data_4HC3 # _model_server_result.job_id mFI3ZkJMQ3iIhm5AVVB_Ng _model_server_result.datetime_utc '2024-11-08 06:56:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hc3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":74}' # _entry.id 4HC3 # _exptl.entry_id 4HC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HC3 _cell.length_a 32.4 _cell.length_b 32.4 _cell.length_c 178.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/4 0 1 0 1 0 0 0 0 -1 0 0 44.6 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 27 A CYS 27 1_555 B CAB HEC . A HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? covale ? covale2 A SG CYS 30 A CYS 30 1_555 B CAC HEC . A HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale3 A SG CYS 51 A CYS 51 1_555 C CAB HEC . A HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? covale ? covale4 A SG CYS 54 A CYS 54 1_555 C CAC HEC . A HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? covale ? covale5 A SG CYS 65 A CYS 65 1_555 D CAB HEC . A HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? covale ? covale6 A SG CYS 68 A CYS 68 1_555 D CAC HEC . A HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc1 A NE2 HIS 17 A HIS 17 1_555 B FE HEC . A HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc2 A NE2 HIS 20 A HIS 20 1_555 C FE HEC . A HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc3 A NE2 HIS 31 A HIS 31 1_555 B FE HEC . A HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc4 A NE2 HIS 47 A HIS 47 1_555 D FE HEC . A HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc5 A NE2 HIS 55 A HIS 55 1_555 C FE HEC . A HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc6 A NE2 HIS 69 A HIS 69 1_555 D FE HEC . A HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 174 n n FE NB HEC sing 175 n n FE NC HEC sing 176 n n FE ND HEC sing 177 n n CHA C1A HEC doub 178 n n CHA C4D HEC sing 179 n n CHA HHA HEC sing 180 n n CHB C4A HEC doub 181 n n CHB C1B HEC sing 182 n n CHB HHB HEC sing 183 n n CHC C4B HEC doub 184 n n CHC C1C HEC sing 185 n n CHC HHC HEC sing 186 n n CHD C4C HEC doub 187 n n CHD C1D HEC sing 188 n n CHD HHD HEC sing 189 n n NA C1A HEC sing 190 n y NA C4A HEC sing 191 n y C1A C2A HEC sing 192 n y C2A C3A HEC doub 193 n y C2A CAA HEC sing 194 n n C3A C4A HEC sing 195 n y C3A CMA HEC sing 196 n n CMA HMA1 HEC sing 197 n n CMA HMA2 HEC sing 198 n n CMA HMA3 HEC sing 199 n n CAA CBA HEC sing 200 n n CAA HAA1 HEC sing 201 n n CAA HAA2 HEC sing 202 n n CBA CGA HEC sing 203 n n CBA HBA1 HEC sing 204 n n CBA HBA2 HEC sing 205 n n CGA O1A HEC doub 206 n n CGA O2A HEC sing 207 n n O2A H2A HEC sing 208 n n NB C1B HEC sing 209 n y NB C4B HEC sing 210 n y C1B C2B HEC doub 211 n y C2B C3B HEC sing 212 n y C2B CMB HEC sing 213 n n C3B C4B HEC sing 214 n y C3B CAB HEC doub 215 e n CMB HMB1 HEC sing 216 n n CMB HMB2 HEC sing 217 n n CMB HMB3 HEC sing 218 n n CAB CBB HEC sing 219 n n CAB HAB HEC sing 220 n n CBB HBB1 HEC sing 221 n n CBB HBB2 HEC sing 222 n n CBB HBB3 HEC sing 223 n n NC C1C HEC sing 224 n y NC C4C HEC sing 225 n y C1C C2C HEC doub 226 n y C2C C3C HEC sing 227 n y C2C CMC HEC sing 228 n n C3C C4C HEC sing 229 n y C3C CAC HEC doub 230 e n CMC HMC1 HEC sing 231 n n CMC HMC2 HEC sing 232 n n CMC HMC3 HEC sing 233 n n CAC CBC HEC sing 234 n n CAC HAC HEC sing 235 n n CBC HBC1 HEC sing 236 n n CBC HBC2 HEC sing 237 n n CBC HBC3 HEC sing 238 n n ND C1D HEC sing 239 n y ND C4D HEC sing 240 n y C1D C2D HEC doub 241 n y C2D C3D HEC sing 242 n y C2D CMD HEC sing 243 n n C3D C4D HEC doub 244 n y C3D CAD HEC sing 245 n n CMD HMD1 HEC sing 246 n n CMD HMD2 HEC sing 247 n n CMD HMD3 HEC sing 248 n n CAD CBD HEC sing 249 n n CAD HAD1 HEC sing 250 n n CAD HAD2 HEC sing 251 n n CBD CGD HEC sing 252 n n CBD HBD1 HEC sing 253 n n CBD HBD2 HEC sing 254 n n CGD O1D HEC doub 255 n n CGD O2D HEC sing 256 n n O2D H2D HEC sing 257 n n # _atom_sites.entry_id 4HC3 _atom_sites.fract_transf_matrix[1][1] 0.030864 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 72 72 HEC HEM . C 2 HEC A 1 73 73 HEC HEM . D 2 HEC A 1 74 74 HEC HEM . E 3 DXC A 1 75 75 DXC DXC . F 4 SO4 A 1 76 76 SO4 SO4 . G 4 SO4 A 1 77 77 SO4 SO4 . H 4 SO4 A 1 78 78 SO4 SO4 . I 5 HOH A 1 101 100 HOH HOH . I 5 HOH A 2 102 101 HOH HOH . I 5 HOH A 3 103 102 HOH HOH . I 5 HOH A 4 104 103 HOH HOH . I 5 HOH A 5 105 104 HOH HOH . I 5 HOH A 6 106 105 HOH HOH . I 5 HOH A 7 107 106 HOH HOH . I 5 HOH A 8 108 107 HOH HOH . I 5 HOH A 9 109 108 HOH HOH . I 5 HOH A 10 110 109 HOH HOH . I 5 HOH A 11 111 110 HOH HOH . I 5 HOH A 12 112 111 HOH HOH . I 5 HOH A 13 113 112 HOH HOH . I 5 HOH A 14 114 113 HOH HOH . I 5 HOH A 15 115 114 HOH HOH . I 5 HOH A 16 116 115 HOH HOH . I 5 HOH A 17 117 116 HOH HOH . I 5 HOH A 18 118 117 HOH HOH . I 5 HOH A 19 119 118 HOH HOH . I 5 HOH A 20 120 119 HOH HOH . I 5 HOH A 21 121 120 HOH HOH . I 5 HOH A 22 122 121 HOH HOH . I 5 HOH A 23 123 122 HOH HOH . I 5 HOH A 24 124 123 HOH HOH . I 5 HOH A 25 125 124 HOH HOH . I 5 HOH A 26 126 125 HOH HOH . I 5 HOH A 27 127 126 HOH HOH . I 5 HOH A 28 128 127 HOH HOH . I 5 HOH A 29 129 129 HOH HOH . I 5 HOH A 30 130 130 HOH HOH . I 5 HOH A 31 131 131 HOH HOH . I 5 HOH A 32 132 132 HOH HOH . I 5 HOH A 33 133 133 HOH HOH . I 5 HOH A 34 134 134 HOH HOH . I 5 HOH A 35 135 135 HOH HOH . I 5 HOH A 36 136 136 HOH HOH . I 5 HOH A 37 137 137 HOH HOH . I 5 HOH A 38 138 138 HOH HOH . I 5 HOH A 39 139 139 HOH HOH . I 5 HOH A 40 140 140 HOH HOH . I 5 HOH A 41 141 141 HOH HOH . I 5 HOH A 42 142 142 HOH HOH . I 5 HOH A 43 143 143 HOH HOH . I 5 HOH A 44 144 144 HOH HOH . I 5 HOH A 45 145 145 HOH HOH . I 5 HOH A 46 146 146 HOH HOH . I 5 HOH A 47 147 147 HOH HOH . I 5 HOH A 48 148 149 HOH HOH . I 5 HOH A 49 149 150 HOH HOH . I 5 HOH A 50 150 151 HOH HOH . I 5 HOH A 51 151 152 HOH HOH . I 5 HOH A 52 152 153 HOH HOH . I 5 HOH A 53 153 154 HOH HOH . I 5 HOH A 54 154 155 HOH HOH . I 5 HOH A 55 155 156 HOH HOH . I 5 HOH A 56 156 157 HOH HOH . I 5 HOH A 57 157 158 HOH HOH . I 5 HOH A 58 158 159 HOH HOH . I 5 HOH A 59 159 160 HOH HOH . I 5 HOH A 60 160 162 HOH HOH . I 5 HOH A 61 161 163 HOH HOH . I 5 HOH A 62 162 164 HOH HOH . I 5 HOH A 63 163 165 HOH HOH . I 5 HOH A 64 164 166 HOH HOH . I 5 HOH A 65 165 168 HOH HOH . I 5 HOH A 66 166 170 HOH HOH . I 5 HOH A 67 167 171 HOH HOH . I 5 HOH A 68 168 172 HOH HOH . I 5 HOH A 69 169 173 HOH HOH . I 5 HOH A 70 170 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . D 2 15.131 32.386 14.714 1 12.46 ? FE HEC 74 A 1 HETATM 2 C CHA HEC . . . D 2 16.046 32.936 17.944 1 14.19 ? CHA HEC 74 A 1 HETATM 3 C CHB HEC . . . D 2 11.886 32.633 15.445 1 16.02 ? CHB HEC 74 A 1 HETATM 4 C CHC HEC . . . D 2 14.407 32.42 11.363 1 14.16 ? CHC HEC 74 A 1 HETATM 5 C CHD HEC . . . D 2 18.31 31.275 13.975 1 15.51 ? CHD HEC 74 A 1 HETATM 6 N NA HEC . . . D 2 14.146 32.724 16.396 1 13.04 ? NA HEC 74 A 1 HETATM 7 C C1A HEC . . . D 2 14.693 32.996 17.635 1 15.38 ? C1A HEC 74 A 1 HETATM 8 C C2A HEC . . . D 2 13.617 33.341 18.532 1 13.99 ? C2A HEC 74 A 1 HETATM 9 C C3A HEC . . . D 2 12.464 33.228 17.843 1 16.3 ? C3A HEC 74 A 1 HETATM 10 C C4A HEC . . . D 2 12.784 32.856 16.472 1 16.58 ? C4A HEC 74 A 1 HETATM 11 C CMA HEC . . . D 2 11.037 33.481 18.357 1 15.62 ? CMA HEC 74 A 1 HETATM 12 C CAA HEC . . . D 2 13.796 33.691 20.035 1 16.23 ? CAA HEC 74 A 1 HETATM 13 C CBA HEC . . . D 2 13.948 32.373 20.797 1 15.34 ? CBA HEC 74 A 1 HETATM 14 C CGA HEC . . . D 2 14.336 32.595 22.249 1 16.23 ? CGA HEC 74 A 1 HETATM 15 O O1A HEC . . . D 2 14.626 33.718 22.663 1 16.45 ? O1A HEC 74 A 1 HETATM 16 O O2A HEC . . . D 2 14.363 31.614 23 1 18.57 ? O2A HEC 74 A 1 HETATM 17 N NB HEC . . . D 2 13.458 32.463 13.606 1 13.82 ? NB HEC 74 A 1 HETATM 18 C C1B HEC . . . D 2 12.194 32.593 14.121 1 15.22 ? C1B HEC 74 A 1 HETATM 19 C C2B HEC . . . D 2 11.245 32.718 13.027 1 15.73 ? C2B HEC 74 A 1 HETATM 20 C C3B HEC . . . D 2 11.96 32.673 11.907 1 16.89 ? C3B HEC 74 A 1 HETATM 21 C C4B HEC . . . D 2 13.363 32.54 12.244 1 13.66 ? C4B HEC 74 A 1 HETATM 22 C CMB HEC . . . D 2 9.697 32.847 13.167 1 16.47 ? CMB HEC 74 A 1 HETATM 23 C CAB HEC . . . D 2 11.45 32.807 10.454 1 17.49 ? CAB HEC 74 A 1 HETATM 24 C CBB HEC . . . D 2 10.754 33.945 10.211 1 20.17 ? CBB HEC 74 A 1 HETATM 25 N NC HEC . . . D 2 16.174 31.902 12.978 1 13.47 ? NC HEC 74 A 1 HETATM 26 C C1C HEC . . . D 2 15.679 31.949 11.696 1 14.5 ? C1C HEC 74 A 1 HETATM 27 C C2C HEC . . . D 2 16.731 31.51 10.796 1 13.49 ? C2C HEC 74 A 1 HETATM 28 C C3C HEC . . . D 2 17.803 31.172 11.533 1 14.21 ? C3C HEC 74 A 1 HETATM 29 C C4C HEC . . . D 2 17.467 31.428 12.916 1 13.7 ? C4C HEC 74 A 1 HETATM 30 C CMC HEC . . . D 2 16.563 31.382 9.273 1 14.15 ? CMC HEC 74 A 1 HETATM 31 C CAC HEC . . . D 2 19.17 30.604 11.073 1 14.7 ? CAC HEC 74 A 1 HETATM 32 C CBC HEC . . . D 2 19.84 31.125 10.021 1 15.25 ? CBC HEC 74 A 1 HETATM 33 N ND HEC . . . D 2 16.919 32.175 15.78 1 12.97 ? ND HEC 74 A 1 HETATM 34 C C1D HEC . . . D 2 18.088 31.655 15.271 1 14.62 ? C1D HEC 74 A 1 HETATM 35 C C2D HEC . . . D 2 19.046 31.514 16.35 1 14.06 ? C2D HEC 74 A 1 HETATM 36 C C3D HEC . . . D 2 18.354 32.027 17.575 1 14.73 ? C3D HEC 74 A 1 HETATM 37 C C4D HEC . . . D 2 17.028 32.409 17.14 1 14.56 ? C4D HEC 74 A 1 HETATM 38 C CMD HEC . . . D 2 20.459 30.972 16.275 1 13.99 ? CMD HEC 74 A 1 HETATM 39 C CAD HEC . . . D 2 18.879 32.064 19.014 1 15.09 ? CAD HEC 74 A 1 HETATM 40 C CBD HEC . . . D 2 19.599 33.34 19.333 1 17.45 ? CBD HEC 74 A 1 HETATM 41 C CGD HEC . . . D 2 20.208 33.146 20.707 1 17.33 ? CGD HEC 74 A 1 HETATM 42 O O1D HEC . . . D 2 21.033 32.238 20.889 1 17.77 ? O1D HEC 74 A 1 HETATM 43 O O2D HEC . . . D 2 19.781 33.841 21.649 1 20.7 ? O2D HEC 74 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #