data_4HCQ # _model_server_result.job_id lxy-LSrV-ez3PTrPFQfJtQ _model_server_result.datetime_utc '2024-11-28 18:24:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hcq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4HCQ # _exptl.entry_id 4HCQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.188 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4HCQ _cell.length_a 79.27 _cell.length_b 79.27 _cell.length_c 276.73 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HCQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 120 A ASP 114 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc2 A OD1 ASN 245 A ASN 239 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc3 A OD1 ASP 423 A ASP 417 1_555 D CO CO . A CO 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc4 A OD2 ASP 423 A ASP 417 1_555 D CO CO . A CO 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.744 ? metalc ? metalc5 A OD1 ASP 423 A ASP 417 1_555 D CO CO . A CO 503 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc6 A OD2 ASP 423 A ASP 417 1_555 D CO CO . A CO 503 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc7 A OD1 ASP 423 A ASP 417 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc8 A OD1 ASP 423 A ASP 417 1_555 E MG MG . A MG 504 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc9 E MG MG . A MG 504 1_555 G O HOH . A HOH 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc10 E MG MG . A MG 504 1_555 G O HOH . A HOH 687 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.725 ? metalc ? metalc11 F MG MG . A MG 505 1_555 G O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc12 F MG MG . A MG 505 1_555 G O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc13 F MG MG . A MG 505 1_555 G O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? # _chem_comp.formula 'C8 H16 N O9 P' _chem_comp.formula_weight 301.188 _chem_comp.id GN1 _chem_comp.mon_nstd_flag n _chem_comp.name 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 2-(ACETYLAMINO)-2-DEOXY-1-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE;N-ACETYL-D-GLUCOSAMINE-1-PHOSPHATE;N-acetyl-1-O-phosphono-alpha-D-glucosamine;2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucose;2-acetamido-2-deoxy-1-O-phosphono-D-glucose;2-acetamido-2-deoxy-1-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GN1 sing 129 n n C1 O5 GN1 sing 130 n n C1 C2 GN1 sing 131 n n C1 H1 GN1 sing 132 n n OP1 P GN1 sing 133 n n OP1 HOP1 GN1 sing 134 n n P OP3 GN1 doub 135 n n P OP2 GN1 sing 136 n n P O1 GN1 sing 137 n n OP2 HOP2 GN1 sing 138 n n C2 C3 GN1 sing 139 n n C2 N2 GN1 sing 140 n n C2 H2 GN1 sing 141 n n C3 C4 GN1 sing 142 n n C3 O3 GN1 sing 143 n n C3 H3 GN1 sing 144 n n C4 C5 GN1 sing 145 n n C4 O4 GN1 sing 146 n n C4 H4 GN1 sing 147 n n C5 C6 GN1 sing 148 n n C5 O5 GN1 sing 149 n n C5 H5 GN1 sing 150 n n C6 O6 GN1 sing 151 n n C6 H61 GN1 sing 152 n n C6 H62 GN1 sing 153 n n C8 C7 GN1 sing 154 n n C8 H81 GN1 sing 155 n n C8 H82 GN1 sing 156 n n C8 H83 GN1 sing 157 n n O3 HO3 GN1 sing 158 n n O4 HO4 GN1 sing 159 n n N2 C7 GN1 sing 160 n n N2 HN2 GN1 sing 161 n n C7 O7 GN1 doub 162 n n O6 HO6 GN1 sing 163 n n # _pdbx_chem_comp_identifier.comp_id GN1 _pdbx_chem_comp_identifier.identifier a-D-Glcp1PO3NAc _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4HCQ _atom_sites.fract_transf_matrix[1][1] 0.012615 _atom_sites.fract_transf_matrix[1][2] 0.007283 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014567 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GN1 A 1 501 496 GN1 GN1 . C 2 GN1 A 1 502 497 GN1 GN1 . D 3 CO A 1 503 498 CO CO . E 4 MG A 1 504 499 MG MG . F 4 MG A 1 505 1 MG MG . G 5 HOH A 1 601 1 HOH HOH . G 5 HOH A 2 602 1 HOH HOH . G 5 HOH A 3 603 1 HOH HOH . G 5 HOH A 4 604 1 HOH HOH . G 5 HOH A 5 605 1 HOH HOH . G 5 HOH A 6 606 500 HOH HOH . G 5 HOH A 7 607 501 HOH HOH . G 5 HOH A 8 608 502 HOH HOH . G 5 HOH A 9 609 503 HOH HOH . G 5 HOH A 10 610 504 HOH HOH . G 5 HOH A 11 611 505 HOH HOH . G 5 HOH A 12 612 506 HOH HOH . G 5 HOH A 13 613 507 HOH HOH . G 5 HOH A 14 614 508 HOH HOH . G 5 HOH A 15 615 509 HOH HOH . G 5 HOH A 16 616 510 HOH HOH . G 5 HOH A 17 617 511 HOH HOH . G 5 HOH A 18 618 512 HOH HOH . G 5 HOH A 19 619 513 HOH HOH . G 5 HOH A 20 620 514 HOH HOH . G 5 HOH A 21 621 515 HOH HOH . G 5 HOH A 22 622 516 HOH HOH . G 5 HOH A 23 623 517 HOH HOH . G 5 HOH A 24 624 518 HOH HOH . G 5 HOH A 25 625 519 HOH HOH . G 5 HOH A 26 626 520 HOH HOH . G 5 HOH A 27 627 521 HOH HOH . G 5 HOH A 28 628 522 HOH HOH . G 5 HOH A 29 629 523 HOH HOH . G 5 HOH A 30 630 524 HOH HOH . G 5 HOH A 31 631 525 HOH HOH . G 5 HOH A 32 632 526 HOH HOH . G 5 HOH A 33 633 527 HOH HOH . G 5 HOH A 34 634 528 HOH HOH . G 5 HOH A 35 635 529 HOH HOH . G 5 HOH A 36 636 530 HOH HOH . G 5 HOH A 37 637 531 HOH HOH . G 5 HOH A 38 638 532 HOH HOH . G 5 HOH A 39 639 533 HOH HOH . G 5 HOH A 40 640 534 HOH HOH . G 5 HOH A 41 641 535 HOH HOH . G 5 HOH A 42 642 536 HOH HOH . G 5 HOH A 43 643 537 HOH HOH . G 5 HOH A 44 644 538 HOH HOH . G 5 HOH A 45 645 539 HOH HOH . G 5 HOH A 46 646 540 HOH HOH . G 5 HOH A 47 647 541 HOH HOH . G 5 HOH A 48 648 542 HOH HOH . G 5 HOH A 49 649 543 HOH HOH . G 5 HOH A 50 650 544 HOH HOH . G 5 HOH A 51 651 545 HOH HOH . G 5 HOH A 52 652 546 HOH HOH . G 5 HOH A 53 653 547 HOH HOH . G 5 HOH A 54 654 548 HOH HOH . G 5 HOH A 55 655 549 HOH HOH . G 5 HOH A 56 656 550 HOH HOH . G 5 HOH A 57 657 551 HOH HOH . G 5 HOH A 58 658 552 HOH HOH . G 5 HOH A 59 659 553 HOH HOH . G 5 HOH A 60 660 554 HOH HOH . G 5 HOH A 61 661 555 HOH HOH . G 5 HOH A 62 662 556 HOH HOH . G 5 HOH A 63 663 557 HOH HOH . G 5 HOH A 64 664 558 HOH HOH . G 5 HOH A 65 665 559 HOH HOH . G 5 HOH A 66 666 560 HOH HOH . G 5 HOH A 67 667 561 HOH HOH . G 5 HOH A 68 668 562 HOH HOH . G 5 HOH A 69 669 563 HOH HOH . G 5 HOH A 70 670 564 HOH HOH . G 5 HOH A 71 671 565 HOH HOH . G 5 HOH A 72 672 566 HOH HOH . G 5 HOH A 73 673 567 HOH HOH . G 5 HOH A 74 674 568 HOH HOH . G 5 HOH A 75 675 569 HOH HOH . G 5 HOH A 76 676 570 HOH HOH . G 5 HOH A 77 677 571 HOH HOH . G 5 HOH A 78 678 572 HOH HOH . G 5 HOH A 79 679 573 HOH HOH . G 5 HOH A 80 680 574 HOH HOH . G 5 HOH A 81 681 575 HOH HOH . G 5 HOH A 82 682 576 HOH HOH . G 5 HOH A 83 683 577 HOH HOH . G 5 HOH A 84 684 578 HOH HOH . G 5 HOH A 85 685 579 HOH HOH . G 5 HOH A 86 686 580 HOH HOH . G 5 HOH A 87 687 581 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GN1 . . . C 2 4.062 27.094 -18.77 1 44.37 ? C1 GN1 502 A 1 HETATM 2 O OP1 GN1 . . . C 2 2.704 26.335 -16.056 1 44.68 ? OP1 GN1 502 A 1 HETATM 3 P P GN1 . . . C 2 2.219 27.487 -16.898 1 48.63 ? P GN1 502 A 1 HETATM 4 O OP2 GN1 . . . C 2 0.694 27.636 -16.946 1 47.87 ? OP2 GN1 502 A 1 HETATM 5 O OP3 GN1 . . . C 2 2.915 28.815 -16.616 1 47.58 ? OP3 GN1 502 A 1 HETATM 6 C C2 GN1 . . . C 2 4.418 27.335 -20.254 1 42.37 ? C2 GN1 502 A 1 HETATM 7 C C3 GN1 . . . C 2 4.022 26.118 -21.081 1 42.68 ? C3 GN1 502 A 1 HETATM 8 C C4 GN1 . . . C 2 4.682 24.876 -20.518 1 40.34 ? C4 GN1 502 A 1 HETATM 9 C C5 GN1 . . . C 2 4.574 24.669 -19.012 1 40.42 ? C5 GN1 502 A 1 HETATM 10 C C6 GN1 . . . C 2 5.705 23.73 -18.561 1 39.65 ? C6 GN1 502 A 1 HETATM 11 C C8 GN1 . . . C 2 5.505 29.976 -20.24 1 36.59 ? C8 GN1 502 A 1 HETATM 12 O O1 GN1 . . . C 2 2.662 27.087 -18.424 1 44.99 ? O1 GN1 502 A 1 HETATM 13 O O3 GN1 . . . C 2 4.383 26.217 -22.471 1 43.73 ? O3 GN1 502 A 1 HETATM 14 O O4 GN1 . . . C 2 4.052 23.795 -21.166 1 39.51 ? O4 GN1 502 A 1 HETATM 15 O O5 GN1 . . . C 2 4.71 25.895 -18.284 1 43.38 ? O5 GN1 502 A 1 HETATM 16 N N2 GN1 . . . C 2 3.684 28.476 -20.791 1 39.4 ? N2 GN1 502 A 1 HETATM 17 C C7 GN1 . . . C 2 4.153 29.751 -20.834 1 39.63 ? C7 GN1 502 A 1 HETATM 18 O O6 GN1 . . . C 2 5.495 23.252 -17.224 1 34.76 ? O6 GN1 502 A 1 HETATM 19 O O7 GN1 . . . C 2 3.522 30.709 -21.322 1 38.65 ? O7 GN1 502 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #