data_4HC1 # _model_server_result.job_id kgZTkefBsiZxlk2904IC7Q _model_server_result.datetime_utc '2025-02-17 07:09:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hc1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2061}' # _entry.id 4HC1 # _exptl.entry_id 4HC1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.29 _cell.angle_gamma 90 _cell.entry_id 4HC1 _cell.length_a 317.854 _cell.length_b 71.727 _cell.length_c 70.557 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HC1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,I,J,K 1 1 D,E,F,H,L,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 A CYS 25 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 29 A CYS 29 1_555 A SG CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 112 A CYS 112 1_555 A SG CYS 178 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 B SG CYS 145 H CYS 145 1_555 B SG CYS 200 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 C SG CYS 134 L CYS 134 1_555 C SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 D SG CYS 25 B CYS 25 1_555 D SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 D SG CYS 29 B CYS 29 1_555 D SG CYS 76 B CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 D SG CYS 112 B CYS 112 1_555 D SG CYS 178 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 E SG CYS 22 M CYS 22 1_555 E SG CYS 96 M CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf12 E SG CYS 145 M CYS 145 1_555 E SG CYS 200 M CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 F SG CYS 23 N CYS 23 1_555 F SG CYS 88 N CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf14 F SG CYS 134 N CYS 134 1_555 F SG CYS 194 N CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 61 A ASN 61 1_555 G C1 NAG . A NAG 2061 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 D ND2 ASN 61 B ASN 61 1_555 H C1 NAG . B NAG 2061 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4HC1 _atom_sites.fract_transf_matrix[1][1] 0.003146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000181 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 2061 3061 NAG NAG . H 4 NAG B 1 2061 3061 NAG NAG . I 5 HOH A 1 401 1 HOH HOH . I 5 HOH A 2 402 5 HOH HOH . I 5 HOH A 3 403 10 HOH HOH . I 5 HOH A 4 404 14 HOH HOH . I 5 HOH A 5 405 22 HOH HOH . J 5 HOH H 1 301 9 HOH HOH . K 5 HOH L 1 301 4 HOH HOH . K 5 HOH L 2 302 12 HOH HOH . K 5 HOH L 3 303 21 HOH HOH . K 5 HOH L 4 304 24 HOH HOH . K 5 HOH L 5 305 26 HOH HOH . K 5 HOH L 6 306 27 HOH HOH . K 5 HOH L 7 307 31 HOH HOH . L 5 HOH B 1 401 3 HOH HOH . L 5 HOH B 2 402 6 HOH HOH . L 5 HOH B 3 403 11 HOH HOH . L 5 HOH B 4 404 18 HOH HOH . L 5 HOH B 5 405 29 HOH HOH . M 5 HOH M 1 301 2 HOH HOH . M 5 HOH M 2 302 7 HOH HOH . M 5 HOH M 3 303 8 HOH HOH . M 5 HOH M 4 304 16 HOH HOH . M 5 HOH M 5 305 19 HOH HOH . M 5 HOH M 6 306 20 HOH HOH . N 5 HOH N 1 301 13 HOH HOH . N 5 HOH N 2 302 15 HOH HOH . N 5 HOH N 3 303 17 HOH HOH . N 5 HOH N 4 304 23 HOH HOH . N 5 HOH N 5 305 25 HOH HOH . N 5 HOH N 6 306 28 HOH HOH . N 5 HOH N 7 307 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 4 53.968 -11.953 36.086 1 89.49 ? C1 NAG 2061 A 1 HETATM 2 C C2 NAG . . . G 4 54.765 -13.137 36.617 1 90.11 ? C2 NAG 2061 A 1 HETATM 3 C C3 NAG . . . G 4 55.448 -12.749 37.922 1 93.39 ? C3 NAG 2061 A 1 HETATM 4 C C4 NAG . . . G 4 56.258 -11.47 37.739 1 98.42 ? C4 NAG 2061 A 1 HETATM 5 C C5 NAG . . . G 4 55.462 -10.382 37.019 1 99.62 ? C5 NAG 2061 A 1 HETATM 6 C C6 NAG . . . G 4 56.371 -9.215 36.65 1 101.43 ? C6 NAG 2061 A 1 HETATM 7 C C7 NAG . . . G 4 53.802 -15.247 35.882 1 82.57 ? C7 NAG 2061 A 1 HETATM 8 C C8 NAG . . . G 4 52.71 -16.257 36.073 1 77.23 ? C8 NAG 2061 A 1 HETATM 9 N N2 NAG . . . G 4 53.898 -14.287 36.802 1 87.79 ? N2 NAG 2061 A 1 HETATM 10 O O3 NAG . . . G 4 56.206 -13.789 38.346 1 92.67 ? O3 NAG 2061 A 1 HETATM 11 O O4 NAG . . . G 4 56.668 -10.991 39.001 1 97.45 ? O4 NAG 2061 A 1 HETATM 12 O O5 NAG . . . G 4 54.845 -10.872 35.845 1 95.14 ? O5 NAG 2061 A 1 HETATM 13 O O6 NAG . . . G 4 55.704 -8.372 35.737 1 102.14 ? O6 NAG 2061 A 1 HETATM 14 O O7 NAG . . . G 4 54.553 -15.326 34.911 1 79.45 ? O7 NAG 2061 A 1 HETATM 15 H H2 NAG . . . G 4 55.529 -13.393 35.883 1 108.13 ? H2 NAG 2061 A 1 HETATM 16 H H3 NAG . . . G 4 54.678 -12.581 38.675 1 112.07 ? H3 NAG 2061 A 1 HETATM 17 H H4 NAG . . . G 4 57.136 -11.704 37.136 1 118.11 ? H4 NAG 2061 A 1 HETATM 18 H H5 NAG . . . G 4 54.692 -10.015 37.697 1 119.54 ? H5 NAG 2061 A 1 HETATM 19 H H61 NAG . . . G 4 57.299 -9.597 36.225 1 121.72 ? H61 NAG 2061 A 1 HETATM 20 H H62 NAG . . . G 4 56.621 -8.651 37.549 1 121.72 ? H62 NAG 2061 A 1 HETATM 21 H H81 NAG . . . G 4 53.146 -17.252 36.164 1 92.68 ? H81 NAG 2061 A 1 HETATM 22 H H82 NAG . . . G 4 52.038 -16.232 35.215 1 92.68 ? H82 NAG 2061 A 1 HETATM 23 H H83 NAG . . . G 4 52.151 -16.021 36.979 1 92.68 ? H83 NAG 2061 A 1 HETATM 24 H HN2 NAG . . . G 4 53.359 -14.35 37.653 1 105.35 ? HN2 NAG 2061 A 1 HETATM 25 H HO3 NAG . . . G 4 56.261 -14.527 37.703 1 111.2 ? HO3 NAG 2061 A 1 HETATM 26 H HO4 NAG . . . G 4 56.337 -11.591 39.702 1 116.94 ? HO4 NAG 2061 A 1 HETATM 27 H HO6 NAG . . . G 4 54.812 -8.732 35.552 1 122.57 ? HO6 NAG 2061 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #