOH HOH . F 3 HOH A 16 616 519 HOH HOH . F 3 HOH A 17 617 520 HOH HOH . F 3 HOH A 18 618 521 HOH HOH . F 3 HOH A 19 619 522 HOH HOH . F 3 HOH A 20 620 523 HOH HOH . F 3 HOH A 21 621 524 HOH HOH . F 3 HOH A 22 622 525 HOH HOH . F 3 HOH A 23 623 526 HOH HOH . F 3 HOH A 24 624 527 HOH HOH . F 3 HOH A 25 625 528 HOH HOH . F 3 HOH A 26 626 529 HOH HOH . F 3 HOH A 27 627 530 HOH HOH . F 3 HOH A 28 628 531 HOH HOH . F 3 HOH A 29 629 532 HOH HOH . F 3 HOH A 30 630 533 HOH HOH . F 3 HOH A 31 631 534 HOH HOH . F 3 HOH A 32 632 535 HOH HOH . F 3 HOH A 33 633 536 HOH HOH . F 3 HOH A 34 634 537 HOH HOH . F 3 HOH A 35 635 538 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 58.025 28.231 23.386 1 55.28 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . C 2 58.477 26.972 22.911 1 53.47 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . C 2 58.774 29.378 22.749 1 55.74 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . C 2 59.012 29.077 21.369 1 53.99 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . C 2 57.88 30.593 22.883 1 58.4 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . C 2 58.038 31.514 21.805 1 60.15 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #