data_4HCY # _model_server_result.job_id PI0u8c2I_YXXdzVuQ1du-w _model_server_result.datetime_utc '2024-11-14 17:08:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hcy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":401}' # _entry.id 4HCY # _exptl.entry_id 4HCY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 263.359 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-3-methylthiophen-2-yl}ethanol _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HCY _cell.length_a 104.09 _cell.length_b 201.86 _cell.length_c 305.24 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G 1 1 B,H 2 1 C,I 3 1 D,J 4 1 E,K 5 1 F,L 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C13 H17 N3 O S' _chem_comp.formula_weight 263.359 _chem_comp.id 0YN _chem_comp.mon_nstd_flag . _chem_comp.name 2-{4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-3-methylthiophen-2-yl}ethanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5G C5B 0YN sing 1 n n C5B C5A 0YN sing 2 n n C5A C5 0YN sing 3 n n C5 C4 0YN doub 4 n y C5 S1 0YN sing 5 n y C4A C4 0YN sing 6 n n C4 C3 0YN sing 7 n y S1 C2 0YN sing 8 n y C3 C2 0YN doub 9 n y C3 C35 0YN sing 10 n n C35 C5' 0YN sing 11 n n C5' C6' 0YN doub 12 n y C5' C4' 0YN sing 13 n y C6' N1' 0YN sing 14 n y N4' C4' 0YN sing 15 n n C4' N3' 0YN doub 16 n y N1' C2' 0YN doub 17 n y N3' C2' 0YN sing 18 n y C2' C2A 0YN sing 19 n n C2A H1 0YN sing 20 n n C2A H2 0YN sing 21 n n C2A H3 0YN sing 22 n n C35 H4 0YN sing 23 n n C35 H5 0YN sing 24 n n C2 H6 0YN sing 25 n n C4A H7 0YN sing 26 n n C4A H8 0YN sing 27 n n C4A H9 0YN sing 28 n n C5A H10 0YN sing 29 n n C5A H11 0YN sing 30 n n C5B H12 0YN sing 31 n n C5B H13 0YN sing 32 n n O5G H14 0YN sing 33 n n N4' H15 0YN sing 34 n n N4' H16 0YN sing 35 n n C6' H17 0YN sing 36 n n # _atom_sites.entry_id 4HCY _atom_sites.fract_transf_matrix[1][1] 0.009607 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 0YN A 1 401 357 0YN T3N . H 2 0YN B 1 401 357 0YN T3N . I 2 0YN C 1 401 357 0YN T3N . J 2 0YN D 1 401 357 0YN T3N . K 2 0YN E 1 401 357 0YN T3N . L 2 0YN F 1 401 357 0YN T3N . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2A 0YN . . . J 2 17.799 -5.115 58.413 1 128.9 ? C2A 0YN 401 D 1 HETATM 2 C C35 0YN . . . J 2 23.1 -3.825 60.18 1 128.9 ? C35 0YN 401 D 1 HETATM 3 C C2 0YN . . . J 2 23.876 -5.869 58.813 1 128.9 ? C2 0YN 401 D 1 HETATM 4 S S1 0YN . . . J 2 25.351 -6.692 58.422 1 128.9 ? S1 0YN 401 D 1 HETATM 5 C C5 0YN . . . J 2 26.375 -5.639 59.32 1 128.9 ? C5 0YN 401 D 1 HETATM 6 C C4 0YN . . . J 2 25.522 -4.596 59.952 1 128.9 ? C4 0YN 401 D 1 HETATM 7 C C4A 0YN . . . J 2 26.057 -3.489 60.822 1 128.9 ? C4A 0YN 401 D 1 HETATM 8 C C5A 0YN . . . J 2 27.856 -5.932 59.308 1 128.9 ? C5A 0YN 401 D 1 HETATM 9 C C5B 0YN . . . J 2 28.102 -7.341 58.783 1 128.9 ? C5B 0YN 401 D 1 HETATM 10 O O5G 0YN . . . J 2 29.508 -7.613 58.79 1 128.9 ? O5G 0YN 401 D 1 HETATM 11 N N1' 0YN . . . J 2 19.824 -5.6 59.744 1 128.9 ? N1' 0YN 401 D 1 HETATM 12 C C2' 0YN . . . J 2 19.191 -4.78 58.878 1 128.9 ? C2' 0YN 401 D 1 HETATM 13 N N3' 0YN . . . J 2 19.796 -3.661 58.426 1 128.9 ? N3' 0YN 401 D 1 HETATM 14 C C4' 0YN . . . J 2 21.042 -3.344 58.833 1 128.9 ? C4' 0YN 401 D 1 HETATM 15 N N4' 0YN . . . J 2 21.643 -2.221 58.373 1 128.9 ? N4' 0YN 401 D 1 HETATM 16 C C5' 0YN . . . J 2 21.705 -4.178 59.713 1 128.9 ? C5' 0YN 401 D 1 HETATM 17 C C6' 0YN . . . J 2 21.058 -5.319 60.172 1 128.9 ? C6' 0YN 401 D 1 HETATM 18 C C3 0YN . . . J 2 24.154 -4.77 59.645 1 128.9 ? C3 0YN 401 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #